scholarly journals Phylogenetic and molecular analysis based on genes 16S-rRNA, OMPA and POMP to identify Chlamydia abortus infection occurrence at the milk samples of goats and sheep in west Azerbaijan of Iran

2021 ◽  
Author(s):  
Fariba Taheri ◽  
Abdulghaffar Ownagh ◽  
Karim Mardani
Keyword(s):  
16S Rrna ◽  
Molecular Analysis ◽  
Febrile Illness ◽  
Chlamydia Abortus ◽  
Sheep And Goats ◽  
Milk Samples ◽  
West Azerbaijan ◽  
Life Threat ◽  
Enzootic Abortion Of Ewes ◽  
In Pregnancy

Background and Objectives: Enzootic abortion in sheep and goats, also called ovine enzootic abortion (OEA) or enzootic abortion of ewes (EAE), is caused by Chlamydia abortus. The disease has a major economic impact as it represents the most important cause of lamb loss in sheep in parts of Europe, North America and Africa. This serious and potentially life-threat- ening zoonosis can also affect pregnant women after contact with lambing ewes, leading to severe febrile illness in pregnancy and loss of the foetus. Materials and Methods: The present study was conducted to the Phylogenetic and Molecular Analysis based on Genes 16S-rRNA, OmpA and POMP of C. abortus in milk samples collected from sheep and goats in West Azerbaijan province, Iran. During 2018, a total number of 360 milk samples were collected from sheep (n = 180) and goats (n = 180) of different regions of the province. All milk samples were subjected to DNA extraction and examined by PCR. Results: Among 360 milk samples collected from sheep and goats, 31 (8.611%; 95% CI=6.13-11.96) were positive for Chlamydia spp. The helicase, 16S-rRNA and ompA genes were examined and resulted in 8, 31, 31 of positive samples re- spectively. The accession numbers have been deposited in GenBank (NCBI) (MT367602 and MT367603). Conclusion: Phylogenetic analysis based on the gene of helicase showed that most of the isolates shared similarity > 99.97%.  

scholarly journals Distribution and Severity of Placental Lesions Caused by the Chlamydia abortus 1B Vaccine Strain in Vaccinated Ewes

Pathogens ◽  
2021 ◽  
Vol 10 (5) ◽  
pp. 543
Author(s):  
Sergio Gastón Caspe ◽  
Javier Palarea-Albaladejo ◽  
Clare Underwood ◽  
Morag Livingstone ◽  
Sean Ranjan Wattegedera ◽  
...  
Keyword(s):  
Disease Outbreaks ◽  
Principal Component ◽  
Placental Pathology ◽  
Wild Type ◽  
Cell Infiltrate ◽  
Chlamydia Abortus ◽  
Vaccine Type ◽  
The Difference ◽  
Enzootic Abortion Of Ewes

Chlamydia abortus infects livestock species worldwide and is the cause of enzootic abortion of ewes (EAE). In Europe, control of the disease is achieved using a live vaccine based on C. abortus 1B strain. Although the vaccine has been useful for controlling disease outbreaks, abortion events due to the vaccine have been reported. Recently, placental pathology resulting from a vaccine type strain (vt) infection has been reported and shown to be similar to that resulting from a natural wild-type (wt) infection. The aim of this study was to extend these observations by comparing the distribution and severity of the lesions, the composition of the predominating cell infiltrate, the amount of bacteria present and the role of the blood supply in infection. A novel system for grading the histological and pathological features present was developed and the resulting multi-parameter data were statistically transformed for exploration and visualisation through a tailored principal component analysis (PCA) to evaluate the difference between them. The analysis provided no evidence of meaningful differences between vt and wt strains in terms of the measured pathological parameters. The study also contributes a novel methodology for analysing the progression of infection in the placenta for other abortifacient pathogens.

scholarly journals Molecular Detection and Phylogeny of Anaplasmaphagocytophilum and Related Variants in Small Ruminants from Turkey

Animals ◽  
2021 ◽  
Vol 11 (3) ◽  
pp. 814
Author(s):  
Münir Aktaş ◽  
Sezayi Özübek ◽  
Mehmet Can Uluçeşme
Keyword(s):  
16S Rrna ◽  
Small Ruminants ◽  
Rrna Gene ◽  
Infection Rates ◽  
Sheep And Goats ◽  
Significant Difference ◽  
Pcr Rflp ◽  
First Time ◽  
Japan And China ◽  
Apparently Healthy

