scholarly journals Comparative Analysis of the Transcriptomes of Three Varieties Provides Insights Into the Diversity of the Heat Response Mechanisms in Clematis Species

2020 ◽  
Author(s):  
Hao Zhang ◽  
Changhua Jiang ◽  
Long Zhang ◽  
RuoNan Gai ◽  
Siyuan Peng ◽  
...  
Keyword(s):  
Heat Stress ◽  
Heat Shock ◽  
Expression Profiles ◽  
Differentially Expressed ◽  
Expression Levels ◽  
Protein Protein Interaction ◽  
Regulated Expression ◽  
Heat Response ◽  
Japanese Gardens ◽  
Shock Proteins

Abstract Background: Clematis species are commonly grown in western and Japanese gardens. Heat stress can inhibit many physiological processes mediating plant growth and development. The mechanism regulating responses to heat has been well characterized in Arabidopsis thaliana and some crops, but not in horticultural plants, including Clematis species. Results: In this study, we identified a heat-sensitive Clematis variety (Clematis alpina ‘Stolwijk Gold’) and two heat-tolerant Clematis varieties (Clematis vitalba and Clematis viticella ‘Polish Spirit’) based on heat-related physiological indices. The leaf transcriptomes under normal and heat stress conditions were analyzed by RNA sequencing. Additionally, heat tolerance-related genes (HTGs) were identified and their expression levels were analyzed. Following heat treatments, 41.67% of the differentially expressed HTGs in Stolwijk Gold had down-regulated expression levels, whereas only 9.80% and 21.36% of the differentially expressed HTGs in C. vitalba and Polish Spirit, respectively, had the same trend. The HTGs’ co-expression and protein–protein interaction networks revealed that the hub genes regulating Clematis resistance to heat stress encode heat shock transcription factors (HSFs) and heat shock proteins (HSPs). Moreover, the sensitivity of Stolwijk Gold to heat is mainly due to the heat-induced down-regulated expression of these genes. On the basis of phylogenetic and expression analyses, the differentially expressed HSF and HSP genes in the three examined varieties were divided into three and four clades, respectively, with similar expression profiles common among orthologous family members. Furthermore, we identified two HSF classes in C. vitalba that may have diverse functions influencing heat resistance. Conclusions: Our study provides insights into the diversity of the heat response mechanisms among Clematis species and may be useful for breeding new heat-resistant ornamental Clematis varieties.

scholarly journals Insights Into Heat Response Mechanisms in Clematis Species: Physiological Analysis, Expression Profiles and Function Verification

2021 ◽  
Author(s):  
Hao Zhang ◽  
Changhua Jiang ◽  
Rui Wang ◽  
Long Zhang ◽  
Ruonan Gai ◽  
...  
Keyword(s):  
Heat Stress ◽  
Heat Shock ◽  
Expression Profiles ◽  
Interaction Network ◽  
Differentially Expressed ◽  
Genes Encoding ◽  
Heat Response ◽  
Physiological Analysis ◽  
Japanese Gardens ◽  
Shock Proteins

Abstract Clematis species are commonly grown in western and Japanese gardens. Heat stress can inhibit many physiological processes mediating plant growth and development. The mechanism regulating responses to heat has been well characterized in Arabidopsis thaliana and some crops, but not in horticultural plants, including Clematis species. In this study, we found that Clematis alpina ‘Stolwijk Gold’ was heat-sensitive whereas Clematis vitalba and Clematis viticella ‘Polish Spirit’ were heat-tolerant based on the physiological analyses in heat stress. Transcriptomic profiling identified a set of heat tolerance-related genes (HTGs). Consistent with the observed phenotype in heat stress, 41.43% of the differentially expressed HTGs between heat treatment and control were down-regulated in heat-sensitive cultivar Stolwijk Gold, but only 9.80% and 20.79% of the differentially expressed HTGs in heat resistant C. vitalba and Polish Spirit, respectively. Co-expression network, protein–protein interaction network and phylogenetic analysis revealed that the genes encoding heat shock transcription factors (HSFs) and heat shock proteins (HSPs) played an essential role in Clematis resistance to heat stress. Ultimately, we proposed that two clades of HSFs may have diverse functions in regulating heat resistance from C. vitalba and CvHSFA2-2 could endow different host with high temperature resistance. This study provides first insights into the diversity of the heat response mechanisms among Clematis species.

