scholarly journals Development of a Deep Learning System To Reduce The Time Needed for COVID-19 RT-PCR: Can We Use Deep Learning To Get RT-PCR Test Results of COVID-19 Faster?

2021 ◽  
Author(s):  
YOONJE LEE ◽  
Yu-Seop KIM ◽  
Da-in Lee ◽  
Seri Jeong ◽  
Gu-Hyun Kang ◽  
...  
Keyword(s):  
Deep Learning ◽  
Sensitivity And Specificity ◽  
Diagnostic Performance ◽  
Operating Characteristic ◽  
Short Term Memory ◽  
Learning System ◽  
Test Results ◽  
Rt Pcr ◽  
Pcr Diagnosis ◽  
Long Short Term Memory

Abstract Reducing the time to diagnose COVID-19 helps to manage insufficient isolation-bed resources and adequately accommodate critically ill patients in clinical fields. There is currently no alternative method to RT-PCR, which requires 40 cycles to diagnose COVID-19. We proposed a deep learning (DL) model to improve the speed of COVID-19 RT-PCR diagnosis. We developed and tested a DL model using the long-short term memory method with a dataset of fluorescence values measured in each cycle of 5,810 RT-PCR tests. Among the DL models developed here, the diagnostic performance of the 21st model showed an area under the receiver operating characteristic (AUROC), sensitivity, and specificity of 84.55%, 93.33%, and 75.72%, respectively. The diagnostic performance of the 24th model showed an AUROC sensitivity, and specificity of 91.27%, 90.00%, and 92.54%, respectively.

scholarly journals Algoritma LSTM-CNN untuk Binary Klasifikasi dengan Word2vec pada Media Online

2021 ◽  
Vol 8 (1) ◽  
pp. 64
Author(s):  
Dedi Tri Hermanto ◽  
Arief Setyanto ◽  
Emha Taufiq Luthfi
Keyword(s):  
Deep Learning ◽  
Sentiment Analysis ◽  
Short Term Memory ◽  
Direct Impact ◽  
Test Results ◽  
Short Term ◽  
Term Memory ◽  
Traditional Markets ◽  
Interesting Topic ◽  
Long Short Term Memory

Media online banyak menghasilkan berbagai macam berita, baik ekonomi, politik, kesehatan, olahraga atau ilmu pengetahuan. Di antara itu semua, ekonomi adalah salah satu topik menarik untuk dibahas. Ekonomi memiliki dampak langsung kepada warga negara, perusahaan, bahkan pasar tradisional tergantung pada kondisi ekonomi di suatu negara. Sentimen yang terkandung dalam berita dapat mempengaruhi pandangan masyarakat terhadap suatu hal atau kebijakan pemerintah. Topik ekonomi adalah bahasan yang menarik untuk dilakukan penelitian karena memiliki dampak langsung kepada masyarakat Indonesia. Namun, masih sedikit penelitian yang menerapkan metode deep learning yaitu Long Short-Term Memory dan CNN untuk analisis sentimen pada artikel finance di Indonesia. Penelitian ini bertujuan untuk melakukan pengklasifikasian judul berita berbahasa Indonesia berdasarkan sentimen positif, negatif dengan menggunakan metode LSTM, LSTM-CNN, CNN-LSTM. Dataset yang digunakan adalah data judul artikel berbahasa Indonesia yang diambil dari situs Detik Finance. Berdasarkan hasil pengujian memperlihatkan bahwa metode LSTM, LSTM-CNN, CNN-LSTM memiliki hasil akurasi sebesar, 62%, 65% dan 74%.Kata Kunci — LSTM, sentiment analysis, CNNOnline media produce a lot of various kinds of news, be it economics, politics, health, sports or science. Among them, economics is one interesting topic to discuss. The economy has a direct impact on citizens, companies, and even traditional markets depending on the economic conditions in a country. The sentiment contained in the news can influence people's views on a matter or government policy. The topic of economics is an interesting topic for research because it has a direct impact on Indonesian society. However, there are still few studies that apply deep learning methods, namely Long Short-Term Memory and CNN for sentiment analysis on finance articles in Indonesia. This study aims to classify Indonesian news headlines based on positive and negative sentiments using the LSTM, LSTM-CNN, CNN-LSTM methods. The dataset used is data on Indonesian language article titles taken from the Detik Finance website. Based on the test results, it shows that the LSTM, LSTM-CNN, CNN-LSTM methods have an accuracy of, 62%, 65% and 74%.Keywords — LSTM, sentiment analysis, CNN

scholarly journals Development and clinical deployment of a smartphone-based visual field deep learning system for glaucoma detection

