scholarly journals In situ new variations in Puccinia triticina causing leaf rust on wheat

Author(s):  
Subodh Kumar ◽  
Subhash Chander Bhardwaj ◽  
Om Prakash Gangwar ◽  
Pramod Prasad ◽  
Charu Lata ◽  
...  

Abstract During the periodic purity checks of pathotypes 107-1(45R35=JCGPL) and 20(5R27=SGQPL) of Puccinia triticina in national repository at Shimla, India, mixtures of infection types were observed on the differential Lr3 and Lr15 , respectively. Single pustule isolations and further pure cultures in both the cases yielded new pathotypes designated as 57(45R39= KGTPL) and 20-2(57R27= SHKPL). Pathotype 57 was one step gain in virulence on Lr3 in 107-1 whereas 20-2 on Lr15 in mother culture of pathotype 20. The difference of virulence on one gene to each mother culture and their non occurrence in the field samples is indicative of mutation for virulence in situ . To ascertain the novelty of new pathotypes, detailed study on differentials, avirulence/virulence structure, DNA polymorphism using SSR markers, and other related information is presented in this publication. The new cultures are being maintained as PrtI 57 and PrtI 20-2 in the repository.

Plant Disease ◽  
2005 ◽  
Vol 89 (11) ◽  
pp. 1136-1142 ◽  
Author(s):  
J. A. Anderson ◽  
J. A. Kolmer

In greenhouse and field trials, transgenically modified wheat (Triticum aestivum) genotypes with tolerance to glyphosate had extremely low infection types to leaf rust caused by Puccinia triticina when treated with a labeled rate of the herbicide glyphosate prior to inoculation with leaf rust. A surfactant solution and a nonglyphosate herbicide had no effect on leaf rust development on the glyphosate tolerant wheat. Glyphosate had a systemic effect in reducing leaf rust development. The leaf rust control by glyphosate decreased with reduced application rates and longer periods of time between glyphosate application and leaf rust infections. The field and greenhouse tests indicated that control of leaf rust in wheat conditioned by glyphosate is transitory and is effective for at least 21, but not more than 35, days after application. Application of glyphosate also reduced infection types on wheat caused by the stem rust fungus, Puccinia graminis f. sp. tritici. Given these results and evidence from the literature that glyphosate can have adverse effects on other pathogens, including other rust fungi, additional investigation of the fungicidal properties of glyphosate are warranted, with particular attention to the timing of glyphosate application relative to fungal infection. The effects of glyphosate on the soybean rust fungus, Phakopsora pachyrhizi, an emerging pathogen in North America, merit immediate investigation.


Plant Disease ◽  
2015 ◽  
Vol 99 (1) ◽  
pp. 156-156 ◽  
Author(s):  
J. A. Kolmer

Phenotypes of the wheat leaf rust pathogen Puccinia triticina with high virulence to tetraploid durum wheat (Triticum turgidum) are found regularly in Mexico (5), the Mediterranean region (1), the Middle East (3), and rarely in the Imperial Valley of California and the adjacent area in Arizona. Previous to 2013, these phenotypes had not been found in the Great Plains region of the United States where hexaploid, T. aestivum types of hard red winter wheat, hard red spring wheat, and durum wheat are grown. In May 2013, collections of P. triticina, the wheat leaf rust fungus identified by color, size, and shape of uredinia, were obtained from leaves of the hard red winter wheat cultivar Overley in research plots at Hutchinson, KS. A single uredinial isolate was obtained that was used in virulence testing and molecular genotyping. Urediniospores from the initial field collection were inoculated onto seedlings of the susceptible cultivar Little Club. Subsequently, single uredinia were isolated and re-increased on Little Club. The single uredinial isolate was initially inoculated to 7-day-old seedlings of 20 lines of Thatcher wheat that are near-isogenic for leaf rust resistance genes and are used in the annual virulence surveys of P. triticina in the United States (2). The phenotype of the isolate, based on virulence to the 20 differential lines, was BBBQD (2), which was identical to phenotypes of P. triticina with high virulence to durum wheat from other regions where durum wheat is commonly grown (4). This phenotype had intermediate infection type of 2+ (moderate size uredinia with chlorosis) to the line with Lr2c and high infection types of 3+ (large uredinia with no chlorosis or necrosis) to lines with genes LrB, Lr10, and Lr39/41. Overley wheat has Lr39/41. The isolate was further tested on an additional set of 27 Thatcher lines, the cultivar Gatcher with Lr27 + Lr31, and a set of 15 durum wheat cultivars that have been grown in the United States and Canada. The isolate had virulence to lines with genes Lr14b, Lr20, Lr23, Lr33, Lr44, and Lr64. Notably, the isolate had distinct low infection types to seedlings of Thatcher lines with genes Lr12, Lr13, Lr22a, Lr35, and Lr37 that are usually optimally expressed in adult plants to most P. triticina isolates. The isolate had high virulence to all of the durum wheat cultivars. The single uredinial isolate of P. triticina from Overley was also genotyped with microsatellite alleles used in previous studies with P. triticina collections from durum wheat (3). The isolate from Kansas had a highly similar genotype to other isolates of P. triticina from worldwide durum-producing regions (3). This isolate with high virulence to durum wheat most likely migrated to the southern Great Plains region from the durum-growing regions in Mexico. Cultivars such as TAM 112, Armour, Winterhawk, and Bullet with Lr39/41 and other cultivars with Overley in their pedigree are currently grown throughout the southern Great Plains. Since many of the P. triticina phenotypes with high virulence to durum wheat are virulent to Lr39/41, these cultivars may provide a pathway for the spread of these phenotypes to the major durum-producing areas of North Dakota and Saskatchewan. References: (1) H. J. Goyeau et al. Plant Pathol. 61:761, 2012. (2) J. A. Kolmer and M. A. Hughes. Plant Dis. 97:1103, 2013. (3) M. E. Ordoñez and J. A. Kolmer. Phytopathology 97:574, 2007. (4) M. E. Ordoñez and J. A. Kolmer. Phytopathology 97:344, 2007. (5) R. P. Singh et al. Plant Dis. 88:703, 2004.