Anaplasma phagocytophilum causes tick-borne fever in small ruminants. Recently, novel Anaplasma variants related to A. phagocytophilum have been reported in ruminants from Tunisia, Italy, South Korea, Japan, and China. Based on 16S rRNA and groEL genes and sequencing, we screened the frequency of A. phagocytophilum and related variants in 433 apparently healthy small ruminants in Turkey. Anaplasma spp. overall infection rates were 27.9% (121/433 analyzed samples). The frequency of A. phagocytophilum and A. phagocytophilum-like 1 infections was 1.4% and 26.5%, respectively. No A. phagocytophilum-like 2 was detected in the tested animals. The prevalence of Anaplasma spp. was comparable in species, and no significant difference was detected between sheep and goats, whereas the prevalence significantly increased with tick infestation. Sequencing confirmed PCR-RFLP data and showed the presence of A. phagocytophilum and A. phagocytophilum-like-1 variant in the sampled animals. Phylogeny-based on 16S rRNA gene revealed the A. phagocytophilum-like 1 in a separate clade together with the previous isolates detected in small ruminants and ticks. In this work, A. phagocytophilum-like 1 has been detected for the first time in sheep and goats from Turkey. This finding revealed that the variant should be considered in the diagnosis of caprine and ovine anaplasmosis.

Changes in oral microbial profiles after periodontal treatment as determined by molecular analysis of 16S rRNA genes

2004 ◽  
Vol 53 (6) ◽  
pp. 563-571 ◽  
Author(s):  
Mitsuo Sakamoto ◽  
Yi Huang ◽  
Mayuko Ohnishi ◽  
Makoto Umeda ◽  
Isao Ishikawa ◽  
...  
Keyword(s):  
16S Rrna ◽  
Molecular Analysis ◽  
Periodontal Treatment ◽  
16S Rrna Genes ◽  
Rrna Genes

scholarly journals MOLECULAR ANALYSIS IN CHILEAN COMMERCIAL GASTROPODS BASED ON 16S rRNA, COI AND ITS1-5.8S rDNA-ITS2 SEQUENCES

2009 ◽  
Vol 73 (1) ◽  
Author(s):  
Felipe Aguilera-Muñoz ◽  
Fabiola Lafarga-Cruz ◽  
Cristian Gallardo-Escárate
Keyword(s):  
16S Rrna ◽  
Molecular Analysis ◽  
5.8S Rdna ◽  
Rdna Its2

scholarly journals Safety and efficacy of ChAdOx1 RVF vaccine against Rift Valley fever in pregnant sheep and goats

npj Vaccines ◽  
2019 ◽  
Vol 4 (1) ◽  
Author(s):  
Anna Stedman ◽  
Daniel Wright ◽  
Paul J. Wichgers Schreur ◽  
Madeleine H. A. Clark ◽  
Adrian V. S. Hill ◽  
...  
Keyword(s):  
Rift Valley ◽  
Rift Valley Fever ◽  
Rift Valley Fever Virus ◽  
Febrile Illness ◽  
Neutralizing Antibody ◽  
High Titre ◽  
Valley Fever ◽  
Sheep And Goats ◽  
Pregnant Sheep ◽  
Human Use

Abstract Rift Valley fever virus (RVFV) is a zoonotic mosquito-borne virus that was first discovered in Kenya in 1930 and has since spread to become endemic in much of Africa and the Arabian Peninsula. Rift Valley fever (RVF) causes recurrent outbreaks of febrile illness associated with high levels of mortality and poor outcomes during pregnancy—including foetal malformations, spontaneous abortion and stillbirths—in livestock, and associated with miscarriage in humans. No vaccines are available for human use and those licensed for veterinary use have potential drawbacks, including residual virulence that may contraindicate their use in pregnancy. To address this gap, we previously developed a simian adenovirus vectored vaccine, ChAdOx1 RVF, that encodes RVFV envelope glycoproteins. ChAdOx1 RVF is fully protective against RVF in non-pregnant livestock and is also under development for human use. Here, we now demonstrate that when administered to pregnant sheep and goats, ChAdOx1 RVF is safe, elicits high titre RVFV neutralizing antibody, and provides protection against viraemia and foetal loss, although this protection is not as robust for the goats. In addition, we provide a description of RVFV challenge in pregnant goats and contrast this to the pathology observed in pregnant sheep. Together, our data further support the ongoing development of ChAdOx1 RVF vaccine for use in livestock and humans.

Polyvalent fingerprint based molecular surveillance methods for drinking water supply systems

2008 ◽  
Vol 8 (5) ◽  
pp. 527-532 ◽  
Author(s):  
K. Henne ◽  
L. Kahlisch ◽  
J. Draheim ◽  
I. Brettar ◽  
M. G. Höfle
Keyword(s):  
Drinking Water ◽  
16S Rrna ◽  
Water Supply ◽  
Molecular Analysis ◽  
Tap Water ◽  
Drinking Water Supply ◽  
Water Supply Systems ◽  
Rrna Gene ◽  
Monitoring Tool ◽  
Supply Systems

Despite the relevance for public health, surveillance of drinking water supply systems (DWSS) in Europe is mainly achieved by cultivation based detection of indicator bacteria. The study presented here demonstrates the use of molecular analysis based on fingerprints of DNA extracted from drinking water bacteria as a valuable monitoring tool of DWSS and was exemplified for a DWWS in Northern Germany. The analysis of the bacterial community of drinking water was performed by a set of 16S rRNA gene based fingerprints, sequence analysis of relevant bands and phylogenetic assignment of the 16S rRNA sequences. We assessed the microflora of drinking water originating from two reservoirs in the Harz Mountains. The taxonomic composition of the bacterial communities from both reservoirs was very different at the species level reflecting the different limnological conditions. Detailed analysis of the seasonal community dynamics of the tap water revealed a significant influence of both source waters on the composition of the microflora and demonstrated the relevance of the raw water microflora for the drinking water reaching the consumer. According to our experience, molecular analysis based on fingerprints of different degrees of resolution can be considered as a valuable monitoring tool of DWSS.

