scholarly journals Acute toxicity of cyanide in aerobic respiration: Theoretical and experimental support for murburn explanation

2020 ◽  
Vol 11 (1) ◽  
pp. 32-56 ◽  
Author(s):  
Kelath Murali Manoj ◽  
Surjith Ramasamy ◽  
Abhinav Parashar ◽  
Daniel Andrew Gideon ◽  
Vidhu Soman ◽  
...  

AbstractThe inefficiency of cyanide/HCN (CN) binding with heme proteins (under physiological regimes) is demonstrated with an assessment of thermodynamics, kinetics, and inhibition constants. The acute onset of toxicity and CN’s mg/Kg LD50 (μM lethal concentration) suggests that the classical hemeFe binding-based inhibition rationale is untenable to account for the toxicity of CN. In vitro mechanistic probing of CN-mediated inhibition of hemeFe reductionist systems was explored as a murburn model for mitochondrial oxidative phosphorylation (mOxPhos). The effect of CN in haloperoxidase catalyzed chlorine moiety transfer to small organics was considered as an analogous probe for phosphate group transfer in mOxPhos. Similarly, inclusion of CN in peroxidase-catalase mediated one-electron oxidation of small organics was used to explore electron transfer outcomes in mOxPhos, leading to water formation. The free energy correlations from a Hammett study and IC50/Hill slopes analyses and comparison with ligands $\left( {\text{CO}}/{{{{\text{H}}_{2}}\text{S}}/{\text{N}_{3}^{\text{-}}}\;}\; \right)$ provide insights into the involvement of diffusible radicals and proton-equilibriums, explaining analogous outcomes in mOxPhos chemistry. Further, we demonstrate that superoxide (diffusible reactive oxygen species, DROS) enables in vitro ATP synthesis from ADP+phosphate, and show that this reaction is inhibited by CN. Therefore, practically instantaneous CN ion-radical interactions with DROS in matrix catalytically disrupt mOxPhos, explaining the acute lethal effect of CN.

2019 ◽  
Author(s):  
Kelath Murali Manoj ◽  
Nikolai Bazhin

Transformed Gibbs free energy values of respiratory reactions are calculated to address the spontaneity, selectivity, control, and efficiency of oxidative phosphorylation. We present tangible explanations for ubiquinone’s role mitochondria, HCN > H2S order of cellular toxicity in aerobes and why oxygen inhibits anaerobes. Our data/arguments highlight the significance of proton deficiency in NADH/mitochondria and link the ‘oxygen → ROS (reactive oxygen species) → water’ metabolic pathway to the macroscopic physiologies of ATP-synthesis, trans-membrane potential, thermogenesis, and homeostasis. This ‘murburn perspective’ affords a probabilistically and thermodynamically viable precept for the origin and evolution of the ‘working logic’ of oxygen-centric life.


2019 ◽  
Author(s):  
Kelath Murali Manoj ◽  
Vidhu Soman ◽  
Vivian David Jacob ◽  
Abhinav Parashar ◽  
Daniel Andrew Gideon ◽  
...  

The long-standing explanation for cellular respiration (mitochondrial oxidative phosphorylation, mOxPhos) in textbooks is proton-centric and involves the elements of Rotary ATP synthesis, Chemiosmosis principle, Proton pumps and Electron transport chain (in short, the RCPE model). Addressing certain lacunae in the RCPE model, an alternative scheme based on murburn concept was proposed in 2017 (Manoj, 2017). The new proposal is oxygen-centric in essence, and it advocates constructive roles for diffusible reactive oxygen species (DROS) in electron transfer reactions and ATP-synthesis. By the end of 2018, significant arguments and experimental evidences (in vitro, in situ, and in silico) had accumulated supporting the new mechanism. Herein, the authors compare the predictive capabilities of the two models. Theoretical concepts and expectations are detailed to differentiate the two models, and the correlations are cross-checked with the available data/information. Experimental strategies are further charted to delineate and demarcate the two hypotheses’ relevance in mOxPhos.


2019 ◽  
Author(s):  
Kelath Murali Manoj ◽  
Surjith Ramasamy ◽  
Abhinav Parashar ◽  
Vidhu Soman ◽  
Kannan Pakshirajan

AbstractCyanide (CN) toxicity is traditionally understood to result from its binding of hemeFe centers, thereby disrupting mitochondrial cytochrome oxidase function and oxygen utilization by other globin proteins. Recently, a diffusible reactive oxygen species (DROS) mediated reaction mechanism called murburn concept was proposed to explain mitochondrial ATP-synthesis and heat generation. Per this purview, it was theorized that CN ion-radical equilibrium dissipates the catalytically vital DROS into futile cycles, producing water. In the current study, a comparative quantitative assessment of the above two explanations is made for: (i) lethal dosage or concentrations of CN, (ii) thermodynamics and kinetics of the binding/reaction, and (iii) correlation of CN with the binding data and reaction chemistry of H2S/CO. The quantitative findings suggest that the hemeFe binding-based toxicity explanation is untenable. CN also inhibited the experimental in vitro DROS-mediated coupling of inorganic phosphate with ADP. Further, pH-dependent inhibition profiles of heme enzyme catalyzed oxidation of a phenolic (wherein an -OH group reacts with DROS to form water, quite akin to the murburn model of ATP synthesis) indicated that- (i) multiple competitive reactions in milieu controlled outcomes and (ii) low concentrations of CN cannot disrupt activity via a coordination (binding) of cyanide at the distal hemeFe. Therefore, the μM-level IC50 and the acutely lethal effect of CN on cellular respiration could be explained by the deleterious interaction of CN ion-radical equilibrium with DROS in matrix, disrupting mitochondrial ATP synthesis. This work supports the murburn explanation for cellular respiration.


