scholarly journals Analysis of field-grown Panax ginseng rhizosphere microbiome provides clues for preventing red skin root syndrome

2021 ◽  
Author(s):  
Xingbo Bian ◽  
Ling Dong ◽  
Yan Zhao ◽  
He Yang ◽  
Yonghua Xu ◽  
...  
Keyword(s):  
Biological Control ◽  
Ecological Niche ◽  
Interaction Network ◽  
Pathogenic Fungi ◽  
Niche Overlap ◽  
Amplicon Sequencing ◽  
Soil Improvement ◽  
Niche Separation ◽  
Key Factors ◽  
Rhizosphere Microbiome

Abstract Background Ginseng red skin root syndrome (GRS) is one of the most common ginseng diseases. It leads to a severe decline in ginseng quality and seriously affects the ginseng industry in China. However, as a root disease, the characteristics of GRS rhizosphere microbiome are still unclear. Methods The amplicon sequencing technology, combined with bioinformatics analysis, was used to explore the relationship between soil ecological environment and GRS. Results There were significant differences in the diversity and richness of soil microorganisms between the rhizosphere with different degrees of disease, especially between healthy ginseng (HG) and heavily diseased groups. We also found that bacterial communities underwent multiple changes between complex stability and simple instability in different ginseng rhizospheres through the established interaction networks. The GRS group also had more competition with each other and ecological niche separation than the HG group. The fungal community's stability decreased significantly in the early stages of the disease, followed by the formation of a stable and complex fungal community. The GRS groups significantly increased interspecies cooperation and ecological niche overlap in the fungal network than the HG group. Microbes closely related to potential pathogenic fungi were also identified according to the interaction network, which provided clues for looking for biological control agents. Finally, the Distance-based redundancy analysis (dbRDA) results indicated that total P (TP), available K (AK), available P (AP), catalase (CAT), invertase (INV) are the key factors that influence the microbial communities. Conclusions This study collectively analyzed the changing characteristics in ginseng rhizosphere and provided the basis for soil improvement and biological control of field-grown ginseng.

scholarly journals Rhizosphere analysis of field-grown Panax ginseng with different degrees of red skin provides the basis for preventing red skin syndrome

2022 ◽  
Vol 22 (1) ◽  
Author(s):  
Ling Dong ◽  
Xingbo Bian ◽  
Yan Zhao ◽  
He Yang ◽  
Yonghua Xu ◽  
...  
Keyword(s):  
Biological Control ◽  
Microbial Communities ◽  
Panax Ginseng ◽  
Interaction Network ◽  
Pathogenic Fungi ◽  
Soil Improvement ◽  
Rrna Genes ◽  
Available Phosphorus ◽  
Composition Analysis ◽  
Key Factors

Abstract Background Ginseng red skin root syndrome (GRS) is one of the most common ginseng (Panax ginseng Meyer) diseases. It leads to a severe decline in P. ginseng quality and seriously affects the P. ginseng industry in China. However, as a root disease, the characteristics of the GRS rhizosphere microbiome are still unclear. Methods The amplicon bacterial 16 S rRNA genes and fungal ITS (Internal Transcribed Spacer) regions Illumina sequencing technology, combined with microbial diversity and composition analysis based on R software, was used to explore the relationship between soil ecological environment and GRS. Results There were significant differences in the diversity and richness of soil microorganisms between the rhizosphere with different degrees of disease, especially between healthy P. ginseng (HG) and heavily diseased groups. The variation characteristics of microbial abundance in different taxa levels were analyzed. The interaction network of rhizosphere microorganisms of P. ginseng under GRS background was established. We also found that different P. ginseng rhizosphere microbial communities have multiple changes in stability and complexity through the established interaction network. Microbes closely related to potential pathogenic fungi were also identified according to the interaction network, which provided clues for looking for biological control agents. Finally, the Distance-based redundancy analysis (dbRDA) results indicated that total phosphorus (TP), available potassium (AK), available phosphorus (AP), catalase (CAT), invertase (INV) are the key factors that influence the microbial communities. Moreover, the content of these key factors in the rhizosphere was negatively correlated with disease degrees. Conclusions In this study, we comprehensively analyzed the rhizosphere characteristics of P. ginseng with different levels of disease, and explored the interaction relationship among microorganisms. These results provide a basis for soil improvement and biological control of field-grown in the future.

