scholarly journals Bacterial Cell Inactivation Using a Single-Frequency Batch-Type Ultrasound Device

2021 ◽  
Vol 6 (1) ◽  
pp. 65-80
Author(s):  
Poetro Sambegoro ◽  
Maya Fitriyanti ◽  
Bentang Arief Budiman ◽  
Kamarisima Kamarisima ◽  
Sekar Wangi Arraudah Baliwangi ◽  
...  
Keyword(s):  
Bacterial Cell ◽  
Treatment Time ◽  
Low Cost ◽  
Single Frequency ◽  
Bacterial Cells ◽  
Cell Inactivation ◽  
E Coli ◽  
Commercial System ◽  
Ultrasound Device ◽  
Frequency Ultrasound

Ultrasound technology employs cavitation to generate high-pressure soundwaves to disrupt bacterial cells. This study reveals the effectiveness of a single frequency ultrasound device for bacterial cell inactivation. A low-cost ultrasound device having a single frequency, i.e. 22 kHz for lab-scale application, was developed first, and the prototype was mechanically designed and analyzed using the finite-element method to assure the targeted natural frequency could be achieved. The prototype was then tested inactivating bacterial cells, Escherichia coli (E. coli) and Bacillus subtilis (B. subtilis), in a simple medium and a food system, and the results were then compared to a commercial system. A treatment time of up to 15 minutes was able to reduce E. coli and B. subtilis cells by 3.3 log and 2.8 log, respectively, and these results were similar to those of the commercial system. The effectiveness of bacterial cell inactivation using the developed single-frequency ultrasound device is then discussed. The findings are useful for designing low-cost ultrasound devices for application in the food industry.

Analysis of the Crushing Effect about Ultrasound on E. coli and B. subtilis

2012 ◽  
Vol 260-261 ◽  
pp. 1017-1021
Author(s):  
Xin Ying Wang ◽  
Yong Tao Liu ◽  
Min Hui ◽  
Ji Fei Xu
Keyword(s):  
Escherichia Coli ◽  
Cell Wall ◽  
Bacillus Subtilis ◽  
Bacterial Cell ◽  
Logarithmic Phase ◽  
Growth Stages ◽  
Bacterial Cells ◽  
E Coli ◽  
Different Growth Stages ◽  
Main Factor

Escherichia coli and Bacillus subtilis as objects of the study, ultrasonic fragmentation acted on the bacterial cells in different growth stages, results showed that, it’s similar to the crushing effect of ultrasound on E. coli and B. subtilis cells of different growth stages, the highest crushing rate in the logarithmic phase, reached to 95.8% and 94.3% respectively, the crushing rate of adjustment phase is lowest, maintained at around 60%, the crushing rate stability cell was centered, which can be achieved 90%. The structure of the bacterial cell wall didn’t the main factor to decide the ultrasonic fragmentation effect, but different growth periods of bacterial cells did the determinant.

scholarly journals Proteome dynamics in persisting and resuscitating bacterial cells

2020 ◽  
Author(s):  
Maja Semanjski ◽  
Fabio Gratani ◽  
Till Englert ◽  
Viktor Beke ◽  
Nicolas Nalpas ◽  
...  
Keyword(s):  
Abc Transporters ◽  
Treatment Time ◽  
Bacterial Cells ◽  
Persister Cells ◽  
Time Resolved ◽  
E Coli ◽  
Associated Proteins ◽  
Label Incorporation ◽  
Insight Into

AbstractBacterial persister cells become transiently tolerant to antibiotics by restraining their growth and metabolic activity. Detailed molecular characterization of bacterial persistence is hindered by low count of persisting cells and the need for their isolation. Here we used sustained addition of stable isotope-labeled lysine to selectively label the proteome of hipA-induced persisting and hipB-induced resuscitating E. coli cells in minimal medium after antibiotic treatment. Time-resolved, 24-hour measurement of label incorporation allowed detection of over 500 newly synthetized proteins in persister cells, demonstrating low but widespread protein synthesis. Many essential proteins were newly synthesized and several ribosome-associated proteins showed unusually high synthesis levels, pointing to their roles in maintenance of persistence. At the onset of resuscitation, cells synthesized ABC transporters, restored translation machinery and resumed metabolism by inducing glycolysis and biosynthesis of amino acids. This dataset provides an unprecedented insight into the processes governing persistence and resuscitation of bacterial cells.

