scholarly journals SSR Polymorphism Survey between CRMS31A and Aruna (MO8) for Marker Assisted Backcross Breeding in Rice

2019 ◽  
Vol 8 (11) ◽  
pp. 2555-2563
Author(s):  
T.S. Lachyan ◽  
V.G. Jayalekshmy ◽  
Swapna Alex
Keyword(s):  
Backcross Breeding ◽  
Ssr Polymorphism ◽  
Marker Assisted Backcross Breeding

Improvement of Bacterial Blight Resistance in Rice Cultivars Jyothi and IR50 via Marker-Assisted Backcross Breeding

2008 ◽  
Vol 21 (1) ◽  
pp. 101-116 ◽  
Author(s):  
S. Bharathkumar ◽  
R. S. David Paulraj ◽  
P. V. Brindha ◽  
S. Kavitha ◽  
S. S. Gnanamanickam
Keyword(s):  
Bacterial Blight ◽  
Blight Resistance ◽  
Rice Cultivars ◽  
Bacterial Blight Resistance ◽  
Backcross Breeding ◽  
Marker Assisted Backcross Breeding

scholarly journals Recovery of Recurrent Parent Genome in a Marker-Assisted Backcrossing Against Rice Blast and Blight Infections Using Functional Markers and SSRs

Plants ◽  
2020 ◽  
Vol 9 (11) ◽  
pp. 1411
Author(s):  
Samuel Chibuike Chukwu ◽  
Mohd Y. Rafii ◽  
Shairul Izan Ramlee ◽  
Siti Izera Ismail ◽  
Yusuff Oladosu ◽  
...  
Keyword(s):  
Resistance Genes ◽  
Blast Resistance ◽  
Leaf Blight ◽  
Bacterial Leaf Blight ◽  
Functional Markers ◽  
Recurrent Parent ◽  
Selected Lines ◽  
Recurrent Parent Genome ◽  
Backcross Breeding ◽  
Marker Assisted Backcross Breeding

The most vital aspect of marker-assisted backcross breeding is the recurrent parent genome recovery. This enables the selection of only parents with recovered recipient/recurrent parent genome in addition to the targeted genes. The recurrent parent genome recovery (RPGR) ensures that non-desirable genomic segments are removed while the gene of interest is sustained in the recombined progenies without further segregations. This work was aimed at quantifying the RPGR of backcross populations with introgression of bacterial leaf blight resistance genes. Putra-1, a Malaysian elite variety, high yielding with inherent resistance to blast but susceptible to bacterial leaf blight (BLB), was crossed with IRBB60 which is resistant to BLB disease. The IRBB60 has four Xoo resistance genes—Xa4, xa5, xa13 and Xa21. Tightly linked polymorphic functional and SSR markers were used for foreground selection at every stage of backcrossing to select progenies with introgressed target genes. Background selection was done to quantify the percentage of RPGR in the selected lines using 79 confirmed polymorphic microsatellites. Result obtained showed that the percentage of RPGR was 80.11% at BC1F1, 95.30% at BC2F1 and 95.9% at BC2F2. The introgression of Xa4, xa5, xa13 and Xa21 Xoo resistance genes were faster through the adopted marker-assisted backcross breeding compared to what could be obtained through conventional breeding. All the 16 selected lines displayed resistance to BLB with three lines showing high resistance to the disease. The blast resistance contained in the genetic background of Putra-1 was also sustained in all the selected lines. The newly developed lines were recommended as new rice varieties for commercial cultivation.

Application of a simplified marker-assisted backcross technique for hybrid breeding in rice

Biologia ◽  
2014 ◽  
Vol 69 (4) ◽  
Author(s):  
Zhijuan Ji ◽  
Jianyao Shi ◽  
Yuxiang Zeng ◽  
Qian Qian ◽  
Changdeng Yang
Keyword(s):  
Bacterial Blight ◽  
Hybrid Rice ◽  
Hybrid Breeding ◽  
Blight Resistance ◽  
Breeding Period ◽  
Background Selection ◽  
Bacterial Blight Resistance ◽  
Breeding Technique ◽  
Backcross Breeding ◽  
Marker Assisted Backcross Breeding