2018 ◽  
Vol 11 ◽  
pp. 117862641881844 ◽  
Author(s):  
Kelath Murali Manoj

The acclaimed explanation for mitochondrial oxidative phosphorylation (mOxPhos, or cellular respiration) is a deterministic proton-centric scheme involving four components: Rotary adenosine triphosphate (ATP)-synthesis, Chemiosmosis principle, Proton pumps, and Electron transport chain (abbreviated as RCPE hypothesis). Within this write-up, the RCPE scheme is critically analyzed with respect to mitochondrial architecture, proteins’ distribution, structure-function correlations and their interactive dynamics, overall reaction chemistry, kinetics, thermodynamics, evolutionary logic, and so on. It is found that the RCPE proposal fails to explain key physiological aspects of mOxPhos in several specific issues and also in holistic perspectives. Therefore, it is imperative to look for new explanations for mOxPhos.


2020 ◽  
Author(s):  
Daniel Andrew Gideon

One of the most fundamental questions in biology pertains to how mechano-chemical energy is derived from metabolic fuels. In particular, how oxidation of NADH is linked to ATP synthesis in mitochondrial oxidative phosphorylation (mOxPhos) has been a topic of intense debate. Together, the Peter Mitchell-Paul Boyer proposals for mOxPhos are termed herein as “chemiosmotic rotary ATP synthesis” (or CRAS) model, which was recently defended/advocated by Pedro Silva in Biophysical Chemistry . Over the last two decades, Sunil Nath had questioned some aspects of the CRAS proposal, and made subtle alterations on the roles of Complex V and ions within the reaction scheme, and continues to advocate his framework as “two-ion torsional ATP synthesis” (abbreviated herein as TITAS) model in Biophysical Chemistry . Kelath Murali Manoj had revisited the data on the respiratory machinery’s structures/distributions and based on two-decades of evidence-based experimental research in redox enzymology of heme/flavin proteins, had formulated the murburn model for mOxPhos. In this work, the ETC-CRAS hypothesis and its off-shoot, the TITAS proposal, are questioned in the light of the convincing chemicophysical logic provided by the murburn hypothesis.


2019 ◽  
Author(s):  
Kelath Murali Manoj ◽  
Nikolai Mikhailovich Bazhin

Three fundamental queries are addressed on the thermodynamics of aerobic cellular respiration (viz. ATP-synthesis and thermogenesis)- (1) Can the energy of oxygen reduction be utilized for proton transport?, (2) Is the trans-membrane proton differential harness-able as a potential energy capable of doing useful work?, and (3) If the movement of a miniscule amount of mitochondrial protons could give rise to a potential of ~200 mV and if such an electrical energy could sponsor ATP-synthesis. Further, we provide a definite answer to a fourth question- what is the thermodynamic role of protons in the oxygen-centric scheme of aerobic respiration? Finally, we demonstrate that the rotary ATPase activity of Complex V cannot account for physiological ATP synthesis and establish that the murburn reaction model explains the kinetics of mitochondrial oxidative phosphorylation.


2021 ◽  
Vol 14 (1) ◽  
Author(s):  
Olfa Chiboub ◽  
Ines Sifaoui ◽  
Manef Abderrabba ◽  
Mondher Mejri ◽  
José J. Fernández ◽  
...  

Abstract Background The in vitro activity of the brown seaweed Dictyota spiralis against both Leishmania amazonensis and Trypanosoma cruzi was evaluated in a previous study. Processing by bio-guided fractionation resulted in the isolation of three active compounds, classified as diterpenes. In the present study, we performed several assays to detect clinical features associated to cell death in L. amazonensis and T. cruzi with the aim to elucidate the mechanism of action of these compounds on parasitic cells. Methods The aims of the experiments were to detect and evaluate specific events involved in apoptosis-like cell death in the kinetoplastid, including DNA condensation, accumulation of reactive oxygen species and changes in ATP concentration, cell permeability and mitochondrial membrane potential, respectively, in treated cells. Results The results demonstrated that the three isolated diterpenes could inhibit the tested parasites by inducing an apoptosis-like cell death. Conclusions These results encourage further investigation on the isolated compounds as potential drug candidates against both L. amazonensis and T. cruzi. Graphic abstract


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