scholarly journals Three-dimensional label-free visualization and quantification of polyhydroxyalkanoates in individual bacterial cell in its native state

2021 ◽  
Vol 118 (31) ◽  
pp. e2103956118
Author(s):  
So Young Choi ◽  
Jeonghun Oh ◽  
JaeHwang Jung ◽  
YongKeun Park ◽  
Sang Yup Lee
Keyword(s):  
Bacterial Cell ◽  
Three Dimensional ◽  
Polymer Chains ◽  
Optical Diffraction ◽  
Bacterial Cells ◽  
Label Free ◽  
E Coli ◽  
Volume Weight ◽  
Division Process

Polyhydroxyalkanoates (PHAs) are biodegradable polyesters that are intracellularly accumulated as distinct insoluble granules by various microorganisms. PHAs have attracted much attention as sustainable substitutes for petroleum-based plastics. However, the formation of PHA granules and their characteristics, such as localization, volume, weight, and density of granules, in an individual live bacterial cell are not well understood. Here, we report the results of three-dimensional (3D) quantitative label-free analysis of PHA granules in individual live bacterial cells through measuring the refractive index distributions by optical diffraction tomography (ODT). The formation and growth of PHA granules in the cells of Cupriavidus necator, the best-studied native PHA producer, and recombinant Escherichia coli harboring C. necator poly(3-hydroxybutyrate) (PHB) biosynthesis pathway are comparatively examined. Through the statistical ODT analyses of the bacterial cells, the distinctive characteristics for density and localization of PHB granules in vivo could be observed. The PHB granules in recombinant E. coli show higher density and localization polarity compared with those of C. necator, indicating that polymer chains are more densely packed and granules tend to be located at the cell poles, respectively. The cells were investigated in more detail through real-time 3D analyses, showing how differently PHA granules are processed in relation to the cell division process in native and nonnative PHA-producing strains. We also show that PHA granule–associated protein PhaM of C. necator plays a key role in making these differences between C. necator and recombinant E. coli strains. This study provides spatiotemporal insights into PHA accumulation inside the native and recombinant bacterial cells.

Toxic Effect of 2-ethyl (bicyclo[2.2.1] heptane) on Bacterial Cells

2019 ◽  
Vol 35 (6) ◽  
pp. 67-72 ◽  
Author(s):  
I.V. Manukhov ◽  
L.S. Yaguzhinsky ◽  
M.V. Bermeshev ◽  
M.A. Zisman ◽  
V.G. Pevgov ◽  
...  
Keyword(s):  
Toxic Effect ◽  
Atmospheric Oxygen ◽  
Inducible Promoter ◽  
Oxygen Species ◽  
Bacterial Cells ◽  
Unique Identifier ◽  
E Coli ◽  
Lux Biosensors ◽  
High Level ◽  
Ministry Of Higher Education

Toxic effect of 2-ethylnorbornane (2-ethyl(bicyclo[2.2.1]heptane) (EBH)) on bacteria has been studied using the E. coli pRecA-lux and E. coli pKatG- lux cells as lux-biosensors. It was shown that the addition of EBH to the incubation medium leads to death and growth retardation, high level oxidative stress and DNA damage in E. coli cells. It is assumed that the oxidation of EBH with atmospheric oxygen causes the formation of reactive oxygen species in the medium, which makes a major contribution to the toxicity of this substance. biosensor, luciferase, bioluminescence, inducible promoter, PrecA, PkatG The authors are grateful to Stanislav Filippovich Chalkin for the development of interdisciplinary ties in the scientific community. The work was financially supported by the Ministry of Higher Education and Science of Russia (Project Unique Identifier RFMEFI60417X0181, Agreement No. 14.604.21.0181 of 26.09.2017).