AbstractHybrid rice has contributed greatly to the self-sufficiency of the food supply in China. However, bacterial blight is a major disease that limits hybrid rice production in China. The study was conducted to develop an efficient breeding technique to improve the bacterial blight resistance in hybrid rice. A marker-assisted backcross breeding technique was adopted to improve HN189, an elite restorer line containing the Pi1 gene. This breeding technique was simplified to foreground selection with only one generation of backcrossing and background selection based on phenotypic selection. A novel bacterial blight resistance gene, Xa23, was introgressed into HN189. Two improved restorer lines, HBH145 (with one generation of backcrossing) and HBH146 (with two generations of backcrossing), were obtained that had a significant bacterial blight resistance advantage over HN189. The corresponding hybrid combination Tianyou H145 (Tianfeng A / HBH145) was certified one year earlier than Qianyou H146 (Qianjiang 1A / HBH146). The use of the marker-assisted backcross breeding technique with one generation of backcrossing and without background selection in rice breeding programs shortened the breeding period of the rice.

scholarly journals Introgression of drought tolerance QTLs through marker assisted backcross breeding in wheat (Triticum aestivum L.)

2020 ◽  
Vol 80 (02) ◽  
Author(s):  
Leena Todkar ◽  
Harikrishna . ◽  
G. P. Singh ◽  
Neelu Jain ◽  
P. K. Singh ◽  
...  
Keyword(s):  
Drought Tolerance ◽  
Agronomic Traits ◽  
Wheat Variety ◽  
Triticum Aestivum L ◽  
Recurrent Parent ◽  
Background Selection ◽  
Drought Tolerant ◽  
Backcross Breeding ◽  
Genomic Regions ◽  
Marker Assisted Backcross Breeding

The present study reports the introgression of the genomic regions linked with drought tolerance traits viz., NDVI, staygreen, chlorophyll content/chlorophyll fluorescence and yield from a drought tolerant parent HI1500 in to a popular high yielding but drought susceptible wheat variety GW322 following the marker assisted backcross breeding. Background selection with 109 polymorphic SSR markers accelerated genome recovery of recurrent parent which ranged from 72.14 to 86.9% in BC1F1, 90.33 to 92.02% in BC2F1 and 91.6 to 94.95% with an average of 93.5% in BC2F2 generation. Eighteen homozygous BC2F3 progenies were found to be phenotypically superior for morpho-physiological and agronomic traits over the recurrent parent GW322.

scholarly journals Marker-Assisted Pyramiding of Downy Mildew-Resistant Gene Ppa3 and Black Rot-Resistant Gene Xca1bo in Popular Early Cauliflower Variety Pusa Meghna

2021 ◽  
Vol 12 ◽  
Author(s):  
Partha Saha ◽  
Chandrika Ghoshal ◽  
Namita Das Saha ◽  
Aakriti Verma ◽  
Mohita Srivastava ◽  
...  
Keyword(s):  
Downy Mildew ◽  
Black Rot ◽  
Breeding Method ◽  
Resistant Gene ◽  
Yield And Quality ◽  
Resistant Genes ◽  
Backcross Breeding ◽  
Hybridization Programme ◽  
Marker Assisted Backcross Breeding

Cauliflower is an important extensively grown cool season vegetable in India. Black rot and downy mildew are major devastating diseases reducing yield and quality of the crop. To tackle these through host plant resistance, a marker-assisted backcross breeding method was followed to pyramid a black rot-resistant gene (Xca1bo) and a downy mildew-resistant gene (Ppa3) from donors BR-161 and BR-2, respectively, into the background of Pusa Meghna cauliflower cultivar. Marker-assisted backcross breeding was followed up to BC2 generation using SCAR marker ScOPO-04833 and SSR marker BoGMS0624 for black rot and downy mildew resistance genes in foreground selection, respectively. In background selection, at each stage of backcrossing, 47 parental polymorphic SSR markers were used. The graphical genotyping of the five two-gene (Xca1boXca1boPpa3Ppa3) homozygous BC2F2 plants showed an average recovery of 85.44% of the Pusa Meghna genome with highest genome recovery of 91.7%. The genome contribution of donor parents (BR-161 and BR-2) was 8.26 with 6.34% of residual heterozygousity. The backcross derived pyramided lines BC2F2:3-7-16 and BC2F2:3-7-33 showed high resistance to both the diseases and exhibited higher yield and vitamin C content as compared with recipient parent Pusa Meghna. It is, therefore, evident from this study that resistant genes can be introgressed successfully into a Pusa Meghna cultivar without any yield penalty, benefitting farmers with reduced input cost and consumers with chemical residue free produce. Besides, the pyramided lines carrying dominant resistant genes can be exploited in a hybridization programme to develop hybrid(s) in cauliflower.

scholarly journals Transcriptome sequencing assisted discovery and computational analysis of novel SNPs associated with flowering in Raphanus sativus in-bred lines for marker-assisted backcross breeding