EFEKTIFITAS RHIZOCTONIA MIKORIZA DALAM MENGINDUKSI KETAHANAN ANGGREK PHALAENOPSIS AMABILIS TERHADAP FUSARIUM SP.

2014 ◽  
Vol 14 (2) ◽  
Author(s):  
R. Soelistijono
Keyword(s):  
Biological Control ◽  
Disease Resistance ◽  
Fusarium Solani ◽  
Pathogenic Fungi ◽  
Resistance Induction ◽  
Fusarium Sp

This study examines the effectiveness of mycorrhizal Rhizoctonia resistance induction in Phalaenopsis amabilis against Fusarium sp. Fusarium solani is known as pathogens that attack many orchids P. amabilis (Chung et al., 2011) compared to other pathogenic fungi. Attack of Fusarium sp. will cause rot and yellow colored leaves. Until now there has been known as a biological control orchid against Fusarium sp. In this study tested the endurance locations in Sleman and Surakarta to see the effectiveness of a good orchid growth induced by Rhizoctonia mycorrhizal or not to attack by Fusarium sp. The results of the study showed that mycorrhizal Rhizoctonia able to inhibit the attack of Fusarium sp. It is shown by the value of the index of disease resistance  (DSI) in P. amabilis orchid mycorrhizal Rhizoctonia induced lower than that not induced. Mycorrhizal Rhizoctonia induction results in Sleman provide a more real than mycorrhizal Rhizoctonia induction in Surakarta.

scholarly journals Structural, Evolutionary, and Functional Analysis of the Protein O-Mannosyltransferase Family in Pathogenic Fungi

2021 ◽  
Vol 7 (5) ◽  
pp. 328
Author(s):  
María Dolores Pejenaute-Ochoa ◽  
Carlos Santana-Molina ◽  
Damien P. Devos ◽  
José Ignacio Ibeas ◽  
Alfonso Fernández-Álvarez
Keyword(s):  
Functional Analysis ◽  
Secretory Pathway ◽  
Pathogenic Fungi ◽  
Fungal Pathogenesis ◽  
Post Translational Modification ◽  
Key Factors ◽  
Wide Range ◽  
Single Deletion ◽  
Asymmetrical Impact ◽  
Substrate Proteins

Protein O-mannosyltransferases (Pmts) comprise a group of proteins that add mannoses to substrate proteins at the endoplasmic reticulum. This post-translational modification is important for the faithful transfer of nascent glycoproteins throughout the secretory pathway. Most fungi genomes encode three O-mannosyltransferases, usually named Pmt1, Pmt2, and Pmt4. In pathogenic fungi, Pmts, especially Pmt4, are key factors for virulence. Although the importance of Pmts for fungal pathogenesis is well established in a wide range of pathogens, questions remain regarding certain features of Pmts. For example, why does the single deletion of each pmt gene have an asymmetrical impact on host colonization? Here, we analyse the origin of Pmts in fungi and review the most important phenotypes associated with Pmt mutants in pathogenic fungi. Hence, we highlight the enormous relevance of these glycotransferases for fungal pathogenic development.

Ecological niche separation of two sympatric insectivorous lizard species in the Namib Desert

2016 ◽  
Vol 124 ◽  
pp. 225-232 ◽  
Author(s):  
Ian W. Murray ◽  
Andrea Fuller ◽  
Hilary M. Lease ◽  
Duncan Mitchell ◽  
Robyn S. Hetem
Keyword(s):  
Ecological Niche ◽  
Niche Separation ◽  
Namib Desert ◽  
Lizard Species

scholarly journals Characterizing CMN1308, a Novel Strain of Bacillus amyloliquefaciens, for Potential Biological Control Application