scholarly journals Exploring Heat-Response Mechanisms of MicroRNAs Based on Microarray Data of Rice Post-meiosis Panicle

2020 ◽  
Vol 2020 ◽  
pp. 1-13
Author(s):  
Yan Peng ◽  
Xianwen Zhang ◽  
Yuewu Liu ◽  
Xinbo Chen
Keyword(s):  
Heat Stress ◽  
Target Genes ◽  
Expression Profiles ◽  
Time Lag ◽  
Interaction Network ◽  
Biological Processes ◽  
Functional Identification ◽  
Protein Protein Interaction ◽  
Heat Response ◽  
Protein Protein Interaction Network

To explore heat response mechanisms of mircoRNAs (miRNAs) in rice post-meiosis panicle, microarray analysis was performed on RNA isolated from rice post-meiosis panicles which were treated at 40°C for 0 min, 10 min, 20 min, 60 min, and 2 h. By integrating paired differentially expressed (DE) miRNAs and mRNA expression profiles, we found that the expression levels of 29 DE-miRNA families were negatively correlated to their 178 DE-target genes. Further analysis showed that the majority of miRNAs in 29 DE-miRNA families resisted the heat stress by downregulating their target genes and a time lag existed between expression of miRNAs and their target genes. Then, GO-Slim classification and functional identification of these 178 target genes showed that (1) miRNAs were mainly involved in a series of basic biological processes even under heat conditions; (2) some miRNAs might play important roles in the heat resistance (such as osa-miR164, osa-miR166, osa-miR169, osa-miR319, osa-miR390, osa-miR395, and osa-miR399); (3) osa-miR172 might play important roles in protecting the rice panicle under the heat stress, but osa-miR437, osa-miR418, osa-miR164, miR156, and miR529 might negatively affect rice fertility and panicle flower; and (4) osa-miR414 might inhibit the flowering gene expression by downregulation of LOC_Os 05g51830 to delay the heading of rice. Finally, a heat-induced miRNA-PPI (protein-protein interaction) network was constructed, and three miRNA coregulatory modules were discovered.

Selection by Genetic Expression Profiles of Desi and Kabuli Chickpea (Cicer arietinum L.) Genotypes Tolerant to High Temperature Stress

2020 ◽  
Author(s):  
A. P. Rodríguez-Vera ◽  
J. A. Acosta-Gallegos ◽  
J. E. Ruiz-Nieto ◽  
V. Montero-Tavera
Keyword(s):  
Heat Stress ◽  
Heat Shock ◽  
Expression Profiles ◽  
Grain Filling ◽  
High Temperature Stress ◽  
Soil Conditions ◽  
Tolerance Index ◽  
Genetic Characteristics ◽  
Induced Genes ◽  
Shock Proteins

Background: Mexico is an important producer of chickpea; however, high temperatures during flowering and grain filling limit seed yield and seed size. Plant adaptation strategies to heat stress depend on climatic and soil conditions, but mainly on the plant genetic characteristics. The increase in heat shock proteins (HSP) production occurs when plants experience an abrupt or gradual increase in temperature in order to whithstand stress with the least damage. Methods: Sixty-five Heat Shock Protein related genes that induce transcription under heat stress were studied according to their expression profiles. This strategy allows for the selection of chickpea genotypes bearing potential heat stress tolerance. Based on the number of overexpressed (induced) genes and on its level of expression, a tolerance index was calculated. Result: Tolerant desi genotypes were: ICC 10259, ICC 13020, ICC 4958 and Annigeri; and in the kabuli type outstanding genotypes were: Mazocahui, ICCV 2, Blanco Sinaloa 92, Tequi Blanco 95, Combo 743 and CUGA 08-1210. These genotypes showed profiles with a higher number of induced genes and higher Tolerance Indexes. These genotypes will be further evaluated in the field and under controlled conditions and in the near future used as parental stocks.