Plant Disease ◽  
1999 ◽  
Vol 83 (7) ◽  
pp. 644-651 ◽  
Author(s):  
R. P. Singh ◽  
W. Q. Chen ◽  
Z. H. He

Leaf rust, caused by Puccinia triticina, is an important disease of wheat (Triticum aestivum) in China. Sixty-one spring and 102 facultative or winter growth habit wheat cultivars from China and a set of testers, carrying named Lr genes, were evaluated for resistance at the seedling growth stage with an array of Mexican Puccinia triticina races. Variation in seedling infection types of the cultivars was compared with that of the testers, and genes conferring low infection types were postulated. In total, nine named genes, Lr1 (in 13 cultivars), Lr3 (12), Lr3bg (2), Lr10 (1), Lr13 (4), Lr14a (1), Lr16 (49), Lr23 (9), and Lr26 (81), were identified. Thirty-one cultivars displayed intermediate reactions to one or more races that could not be attributed to any named gene. Twenty-eight spring cultivars were also evaluated at two field sites in Mexico using two common races. About half of them displayed good to moderate adult resistance that may be partly due to the presence of slow rusting gene Lr34 in at least seven cultivars. Diversity in adult plant responses of these wheats indicated the presence of additional slow rusting genes. Presence of 1B.1R translocation in 12 wheat cultivars, supposedly derived from intergeneric crosses involving T. durum, Haynaldia villosa, and Avena fatua, indicated that their pedigrees were incorrect.


Plant Disease ◽  
1999 ◽  
Vol 83 (2) ◽  
pp. 194-197 ◽  
Author(s):  
J. A. Kolmer

In 1997, leaf rust of wheat (Triticum aestivum), caused by Puccinia triticina, was widespread throughout the prairies of western Canada. Warm summer temperatures with frequent dew periods favored spread of the disease in wheat fields in Manitoba, Saskatchewan, and Alberta. The leaf rust epidemic of 1997 was the most widespread and severe in western Canada since 1991. The Canada Prairie Spring wheat cultivars (AC Vista, AC Foremost, AC Crystal) were susceptible to leaf rust, while the bread wheats (AC Domain, AC Barrie, AC Cora, AC Majestic) were more resistant. Forty-seven virulence phenotypes of leaf rust were described in 1997 using 16 near-isogenic differential lines of Thatcher wheat. Phenotypes with virulence to Lr16 comprised 16% of the isolates in Manitoba and Saskatchewan in 1997. Many recently released Canadian spring wheats have Lr16 in addition to adult plant resistance genes. Thirty-three isolates also were tested for virulence to plants with adult plant resistance genes Lr12, Lr13, Lr34, and Lr13,34. Most isolates were virulent to genes Lr12 and Lr13. All isolates had lower infection types on lines with Lr34 compared with the susceptible line Thatcher.


Author(s):  
G. V. Volkova ◽  
O. A. Kudinova ◽  
O. F. Vaganova

Currently, more than 70 wheat rust resistance genes are known, but few of them are effective. The purpose of this work is to screen lines of Lr gene carriers for resistance to leaf rust under conditions of the North Caucasus region. Investigations were carried out in 2016-2018 at the infectious site of VNIIBZR. Research material was 49 near isogenic lines of winter wheat cultivar Thatcher. Infectious material was the combined populations of P. triticina, obtained as a result of route surveys of industrial and breeding crops of winter wheat in the areas of the Krasnodar, Stavropol Territories and the Rostov Region, conducted in 2016-2018. According to the assessment, the genes are ranked as follows: - highly efficient genes (plants with no signs of damage): Lr9, Lr42, Lr43 + 24 and Lr50; effective (1R-5R) Lr genes: 19, 24, 29, 36, 37, 38, 45, 47; moderately effective (10MR-20MR) Lr genes: 17, 18, 21, 22a, 28, 32, 41, 52. The remaining Lr-lines were susceptible to P. triticina (25 MR - 90S) to varying degrees. Highly efficient and effective genes Lr9, Lr19, Lr24, Lr29, Lr38, Lr42, Lr43 + 24, Lr47 and Lr50 showed resistance in the seedling phase and can be recommended for inclusion in breeding programs to protect wheat from leaf rust in different phases of plant ontogenesis in the North Caucasus region.


