scholarly journals Automatic Segmentation of Pelvic Cancers using Deep Learning: State-of-the-Art Approaches and Challenges

Author(s):  
Reza Kalantar ◽  
Gigin Lin ◽  
Jessica M Winfield ◽  
Christina Messiou ◽  
Susan Lalondrelle ◽  
...  

The recent rise of deep learning (DL) and its promising capabilities in capturing non-explicit detail from large datasets have attracted substantial research attention in the field of medical image processing. DL provides ground for technology development for computer-aided diagnosis and segmentation in radiology and radiation oncology. Amongst the anatomical locations where recent auto-segmentation algorithms have been employed, the pelvis remains one of the most challenging due to large intra- and inter-patient soft-tissue variabilities. This review provides a comprehensive and clinically-oriented overview of DL-based segmentation studies for bladder, prostate, cervical and rectal cancers, highlighting the key findings, challenges and limitations.

Diagnostics ◽  
2021 ◽  
Vol 11 (11) ◽  
pp. 1964
Author(s):  
Reza Kalantar ◽  
Gigin Lin ◽  
Jessica M. Winfield ◽  
Christina Messiou ◽  
Susan Lalondrelle ◽  
...  

The recent rise of deep learning (DL) and its promising capabilities in capturing non-explicit detail from large datasets have attracted substantial research attention in the field of medical image processing. DL provides grounds for technological development of computer-aided diagnosis and segmentation in radiology and radiation oncology. Amongst the anatomical locations where recent auto-segmentation algorithms have been employed, the pelvis remains one of the most challenging due to large intra- and inter-patient soft-tissue variabilities. This review provides a comprehensive, non-systematic and clinically-oriented overview of 74 DL-based segmentation studies, published between January 2016 and December 2020, for bladder, prostate, cervical and rectal cancers on computed tomography (CT) and magnetic resonance imaging (MRI), highlighting the key findings, challenges and limitations.


2021 ◽  
Vol 7 (2) ◽  
pp. 19
Author(s):  
Tirivangani Magadza ◽  
Serestina Viriri

Quantitative analysis of the brain tumors provides valuable information for understanding the tumor characteristics and treatment planning better. The accurate segmentation of lesions requires more than one image modalities with varying contrasts. As a result, manual segmentation, which is arguably the most accurate segmentation method, would be impractical for more extensive studies. Deep learning has recently emerged as a solution for quantitative analysis due to its record-shattering performance. However, medical image analysis has its unique challenges. This paper presents a review of state-of-the-art deep learning methods for brain tumor segmentation, clearly highlighting their building blocks and various strategies. We end with a critical discussion of open challenges in medical image analysis.


2021 ◽  
Vol 9 (10) ◽  
pp. 1294-1300
Author(s):  
Aigli Korfiati ◽  
◽  
Giorgos Livanos ◽  
Christos Konstandinou ◽  
Sophia Georgiou ◽  
...  

Computer-aided diagnosis (CAD) systems based on deep learning approaches are now feasible due to the availability of big data and the availability of powerful computational resources.The medical image-based CAD systems are of great interest in numerous diseases, but especially for skin cancer diagnosis, deep learning models have been mostly developed for dermoscopy images. Models for clinical images are few, mainly due to the unavailability of big volumes of relevant data. However, CAD systems able to classify skin lesions from clinical images would be of great valueboth for the population and clinicians as an initial early screening of lesions that would leadpatients to visiting a dermatologist in case of suspicious lesions. This is even more pronounced in areas where there is lack of dermoscopy instruments. Thus, in this paper, we aimed to build a classifier based on bothdermoscopy and clinical images able to discriminate skin cancer from skin lesions. The classification is made among three benign and two malignant categories, which include Nevus, Benign but not nevus, Benign but suspicious for malignancy, Melanoma and Non-Melanocytic Carcinoma.The proposed deep learning classifier achieves an Area Under Curve ranging between 0.75 and 0.9 for the five examined categories.


2020 ◽  
Vol 20 (03) ◽  
pp. 2050021
Author(s):  
P. Nikesh ◽  
G. Raju

Efficient skin lesion segmentation algorithms are required for computer aided diagnosis of skin cancer. Several algorithms were proposed for skin lesion segmentation. The existing algorithms are short of achieving ideal performance. In this paper, a novel semi-automatic segmentation algorithm is proposed. The fare concept of the proposed is 8-directional search based on threshold for lesion pixel, starting from a user provided seed point. The proposed approach is tested on 200 images from PH2 and 900 images from ISBI 2016 datasets. In comparison to a chosen set of algorithms, the proposed approach gives high accuracy and specificity values. A significant advantage of the proposed method is the ability to deal with discontinuities in the lesion.