Mammary uptake and metabolism of progesterone in goats and its effect on milk progesterone concentrations during the oestrous cycle and early pregnancy

1983 ◽  
Vol 98 (2) ◽  
pp. 263-270 ◽  
Author(s):  
R. J. Holdsworth ◽  
R. B. Heap ◽  
J. Goode ◽  
M. Peaker ◽  
D. E. Walters
Keyword(s):  
Mammary Gland ◽  
Thin Layer ◽  
Early Pregnancy ◽  
Oestrous Cycle ◽  
Plasma Samples ◽  
Milk Samples ◽  
Layer Chromatography ◽  
Uptake And Metabolism ◽  
In Pregnancy ◽  
Venous Plasma

Following the observation that the concentration of progesterone in goats' milk differs appreciably according to the specificity of the antiserum used in a non-extraction (direct) radioimmunoassay, experiments were carried out to find an explanation for these results. Milk and plasma samples were collected during the oestrous cycle and during an equivalent period of pregnancy after a fertile mating. Samples were analysed by a direct radioimmunoassay using two antisera, 18/3 which is highly specific for progesterone and 465/6 which is less specific, and by radioimmunoassay of fractions isolated by thin-layer chromatography (TLC). Values obtained for milk and plasma samples collected during the oestrous cycle and early pregnancy were similar, except that values for milk samples measured with antiserum 465/6 were higher in pregnancy compared to those obtained during the oestrous cycle. Values obtained for milk and plasma with antiserum 465/6 were significantly higher than those obtained with 18/3 (P<0·001). After TLC this difference was found to be due principally to the presence of compound(s) with chromatographic properties identical to 5-pregnanedione(s). A comparison of the concentration measured in arterial and mammary venous plasma and in milk showed that about 25% of progesterone (5·7 nmol/min) was extracted by the mammary gland, and that substantial amounts of immunoreactive metabolites of progesterone are secreted into milk with only small quantities being transferred into mammary vein plasma.

Microbial Diversity in Milk of Women With Mastitis: Potential Role of Coagulase-Negative Staphylococci, Viridans Group Streptococci, and Corynebacteria

2017 ◽  
Vol 33 (2) ◽  
pp. 309-318 ◽  
Author(s):  
Pilar Mediano ◽  
Leonides Fernández ◽  
Esther Jiménez ◽  
Rebeca Arroyo ◽  
Irene Espinosa-Martos ◽  
...  
Keyword(s):  
16S Rrna ◽  
16S Rrna Gene ◽  
Microbial Diversity ◽  
Bacterial Species ◽  
Total Bacterial Count ◽  
Rrna Gene ◽  
Coagulase Negative Staphylococci ◽  
Milk Samples ◽  
Lactational Mastitis ◽  
Viridans Group Streptococci

Background: Lactational mastitis constitutes a significant cause of premature weaning. However, its etiology, linked to the presence of pathogenic microorganisms, has been scarcely reported. Research aim: The aim of this study was to describe the microbial diversity in milk samples from women suffering from lactational mastitis and to identify more accurately a collection of isolates belonging to coagulase-negative staphylococci, streptococci, and coryneform bacteria. Methods: This is a cross-sectional descriptive one-group study. A total of 5,009 isolates from 1,849 mastitis milk samples was identified by culture, biochemical, and/or molecular methods at the species or genus level. A more precise identification of a collection of 211 isolates was carried out by 16S rRNA gene sequencing. Results: Mean total bacterial count in milk samples was 4.11 log10 colony-forming units/ml, 95% confidence interval [4.08, 4.15]. Staphylococcus epidermidis was the most common species being isolated from 91.56% of the samples, whereas Staphylococcus aureus was detected in 29.74%. Streptococci and corynebacteria constituted the second (70.20%) and third (16.60%) most prevalent bacterial groups, respectively, found in this study. In contrast, Candida spp. was present in only 0.54% of the samples. Sequencing of the 16S rRNA gene revealed a high diversity of bacterial species among identified isolates. Conclusion: Many coagulase-negative staphylococci, viridans group streptococci, and corynebacteria, usually dismissed as contaminant bacteria, may play an important role as etiologic agents of mastitis. Proper diagnosis of mastitis should be established after performing microbiological testing of milk based on standardized procedures. A reliable analysis must identify the mastitis-causing pathogen(s) at the species level and its(their) concentration(s).

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