Examination the effect of post-hatch heat-treatment and heat-stress in Transylvanian Naked Neck chicken

2020 ◽  
Author(s):  
Roland Tóth ◽  
Nikolett Tokodyné Szabadi ◽  
Bence Lázár ◽  
Kitti Buda ◽  
Barbara Végi ◽  
...  
Keyword(s):  
Heat Treatment ◽  
Heat Stress ◽  
Heat Shock ◽  
Heat Shock Proteins ◽  
Egg Production ◽  
Sperm Quality ◽  
Heat Shock Factors ◽  
Expression Levels ◽  
Heat Treated ◽  
Shock Proteins

Abstract Background One of the most critical global problem nowadays is the increased environmental temperature. Agriculture is very susceptible to this adverse effect because the productivity of animals and poultry decreased. Although several studies reported the effects of heat-stress in chicken, the expression profile of heat-shock proteins and heat shock factors was not investigated in the gonads and germ cells of Transylvanian Naked Neck chickens. Methods In the first experiment, 24 hours after hatching 80 chicks were heat treated on 38.5oC ambient temperature with 60% humidity for 12 hours. After maturation, their primary productivity parameters, such as egg production, abnormalities in embryo development, sperm quantity, concentration, and motility were studied following two weeks of heat-stress on 30 °C room temperature. In the second experiment, the thermal manipulation of 60 chicks was the same but 15 treated and 15 control chicks were sacrificed immediately after the treatment. The other 15–15 chickens were raised to maturity. Expression levels for two heat-shock proteins and four heat shock factors were determined by real-time PCR in the gonads of heat-treated and heat-stressed chickens. Results We found that the heat-treated layers had significantly higher egg production than the control group in heat-stressed conditions. In cockerels, the sperm quality did not differ significantly between the heat-treated and heat-stressed group and the heat-stressed but not heat-treated group. We examined the expression pattern of HSPs and HSFs in the gonads. We found that the expression of HSP90 and HSF4 increased significantly (p < 0.05) in heat-treated female chick gonads but in adult females the expression of HSF2 and HSF3 were significantly lower compared to the control. In case of adult heat-treated males, the HSP70, HSF1 and HSF3 expression levels showed a significant increase in both gonads, compared to the control expression levels (P < 0.05). Conclusion Heat shock proteins and heat-shock factors protect cells against different stressors, including heat stress. Our findings show a significant effect on egg production but not on the sperm quality after post-hatch heat treatment in heat stress condition. The presented significant differences might be related to the increased expression level of HSP90 and HSF4 in heat-treated chickens.

scholarly journals Developmental and heat stress-regulated expression of HsfA2 and small heat shock proteins in tomato anthers

2009 ◽  
Vol 61 (2) ◽  
pp. 453-462 ◽  
Author(s):  
Filomena Giorno ◽  
Mieke Wolters-Arts ◽  
Stefania Grillo ◽  
Klaus-Dieter Scharf ◽  
Wim H. Vriezen ◽  
...  
Keyword(s):  
Heat Stress ◽  
Heat Shock ◽  
Heat Shock Proteins ◽  
Small Heat Shock Proteins ◽  
Regulated Expression ◽  
Shock Proteins

scholarly journals Proteomic analysis of heat shock proteins in maize (Zea mays L.)

2019 ◽  
Vol 43 (1) ◽  
Author(s):  
Mahmoud Hussien Abou-Deif ◽  
Mohamed Abdel-Salam Rashed ◽  
Kamal Mohamed Khalil ◽  
Fatma El-Sayed Mahmoud
Keyword(s):  
Heat Treatment ◽  
Heat Stress ◽  
Heat Shock ◽  
Heat Shock Proteins ◽  
Proteome Analysis ◽  
High Temperature Stress ◽  
Heat Treatments ◽  
Maize Plants ◽  
Adverse Influence ◽  
Shock Proteins

Abstract Background Maize is one of the important cereal food crops in the world. High temperature stress causes adverse influence on plant growth. When plants are exposed to high temperatures, they produce heat shock proteins (HSPs), which may impart a generalized role in tolerance to heat stress. Proteome analysis was performed in plant to assess the changes in protein types and their expression levels under abiotic stress. The purpose of the study is to explore which proteins are involved in the response of the maize plant to heat shock treatment. Results We investigated the responses of abundant proteins of maize leaves, in an Egyptian inbred line of maize “K1”, upon heat stress through two-dimensional electrophoresis (2-DE) on samples of maize leaf proteome. 2-DE technique was used to recognize heat-responsive protein spots using Coomassie Brilliant Blue (CBB) and silver staining. In 2-D analysis of proteins from plants treated at 45 °C for 2 h, the results manifested 59 protein spots (4.3%) which were reproducibly detected as new spots where did not present in the control. In 2D for treated plants for 4 h, 104 protein spots (7.7%) were expressed only under heat stress. Quantification of spot intensities derived from heat treatment showed that twenty protein spots revealed clear differences between the control and the two heat treatments. Nine spots appeared with more intensity after heat treatments than the control, while four spots appeared only after heat treatments. Five spots were clearly induced after heat treatment either at 2 h or 4 h and were chosen for more analysis by LC-MSMS. They were identified as ATPase beta subunit, HSP26, HSP16.9, and unknown HSP/Chaperonin. Conclusion The results revealed that the expressive level of the four heat shock proteins that were detected in this study plays important roles to avoid heat stress in maize plants.