2019 ◽  
Vol 9 (3) ◽  
pp. 569 ◽  
Author(s):  
Hyunho Hwang ◽  
Hafiz Zia Ur Rehman ◽  
Sungon Lee

Skull stripping in brain magnetic resonance imaging (MRI) is an essential step to analyze images of the brain. Although manual segmentation has the highest accuracy, it is a time-consuming task. Therefore, various automatic segmentation algorithms of the brain in MRI have been devised and proposed previously. However, there is still no method that solves the entire brain extraction problem satisfactorily for diverse datasets in a generic and robust way. To address these shortcomings of existing methods, we propose the use of a 3D-UNet for skull stripping in brain MRI. The 3D-UNet was recently proposed and has been widely used for volumetric segmentation in medical images due to its outstanding performance. It is an extended version of the previously proposed 2D-UNet, which is based on a deep learning network, specifically, the convolutional neural network. We evaluated 3D-UNet skull-stripping using a publicly available brain MRI dataset and compared the results with three existing methods (BSE, ROBEX, and Kleesiek’s method; BSE and ROBEX are two conventional methods, and Kleesiek’s method is based on deep learning). The 3D-UNet outperforms two typical methods and shows comparable results with the specific deep learning-based algorithm, exhibiting a mean Dice coefficient of 0.9903, a sensitivity of 0.9853, and a specificity of 0.9953.


Author(s):  
Kanchan Sarkar ◽  
Bohang Li

Pixel accurate 2-D, 3-D medical image segmentation to identify abnormalities for further analysis is on high demand for computer-aided medical imaging applications. Various segmentation algorithms have been studied and applied in medical imaging for many years, but the problem remains challenging due to growing a large number of variety of applications starting from lung disease diagnosis based on x-ray images, nucleus detection, and segmentation based on microscopic pictures to kidney tumour segmentation. The recent innovation in deep learning brought revolutionary advances in computer vision. Image segmentation is one such area where deep learning shows its capacity and improves the performance by a larger margin than its successor. This chapter overviews the most popular deep learning-based image segmentation techniques and discusses their capabilities and basic advantages and limitations in the domain of medical imaging.


Author(s):  
Vincent Christlein ◽  
Florin C. Ghesu ◽  
Tobias Würfl ◽  
Andreas Maier ◽  
Fabian Isensee ◽  
...  

2021 ◽  
Vol 12 (24) ◽  
pp. 25
Author(s):  
Andrea Felicetti ◽  
Marina Paolanti ◽  
Primo Zingaretti ◽  
Roberto Pierdicca ◽  
Eva Savina Malinverni

<div class="page" title="Page 1"><div class="layoutArea"><div class="column"><p class="VARAbstract">Mosaic is an ancient type of art used to create decorative images or patterns combining small components. A digital version of a mosaic can be useful for archaeologists, scholars and restorers who are interested in studying, comparing and preserving mosaics. Nowadays, archaeologists base their studies mainly on manual operation and visual observation that, although still fundamental, should be supported by an automatized procedure of information extraction. In this context, this research explains improvements which can change the manual and time-consuming procedure of mosaic tesserae drawing. More specifically, this paper analyses the advantages of using Mo.Se. (Mosaic Segmentation), an algorithm that exploits deep learning and image segmentation techniques; the methodology combines U-Net 3 Network with the Watershed algorithm. The final purpose is to define a workflow which establishes the steps to perform a robust segmentation and obtain a digital (vector) representation of a mosaic. The detailed approach is presented, and theoretical justifications are provided, building various connections with other models, thus making the workflow both theoretically valuable and practically scalable for medium or large datasets. The automatic segmentation process was tested with the high-resolution orthoimage of an ancient mosaic by following a close-range photogrammetry procedure. Our approach has been tested in the pavement of St. Stephen's Church in Umm ar-Rasas, a Jordan archaeological site, located 30 km southeast of the city of Madaba (Jordan). Experimental results show that this generalized framework yields good performances, obtaining higher accuracy compared with other state-of-the-art approaches. Mo.Se. has been validated using publicly available datasets as a benchmark, demonstrating that the combination of learning-based methods with procedural ones enhances segmentation performance in terms of overall accuracy, which is almost 10% higher. This study’s ambitious aim is to provide archaeologists with a tool which accelerates their work of automatically extracting ancient geometric mosaics.</p><p><strong>Highlights:</strong></p><ul><li><p>A Mo.Se. (Mosaic Segmentation) algorithm is described with the purpose to perform robust image segmentation to automatically detect tesserae in ancient mosaics.</p></li><li><p>This research aims to overcome manual and time-consuming procedure of tesserae segmentation by proposing an approach that uses deep learning and image processing techniques, obtaining a digital replica of a mosaic.</p></li><li><p>Extensive experiments show that the proposed framework outperforms state-of-the-art methods with higher accuracy, even compared with publicly available datasets.</p></li></ul></div></div></div>


Author(s):  
Aparna .

A naturalist is someone who studies the patterns of nature identify different kingdom of flora and fauna in the nature. Being able to identify the flora and fauna around us often leads to an interest in protecting wild species, collecting and sharing information about the species we see on our travels is very useful for conserving groups like NCC. Deep-learning based techniques and methods are becoming popular in digital naturalist studies, as their performance is superior in image analysis fields, such as object detection, image classification, and semantic segmentation. Deep-learning techniques have achieved state of-the -art performance for automatic segmentation of digital naturalist through multi-model image sensing. Our task as naturalist has grown widely in the field of natural-historians. It has increased from identification to saviours as well. Not only identifying flora and fauna but also to know about their habits, habitats, living and grouping lead to fetching services for protection as well.


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