Author(s):  
Yu Wang ◽  
Jiantao Wang ◽  
Haiping Wang ◽  
Xinyu Yang ◽  
Liming Chang ◽  
...  

Objective: Accurate assessment of breast tumor size preoperatively is important for the initial decision-making in surgical approach. Therefore, we aimed to compare efficacy of mammography and ultrasonography in ductal carcinoma in situ (DCIS) of breast cancer. Methods: Preoperative mammography and ultrasonography were performed on 104 women with DCIS of breast cancer. We compared the accuracy of each of the imaging modalities with pathological size by Pearson correlation. For each modality, it was considered concordant if the difference between imaging assessment and pathological measurement is less than 0.5cm. Results: At pathological examination tumor size ranged from 0.4cm to 7.2cm in largest diameter. For mammographically determined size versus pathological size, correlation coefficient of r was 0.786 and for ultrasonography it was 0.651. Grouped by breast composition, in almost entirely fatty and scattered areas of fibroglandular dense breast, correlation coefficient of r was 0.790 for mammography and 0.678 for ultrasonography; in heterogeneously dense and extremely dense breast, correlation coefficient of r was 0.770 for mammography and 0.548 for ultrasonography. In microcalcification positive group, coeffient of r was 0.772 for mammography and 0.570 for ultrasonography. In microcalcification negative group, coeffient of r was 0.806 for mammography and 0.783 for ultrasonography. Conclusion: Mammography was more accurate than ultrasonography in measuring the largest cancer diameter in DCIS of breast cancer. The correlation coefficient improved in the group of almost entirely fatty/ scattered areas of fibroglandular dense breast or in microcalcification negative group.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Wasan Katip ◽  
Jukapun Yoodee ◽  
Suriyon Uitrakul ◽  
Peninnah Oberdorfer

AbstractColistin provides in vitro activity against numerous ESBL-producing and carbapenem-resistant bacteria. However, clinical information with respect to its utilization in infection caused by ESBL producers is limited. The aim of this study was a comparison of mortality rates of loading dose (LD) colistin and carbapenems as definitive therapies in a cohort of patients with infections caused by ESBL-producing Escherichia coli and Klebsiella pneumoniae. A retrospective cohort study in 396 patients with ESBL-producing E.coli and K.pneumoniae infection at a university-affiliated hospital was conducted between 1 January 2005 and 30 June 2015 to compare outcomes of infected patients who received LD colistin (95 patients) with carbapenems (301 patients). The three primary outcomes were 30-day mortality, clinical response and microbiological response. The most common infection types were urinary tract infection (49.49%), followed by pneumonia (40.66%), bacteremia (13.64%), skin and soft tissue infections (4.80%) and intra-abdominal infection (3.03%). LD colistin group provided higher 30-day mortality when compared with carbapenems group (HR 7.97; 95% CI 3.68 to 17.25; P = 0.001). LD colistin was also independently associated with clinical failure (HR 4.30; 95% CI 1.93 to 9.57; P = 0.001) and bacteriological failure (HR 9.49; 95% CI 3.76 to 23.96; P = 0.001) when compared with those who received carbapenems. LD colistin treatment was associated with poorer outcomes, i.e. mortality rate, clinical response and microbiological response. Moreover, when adjusted confounding factors, LD colistin was still less effective than carbapenems. It should be noted that, however, the use of Vitek-2 to assess colistin susceptibility could provide inaccurate results. Also, the difference in baseline characteristics could still remain in retrospective study although compensation by hazard ratio adjustment was performed. Therefore, clinical utilization of LD colistin should be recommended as an alternative for treatment ESBL-producing Enterobacteriaceae only in the circumstances where carbapenems cannot be utilized, but this recommendation must be considered carefully.


Water ◽  
2021 ◽  
Vol 13 (10) ◽  
pp. 1409
Author(s):  
Hamdhani Hamdhani ◽  
Drew E. Eppehimer ◽  
David Walker ◽  
Michael T. Bogan

Chlorophyll-a measurements are an important factor in the water quality monitoring of surface waters, especially for determining the trophic status and ecosystem management. However, a collection of field samples for extractive analysis in a laboratory may not fully represent the field conditions. Handheld fluorometers that can measure chlorophyll-a in situ are available, but their performance in waters with a variety of potential light-interfering substances has not yet been tested. We tested a handheld fluorometer for sensitivity to ambient light and turbidity and compared these findings with EPA Method 445.0 using water samples obtained from two urban lakes in Tucson, Arizona, USA. Our results suggested that the probe was not sensitive to ambient light and performed well at low chlorophyll-a concentrations (<25 µg/L) across a range of turbidity levels (50–70 NTU). However, the performance was lower when the chlorophyll-a concentrations were >25 µg/L and turbidity levels were <50 NTU. To account for this discrepancy, we developed a calibration equation to use for this handheld fluorometer when field monitoring for potential harmful algal blooms in water bodies.


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