2016 ◽  
Vol 44 (1) ◽  
pp. 60-66
Author(s):  
Xuehua ZHANG ◽  
Linling LI ◽  
Shuiyuan CHENG ◽  
Hua CHENG
Keyword(s):  
Biological Control ◽  
Antimicrobial Activity ◽  
Bacillus Amyloliquefaciens ◽  
Spatial Competition ◽  
Pathogenic Fungi ◽  
Cryphonectria Parasitica ◽  
Fruit Rot ◽  
Penicillium Expansum ◽  
Antibiotic Compounds ◽  
Plant Disease Management

Fungal diseases of plants continue to contribute to heavy crop losses in spite of the best control efforts of plant pathologists. Breeding for disease-resistant varieties and the application of synthetic chemical fungicides are the most widely accepted approaches in plant disease management. CMN1308 strain of Bacillus amyloliquefaciens was isolated from healthy Chinese chestnut fruit, which has antibiosis and induced resistance to the prevention mechanism of pathogenic bacterium after picking. In order to evaluate the antibiosis mechanism, CMN1308 was fostered with the method of confront culture. The antimicrobial components were also isolated from the culture of CMN1308, and their stability and antimicrobial activity was tested under different treatments such as temperature, pH and UV. The results showed that CMN1308 displays advantages in regard to spatial competition against the major pathogens of chestnut, Rhizopus stolonifer, Fusarium solani, Stachybotrys chartarum, Cryphonectria parasitica, Lasiodiplodia theobromae, Penicillium expansum and Aspergillus niger. Among this, CMN1308 had the best antimicrobial activity against P. expansum, with the inhibition zone diameter of 27.1 mm. The antimicrobial material isolated from CMN1308 culture showed a strong inhibition to the growth of P. expansum hyphal and also had a good stability to high temperature, alkali media and UV, but was sensitive to acidic conditions. Furthermore, CMN1308 increased the peroxidase, polyphenol oxidase activity and reduced the MDA content in chestnuts after infecting by pathogenic fungi. Thus, producing antibiotic compounds and inducible resistance are the main factors that may explain the antibacterial mechanism of CMN1308 on chestnut pathogenic. The results of this study might help to optimize the practical use of CMN1308 in the biological control of chestnut rot or other fruit rot infected by pathogenic fungi.

The potential use of Debaryomyces hansenii for the biological control of pathogenic fungi in food

2018 ◽  
Vol 121 ◽  
pp. 216-222 ◽  
Author(s):  
Noé Medina-Córdova ◽  
Sergio Rosales-Mendoza ◽  
Luis Guillermo Hernández-Montiel ◽  
Carlos Angulo
Keyword(s):  
Biological Control ◽  
Debaryomyces Hansenii ◽  
Pathogenic Fungi ◽  
Potential Use

scholarly journals BIOLOGICAL CONTROL IN LEAF-CUTTING ANTS, Atta sexdens (HYMENOPTERA: FORMICIDAE), USING PATHOGENIC FUNGI

2021 ◽  
Vol 45 ◽  
Author(s):  
Tarcísio Marcos Macedo Mota Filho ◽  
Luis Eduardo Pontes Stefanelli ◽  
Roberto da Silva Camargo ◽  
Carlos Alberto Oliveira de Matos ◽  
Luiz Carlos Forti
Keyword(s):  
Biological Control ◽  
Chemical Control ◽  
Pathogenic Fungi ◽  
Behavioral Changes ◽  
The Other ◽  
Fungus Garden ◽  
Atta Sexdens ◽  
Main Method ◽  
New Methods ◽  
Leaf Cutting