2020 ◽  
Vol 3 (1) ◽  
Author(s):  
Fei Li ◽  
Diping Song ◽  
Han Chen ◽  
Jian Xiong ◽  
Xingyi Li ◽  
...  
Keyword(s):  
Deep Learning ◽  
Phase I ◽  
Sensitivity And Specificity ◽  
Phase Ii ◽  
Diagnostic Performance ◽  
High Efficiency ◽  
Learning System ◽  
Diagnostic Tools ◽  
Data Points ◽  
Test Sets

Abstract By 2040, ~100 million people will have glaucoma. To date, there are a lack of high-efficiency glaucoma diagnostic tools based on visual fields (VFs). Herein, we develop and evaluate the performance of ‘iGlaucoma’, a smartphone application-based deep learning system (DLS) in detecting glaucomatous VF changes. A total of 1,614,808 data points of 10,784 VFs (5542 patients) from seven centers in China were included in this study, divided over two phases. In Phase I, 1,581,060 data points from 10,135 VFs of 5105 patients were included to train (8424 VFs), validate (598 VFs) and test (3 independent test sets—200, 406, 507 samples) the diagnostic performance of the DLS. In Phase II, using the same DLS, iGlaucoma cloud-based application further tested on 33,748 data points from 649 VFs of 437 patients from three glaucoma clinics. With reference to three experienced expert glaucomatologists, the diagnostic performance (area under curve [AUC], sensitivity and specificity) of the DLS and six ophthalmologists were evaluated in detecting glaucoma. In Phase I, the DLS outperformed all six ophthalmologists in the three test sets (AUC of 0.834–0.877, with a sensitivity of 0.831–0.922 and a specificity of 0.676–0.709). In Phase II, iGlaucoma had 0.99 accuracy in recognizing different patterns in pattern deviation probability plots region, with corresponding AUC, sensitivity and specificity of 0.966 (0.953–0.979), 0.954 (0.930–0.977), and 0.873 (0.838–0.908), respectively. The ‘iGlaucoma’ is a clinically effective glaucoma diagnostic tool to detect glaucoma from humphrey VFs, although the target population will need to be carefully identified with glaucoma expertise input.

scholarly journals Development and Verification of a Deep Learning Algorithm to Evaluate Small-Bowel Preparation Quality

Diagnostics ◽  
2021 ◽  
Vol 11 (6) ◽  
pp. 1127
Author(s):  
Ji Hyung Nam ◽  
Dong Jun Oh ◽  
Sumin Lee ◽  
Hyun Joo Song ◽  
Yun Jeong Lim
Keyword(s):  
Deep Learning ◽  
Small Bowel ◽  
Scoring System ◽  
Operating Characteristic ◽  
Clinical Evidence ◽  
Learning Algorithm ◽  
Characteristic Curve ◽  
External Validation ◽  
Test Results ◽  
Deep Learning Algorithm

Capsule endoscopy (CE) quality control requires an objective scoring system to evaluate the preparation of the small bowel (SB). We propose a deep learning algorithm to calculate SB cleansing scores and verify the algorithm’s performance. A 5-point scoring system based on clarity of mucosal visualization was used to develop the deep learning algorithm (400,000 frames; 280,000 for training and 120,000 for testing). External validation was performed using additional CE cases (n = 50), and average cleansing scores (1.0 to 5.0) calculated using the algorithm were compared to clinical grades (A to C) assigned by clinicians. Test results obtained using 120,000 frames exhibited 93% accuracy. The separate CE case exhibited substantial agreement between the deep learning algorithm scores and clinicians’ assessments (Cohen’s kappa: 0.672). In the external validation, the cleansing score decreased with worsening clinical grade (scores of 3.9, 3.2, and 2.5 for grades A, B, and C, respectively, p < 0.001). Receiver operating characteristic curve analysis revealed that a cleansing score cut-off of 2.95 indicated clinically adequate preparation. This algorithm provides an objective and automated cleansing score for evaluating SB preparation for CE. The results of this study will serve as clinical evidence supporting the practical use of deep learning algorithms for evaluating SB preparation quality.

scholarly journals Application of Rough and Fuzzy Set Theory for Prediction of Stochastic Wind Speed Data Using Long Short-Term Memory

Atmosphere ◽  
2021 ◽  
Vol 12 (7) ◽  
pp. 924
Author(s):  
Moslem Imani ◽  
Hoda Fakour ◽  
Wen-Hau Lan ◽  
Huan-Chin Kao ◽  
Chi Ming Lee ◽  
...  
Keyword(s):  
Deep Learning ◽  
Wind Speed ◽  
Set Theory ◽  
Rough Set ◽  
Fuzzy Set Theory ◽  
Short Term Memory ◽  
Learning Model ◽  
Short Term ◽  
Long Short Term Memory ◽  
Deep Learning Model