2019 ◽  
Vol 6 (1) ◽  
Author(s):  
Jinhee Kim ◽  
Abinaya Manivannan ◽  
Do-Sun Kim ◽  
Eun-Su Lee ◽  
Hye-Eun Lee
Keyword(s):  
Genetic Selection ◽  
Inbred Lines ◽  
Snp Markers ◽  
Functional Annotations ◽  
Specific Pcr ◽  
Polymorphic Snps ◽  
Allele Specific ◽  
Seed Purity Test ◽  
Backcross Breeding ◽  
Marker Assisted Backcross Breeding

Abstract The sequencing of radish genome aids in the better understanding and tailoring of traits associated with economic importance. In order to accelerate the genomics assisted breeding and genetic selection, transcriptomes of 33 radish inbred lines with diverse traits were sequenced for the development of single nucleotide polymorphic (SNP) markers. The sequence reads ranged from 2,560,543,741 bp to 20,039,688,139 bp with the GC (%) of 47.80–49.34 and phred quality score (Q30) of 96.47–97.54%. A total of 4951 polymorphic SNPs were identified among the accessions after stringent filtering and 298 SNPs with efficient marker assisted backcross breeding (MAB) markers were generated from the polymorphic SNPs. Further, functional annotations of SNPs revealed the effects and importance of the SNPs identified in the flowering process. The SNPs were predominantly associated with the four major flowering related transcription factors such as MYB, MADS box (AG), AP2/EREB, and bHLH. In addition, SNPs in the vital flowering integrator gene (FT) and floral repressors (EMBRYONIC FLOWER 1, 2, and FRIGIDA) were identified among the radish inbred lines. Further, 50 SNPs were randomly selected from 298 SNPs and validated using Kompetitive Allele Specific PCR genotyping system (KASP) in 102 radish inbred lines. The homozygosity of the inbred lines varied from 56 to 96% and the phylogenetic analysis resulted in the clustering of inbred lines into three subgroups. Taken together, the SNP markers identified in the present study can be utilized for the discrimination, seed purity test, and adjusting parental combinations for breeding in radish.

scholarly journals Introgression of qDTY1.1 Governing Reproductive Stage Drought Tolerance into an Elite Basmati Rice Variety “Pusa Basmati 1” through Marker Assisted Backcross Breeding

Agronomy ◽  
2021 ◽  
Vol 11 (2) ◽  
pp. 202
Author(s):  
Gaurav Dhawan ◽  
Aruna Kumar ◽  
Priyanka Dwivedi ◽  
Subbaiyan Gopala Krishnan ◽  
Madan Pal ◽  
...  
Keyword(s):  
Drought Stress ◽  
Reproductive Stage ◽  
Chromosome 1 ◽  
Basmati Rice ◽  
Yield Potential ◽  
Yield Reduction ◽  
Recurrent Parent ◽  
Backcross Breeding ◽  
Selection For ◽  
Marker Assisted Backcross Breeding

Drought stress at the reproductive stage in rice is one of the most important cause for yield reduction, affecting both productivity and quality. All Basmati rice varieties, including the popular cultivar “Pusa Basmati 1 (PB1)” is highly sensitive to reproductive stage drought stress (RSDS). We report for the first time, improvement of a Basmati cultivar for RSDS tolerance, with the introgression of a major quantitative trait locus (QTL), “qDTY1.1” into PB1. The QTL was sourced from an aus variety, Nagina 22 (N22). A microsatellite (simple sequence repeat (SSR)) marker “RM 431” located at telomeric end (38.89 mb) of chromosome 1, and located within a 1.04 mb QTL region was employed for foreground selection for qDTY1.1 in the marker assisted backcross breeding process. A set of 113 SSR markers polymorphic between N22 and PB1 were utilized for background selection to ensure higher recurrent parent genome recovery. After three backcrosses followed by five generations of selfing, eighteen near isogenic lines (NILs) were developed, through combinatory selection for agro-morphological, grain and cooking quality traits. The NILs were evaluated for three consecutive Kharif seasons, 2017, 2018 and 2019 under well-watered and drought stress conditions. RSDS tolerance and yield stability indicated that P1882-12-111-3, P1882-12-111-5, P1882-12-111-6, P1882-12-111-7, P1882-12-111-12, P1882-12-111-15 and P1882-12-111-17 were best in terms of overall agronomic and grain quality under RSDS. Additionally, NILs exhibited high yield potential under normal condition as well. The RSDS tolerant Basmati NILs with high resilience to water stress, is a valuable resource for sustaining Basmati rice production under water limiting production environments.

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