Reducing multipath effect of low-cost GNSS receivers for monitoring by considering temporal correlations

2020 ◽  
Vol 14 (2) ◽  
pp. 167-175
Author(s):  
Li Zhang ◽  
Volker Schwieger
Keyword(s):  
Low Cost ◽  
Ground Plane ◽  
Single Frequency ◽  
Spatial Correlations ◽  
Raw Data ◽  
Multipath Effect ◽  
Temporal Correlations ◽  
Multipath Effects ◽  
Gnss Receivers ◽  
Multipath Signals

AbstractThe investigations on low-cost single frequency GNSS receivers at the Institute of Engineering Geodesy (IIGS) show that u-blox GNSS receivers combined with low-cost antennas and self-constructed L1-optimized choke rings can reach an accuracy which almost meets the requirements of geodetic applications (see Zhang and Schwieger [25]). However, the quality (accuracy and reliability) of low-cost GNSS receiver data should still be improved, particularly in environments with obstructions. The multipath effects are a major error source for the short baselines. The ground plate or the choke ring ground plane can reduce the multipath signals from the horizontal reflector (e. g. ground). However, the shieldings cannot reduce the multipath signals from the vertical reflectors (e. g. walls).Because multipath effects are spatially and temporally correlated, an algorithm is developed for reducing the multipath effect by considering the spatial correlations of the adjoined stations (see Zhang and Schwieger [24]). In this paper, an algorithm based on the temporal correlations will be introduced. The developed algorithm is based on the periodic behavior of the estimated coordinates and not on carrier phase raw data, which is easy to use. Because, for the users, coordinates are more accessible than the raw data. The multipath effect can cause periodic oscillations but the periods change over time. Besides this, the multipath effect’s influence on the coordinates is a mixture of different multipath signals from different satellites and different reflectors. These two properties will be used to reduce the multipath effect. The algorithm runs in two steps and iteratively. Test measurements were carried out in a multipath intensive environment; the accuracies of the measurements are improved by about 50 % and the results can be delivered in near-real-time (in ca. 30 minutes), therefore the algorithm is suitable for structural health monitoring applications.

Fe(iii)-complex mediated bacterial cell surface immobilization of eGFP and enzymes

2021 ◽  
Author(s):  
Lilin Feng ◽  
Liang Gao ◽  
Daniel F. Sauer ◽  
Yu Ji ◽  
Haiyang Cui ◽  
...  
Keyword(s):  
Cell Surface ◽  
Bacterial Cell ◽  
Surface Immobilization ◽  
E Coli ◽  
Bacterial Cell Surface ◽  
Reversible Method

A facile and reversible method to immobilize His6-tagged proteins on the E. coli cell surface through the formation of an Fe(iii)-complex.

scholarly journals A Local Oscillator Phase Compensation Technique for Ultra-Wideband Stepped-Frequency Continuous Wave Radar Based on a Low-Cost Software-Defined Radio

Sensors ◽  
2021 ◽  
Vol 21 (3) ◽  
pp. 780
Author(s):  
Kazunori Takahashi ◽  
Takashi Miwa
Keyword(s):  
Software Defined Radio ◽  
Initial Phase ◽  
Continuous Wave ◽  
Low Cost ◽  
Local Oscillator ◽  
The Other ◽  
Ultra Wideband ◽  
Single Frequency ◽  
Wave Radar ◽  
Stepped Frequency

The paper discusses a way to configure a stepped-frequency continuous wave (SFCW) radar using a low-cost software-defined radio (SDR). The most of high-end SDRs offer multiple transmitter (TX) and receiver (RX) channels, one of which can be used as the reference channel for compensating the initial phases of TX and RX local oscillator (LO) signals. It is same as how commercial vector network analyzers (VNAs) compensate for the LO initial phase. These SDRs can thus acquire phase-coherent in-phase and quadrature (I/Q) data without additional components and an SFCW radar can be easily configured. On the other hand, low-cost SDRs typically have only one transmitter and receiver. Therefore, the LO initial phase has to be compensated and the phases of the received I/Q signals have to be retrieved, preferably without employing an additional receiver and components to retain the system low-cost and simple. The present paper illustrates that the difference between the phases of TX and RX LO signals varies when the LO frequency is changed because of the timing of the commencement of the mixing. The paper then proposes a technique to compensate for the LO initial phases using the internal RF loopback of the transceiver chip and to reconstruct a pulse, which requires two streaming: one for the device under test (DUT) channel and the other for the internal RF loopback channel. The effect of the LO initial phase and the proposed method for the compensation are demonstrated by experiments at a single frequency and sweeping frequency, respectively. The results show that the proposed method can compensate for the LO initial phases and ultra-wideband (UWB) pulses can be reconstructed correctly from the data sampled by a low-cost SDR.

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