Despite the great significance of precisely forecasting the wind speed for development of the new and clean energy technology and stable grid operators, the stochasticity of wind speed makes the prediction a complex and challenging task. For improving the security and economic performance of power grids, accurate short-term wind power forecasting is crucial. In this paper, a deep learning model (Long Short-term Memory (LSTM)) has been proposed for wind speed prediction. Knowing that wind speed time series is nonlinear stochastic, the mutual information (MI) approach was used to find the best subset from the data by maximizing the joint MI between subset and target output. To enhance the accuracy and reduce input characteristics and data uncertainties, rough set and interval type-2 fuzzy set theory are combined in the proposed deep learning model. Wind speed data from an international airport station in the southern coast of Iran Bandar-Abbas City was used as the original input dataset for the optimized deep learning model. Based on the statistical results, the rough set LSTM (RST-LSTM) model showed better prediction accuracy than fuzzy and original LSTM, as well as traditional neural networks, with the lowest error for training and testing datasets in different time horizons. The suggested model can support the optimization of the control approach and the smooth procedure of power system. The results confirm the superior capabilities of deep learning techniques for wind speed forecasting, which could also inspire new applications in meteorology assessment.

scholarly journals Schätzung der Verdunstung mithilfe von Machine- und Deep Learning-Methoden

2021 ◽  
Author(s):  
Claire Brenner ◽  
Jonathan Frame ◽  
Grey Nearing ◽  
Karsten Schulz
Keyword(s):  
Deep Learning ◽  
Short Term Memory ◽  
Sich Eine ◽  
Short Term ◽  
Term Memory ◽  
Neuronales Netzwerk ◽  
Long Short Term Memory

ZusammenfassungDie Verdunstung ist ein entscheidender Prozess im globalen Wasser‑, Energie- sowie Kohlenstoffkreislauf. Daten zur räumlich-zeitlichen Dynamik der Verdunstung sind daher von großer Bedeutung für Klimamodellierungen, zur Abschätzung der Auswirkungen der Klimakrise sowie nicht zuletzt für die Landwirtschaft.In dieser Arbeit wenden wir zwei Machine- und Deep Learning-Methoden für die Vorhersage der Verdunstung mit täglicher und halbstündlicher Auflösung für Standorte des FLUXNET-Datensatzes an. Das Long Short-Term Memory Netzwerk ist ein rekurrentes neuronales Netzwerk, welchen explizit Speichereffekte berücksichtigt und Zeitreihen der Eingangsgrößen analysiert (entsprechend physikalisch-basierten Wasserbilanzmodellen). Dem gegenüber gestellt werden Modellierungen mit XGBoost, einer Entscheidungsbaum-Methode, die in diesem Fall nur Informationen für den zu bestimmenden Zeitschritt erhält (entsprechend physikalisch-basierten Energiebilanzmodellen). Durch diesen Vergleich der beiden Modellansätze soll untersucht werden, inwieweit sich durch die Berücksichtigung von Speichereffekten Vorteile für die Modellierung ergeben.Die Analysen zeigen, dass beide Modellansätze gute Ergebnisse erzielen und im Vergleich zu einem ausgewerteten Referenzdatensatz eine höhere Modellgüte aufweisen. Vergleicht man beide Modelle, weist das LSTM im Mittel über alle 153 untersuchten Standorte eine bessere Übereinstimmung mit den Beobachtungen auf. Allerdings zeigt sich eine Abhängigkeit der Güte der Verdunstungsvorhersage von der Vegetationsklasse des Standorts; vor allem wärmere, trockene Standorte mit kurzer Vegetation werden durch das LSTM besser repräsentiert, wohingegen beispielsweise in Feuchtgebieten XGBoost eine bessere Übereinstimmung mit den Beobachtung liefert. Die Relevanz von Speichereffekten scheint daher zwischen Ökosystemen und Standorten zu variieren.Die präsentierten Ergebnisse unterstreichen das Potenzial von Methoden der künstlichen Intelligenz für die Beschreibung der Verdunstung.

scholarly journals Deep Learning Methods for Classification of Certain Abnormalities in Echocardiography

Electronics ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 495
Author(s):  
Imayanmosha Wahlang ◽  
Arnab Kumar Maji ◽  
Goutam Saha ◽  
Prasun Chakrabarti ◽  
Michal Jasinski ◽  
...  
Keyword(s):  
Deep Learning ◽  
Short Term Memory ◽  
Support Vector ◽  
Variational Autoencoder ◽  
Different Types ◽  
Static Images ◽  
Long Short Term Memory ◽  
2D And 3D ◽  
Better Than