Localization of metallothionein, heat shock protein (Hsp70), and superoxide dismutase expression in Hemidiaptomus roubaui (Copepoda, Crustacea) exposed to cadmium and heat stress

2007 ◽  
Vol 85 (3) ◽  
pp. 362-371 ◽  
Author(s):  
Martine Liberge ◽  
Roxane-M. Barthélémy
Keyword(s):  
Superoxide Dismutase ◽  
Heat Stress ◽  
Heat Shock ◽  
Metal Binding ◽  
Stress Proteins ◽  
Reproductive Function ◽  
Cadmium Stress ◽  
Specific Distribution ◽  
Freshwater Crustacean ◽  
Shock Proteins

Immunohistochemical methods were applied in the present study to investigate the expression of stress proteins such as metallothioneins (MT), which are metal-binding proteins, and heat shock proteins (Hsp70), as well as an antioxidant enzyme (superoxide dismutase, SOD), in the freshwater crustacean copepod Hemidiaptomus roubaui (Richard, 1888) exposed to cadmium or heat stress. The results show a tissue-specific distribution of MT-like protein after cadmium exposure in the brain and in the nerve cord. Cadmium stress did not provoke inducible Hsp70 or SOD expression. Unlike cadmium, heat stress induced the expression of Hsp70 and SOD in the shell glands, a structure involved in the reproductive function, and more particularly in the formation of the diapause egg envelope. MT expression is not induced in animals exposed to heat stress.

The CRZ-1 Transcription Factor Regulates Hsp 80 Involves in the Acquisition of Thermotolerance, and NCA-2 for Calcium Stress Tolerance in Neurospora Crassa

2021 ◽  
Author(s):  
Avishek Roy ◽  
Ranjan Tamuli
Keyword(s):  
Transcription Factor ◽  
Heat Shock ◽  
Neurospora Crassa ◽  
Stress Condition ◽  
Stress Conditions ◽  
Start Codon ◽  
Expression Levels ◽  
Heat Shock Stress ◽  
Shock Proteins ◽  
Shock Stress

Abstract Heat shock proteins (Hsps) are molecular chaperones and required for survival of organisms under heat stress conditions. In this study, we studied Hsp80, a member of the Hsp90 family, in Neurospora crassa. The expression of hsp80 was severely reduced in the N. crassa calcineurin B subunit RIP-mutant (cnb-1RIP) strains under the heat shock conditions. Furthermore, the expression levels of cnb-1, hsp60, hsp80, and the calcineurin-regulated transcription factor crz-1 were increased, but expression levels were reduced in the presence of the calcineurin inhibitor FK506 under the heat shock stress in the N. crassa wild type. Therefore, the calcineurin-crz-1 signaling pathway transcriptionally regulates hsp60 and hsp80 under the heat shock stress condition in N. crassa. In addition, the transcript levels of trm-9 and nca-2, a Ca2+ sensor and a Ca2+ ATPase, respectively, were increased under the heat shock stress condition. Moreover, the expression of the hsp80, but not the hsp60, was reduced in the Δtrm-9, Δnca-2, and the Δtrm-9 Δnca-2 double mutants. These results suggested that hsp80, trm-9, and nca-2 play a role in coping the heat shock stress in N. crassa. We found that CRZ-1 binds to 5ʹ-CCTTCACA-3ʹ and 5ʹ-AGCGGAGC-3ʹ 8 bp nucleotide sequences, located about 1075 bp and 679 bp upstream of the ATG start codon, respectively, of hsp80. We also found that CRZ-1 binds to an 8 bp nucleotide sequence 5ʹ-ACCGCGCC-3ʹ, located 234 bp upstream of the ATG start codon of nca-2 under Ca2+ stress condition. Thus, cnb-1, hsp60, hsp80, and crz-1 are involved in the heat shock stress response in N. crassa. Moreover, CRZ-1 upregulates the expressions of hsp80 and nca-2 under the heat shock stress and Ca2+ stress conditions, respectively, in N. crassa.

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