ABSTRACT Chemical control using toxic baits containing the active ingredient sulfluramid at 0.3% (w/w) is the main method for controlling leaf-cutting ants of the genera Atta and Acromyrmex. However, since 2009, when sulfluramid was included in Annex B of the Stockholm Convention on Persistent Organic Pollutants, there has been an intense search for new methods that are efficient in controlling these insects. Among said new methods, biological control using pathogenic fungi has shown promising results in laboratory conditions. The objective of this study, given the context presented, was to assess the potential of the fungi Beauveria bassiana and Trichoderma harzianum in controlling Atta sexdens. Colonies of A. sexdens were exposed to the fungi by means of formulated baits provided in a foraging chamber, or of suspensions sprayed on the fungus garden, and had their behavioral changes recorded for 21 days. For both formulations, concentrations of 10 and 20% (w/w) of the fungi being studied were used. The results allowed concluding that baits containing 10 and 20% (w/w) of the fungi B. bassiana and T. harzianum were not efficient in controlling colonies of A sexdens. On the other hand, spraying suspensions of 20% (w/w) of B. bassiana and 10% and 20% (w/w) of T. harzianum was efficient and resulted in 100% mortality of the colonies 11, 9 and 7 days after application, respectively. These findings indicate that the fungi B. bassiana and T. harzianum are promising as agents for the control of A. sexdens colonies, when sprayed on the fungus garden, although there are still some challenges as to their use related to the development of technologies for the application of the pathogen.

scholarly journals Relative and quantitative rhizosphere microbiome profiling result in distinct abundance patterns

2021 ◽  
Author(s):  
Hamed Azarbad ◽  
Julien Tremblay ◽  
Luke D. Bainard ◽  
Etienne Yergeau
Keyword(s):  
Water Stress ◽  
Relative Abundance ◽  
Its Region ◽  
Cost Effective ◽  
Amplicon Sequencing ◽  
Rrna Gene ◽  
Real Time Quantitative Pcr ◽  
Rhizosphere Microbiome ◽  
History Of ◽  
Almost All

AbstractNext-generation sequencing is recognized as one of the most popular and cost-effective way of characterizing microbiome in multiple samples. However, most of the currently available amplicon sequencing approaches are inherently limited, as they are often presented based on the relative abundance of microbial taxa, which may not fully represent actual microbiome profiles. Here, we combined amplicon sequencing (16S rRNA gene for bacteria and ITS region for fungi) with real-time quantitative PCR (qPCR) to characterize the rhizosphere microbiome of wheat. We show that the increase in relative abundance of major microbial phyla does not necessarily result in an increase in abundance. One striking observation when comparing relative and quantitative abundances was a substantial increase in the abundance of almost all phyla associated with the rhizosphere of plants grown in soil with no history of water stress as compared with the rhizosphere of plants growing in soil with a history of water stress, which was in contradiction with the trends observed in the relative abundance data. Our results suggest that the estimated absolute abundance approach gives a different perspective than the relative abundance approach, providing complementary information that helps to better understand the rhizosphere microbiome.

scholarly journals Temporal Variation in the Niche Partitioning of Lake Michigan Salmonines as it Relates to Alewife Abundance and Size Structure.

2021 ◽  
Author(s):  
Benjamin A. Turschak ◽  
Charles R. Bronte ◽  
Sergiusz J. Czesny ◽  
Brandon S. Gerig ◽  
Austin Happel ◽  
...  
Keyword(s):  
Ecological Niche ◽  
Lake Michigan ◽  
Nitrogen Isotopes ◽  
Size Structure ◽  
Prey Availability ◽  
Habitat Preferences ◽  
Niche Partitioning ◽  
Niche Overlap ◽  
Isotopic Niche ◽  
Resource Gradient

Stable isotope analyses offer a useful means for quantifying ecological niche dimensions, though few studies have examined isotopic response of an ecological community with respect to resource gradients such as fluctuations in prey availability. Stable carbon and nitrogen isotopes were measured for Lake Michigan salmonines and their prey collected from 2014 to 2016. Bayesian ellipse and mixing model analyses were used to quantify isotopic niche characteristics and diets, respectively, among species and years. During the three-year study period, abundance and size structure of preferred alewife prey changed substantially and offered an opportunity to explore predator isotopic niche response and diet shifts along a prey resource gradient. Results suggested increased reliance on alewives, especially small alewives, over the study period and were consistent with greater availability of this prey. However, differential use of alewife size classes and alternative prey sources by salmonine predators was apparent, which suggested possible resource partitioning. Characterization of ecological niche overlap using stable isotopes likely requires consideration of shared resource availability as well as specific prey and habitat preferences.

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