This article experiments with deep learning methodologies in echocardiogram (echo), a promising and vigorously researched technique in the preponderance field. This paper involves two different kinds of classification in the echo. Firstly, classification into normal (absence of abnormalities) or abnormal (presence of abnormalities) has been done, using 2D echo images, 3D Doppler images, and videographic images. Secondly, based on different types of regurgitation, namely, Mitral Regurgitation (MR), Aortic Regurgitation (AR), Tricuspid Regurgitation (TR), and a combination of the three types of regurgitation are classified using videographic echo images. Two deep-learning methodologies are used for these purposes, a Recurrent Neural Network (RNN) based methodology (Long Short Term Memory (LSTM)) and an Autoencoder based methodology (Variational AutoEncoder (VAE)). The use of videographic images distinguished this work from the existing work using SVM (Support Vector Machine) and also application of deep-learning methodologies is the first of many in this particular field. It was found that deep-learning methodologies perform better than SVM methodology in normal or abnormal classification. Overall, VAE performs better in 2D and 3D Doppler images (static images) while LSTM performs better in the case of videographic images.

scholarly journals Multiple Pedestrians and Vehicles Tracking in Aerial Imagery Using a Convolutional Neural Network

2021 ◽  
Vol 13 (10) ◽  
pp. 1953
Author(s):  
Seyed Majid Azimi ◽  
Maximilian Kraus ◽  
Reza Bahmanyar ◽  
Peter Reinartz
Keyword(s):  
Neural Network ◽  
Deep Learning ◽  
Convolutional Neural Network ◽  
Object Tracking ◽  
Short Term Memory ◽  
Aerial Imagery ◽  
Future Research ◽  
Short Term ◽  
Term Memory ◽  
Long Short Term Memory

In this paper, we address various challenges in multi-pedestrian and vehicle tracking in high-resolution aerial imagery by intensive evaluation of a number of traditional and Deep Learning based Single- and Multi-Object Tracking methods. We also describe our proposed Deep Learning based Multi-Object Tracking method AerialMPTNet that fuses appearance, temporal, and graphical information using a Siamese Neural Network, a Long Short-Term Memory, and a Graph Convolutional Neural Network module for more accurate and stable tracking. Moreover, we investigate the influence of the Squeeze-and-Excitation layers and Online Hard Example Mining on the performance of AerialMPTNet. To the best of our knowledge, we are the first to use these two for regression-based Multi-Object Tracking. Additionally, we studied and compared the L1 and Huber loss functions. In our experiments, we extensively evaluate AerialMPTNet on three aerial Multi-Object Tracking datasets, namely AerialMPT and KIT AIS pedestrian and vehicle datasets. Qualitative and quantitative results show that AerialMPTNet outperforms all previous methods for the pedestrian datasets and achieves competitive results for the vehicle dataset. In addition, Long Short-Term Memory and Graph Convolutional Neural Network modules enhance the tracking performance. Moreover, using Squeeze-and-Excitation and Online Hard Example Mining significantly helps for some cases while degrades the results for other cases. In addition, according to the results, L1 yields better results with respect to Huber loss for most of the scenarios. The presented results provide a deep insight into challenges and opportunities of the aerial Multi-Object Tracking domain, paving the way for future research.

scholarly journals Systematic Design and Evaluation of a Citation Function Classification Scheme in Indonesian Journals

Publications ◽  
2021 ◽  
Vol 9 (3) ◽  
pp. 27
Author(s):  
Yaniasih Yaniasih ◽  
Indra Budi
Keyword(s):  
Deep Learning ◽  
Short Term Memory ◽  
Scientific Evidence ◽  
Ease Of Use ◽  
Future Research ◽  
Extensive Literature ◽  
Journal Articles ◽  
Citation Function ◽  
Compilation Process ◽  
Long Short Term Memory

Classifying citations according to function has many benefits when it comes to information retrieval tasks, scholarly communication studies, and ranking metric developments. Many citation function classification schemes have been proposed, but most of them have not been systematically designed for an extensive literature-based compilation process. Many schemes were also not evaluated properly before being used for classification experiments utilizing large datasets. This paper aimed to build and evaluate new citation function categories based upon sufficient scientific evidence. A total of 2153 citation sentences were collected from Indonesian journal articles for our dataset. To identify the new categories, a literature survey was conducted, analyses and groupings of category meanings were carried out, and then categories were selected based on the dataset’s characteristics and the purpose of the classification. The evaluation used five criteria: coherence, ease, utility, balance, and coverage. Fleiss’ kappa and automatic classification metrics using machine learning and deep learning algorithms were used to assess the criteria. These methods resulted in five citation function categories. The scheme’s coherence and ease of use were quite good, as indicated by an inter-annotator agreement value of 0.659 and a Long Short-Term Memory (LSTM) F1-score of 0.93. According to the balance and coverage criteria, the scheme still needs to be improved. This research data was limited to journals in food science published in Indonesia. Future research will involve classifying the citation function using a massive dataset collected from various scientific fields and published from some representative countries, as well as applying improved annotation schemes and deep learning methods.

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