scholarly journals Rapid PCR-based Detection of Phytoplasmas from Infected Plants

HortScience ◽  
2003 ◽  
Vol 38 (6) ◽  
pp. 1134-1136 ◽  
Author(s):  
Yonghong Guo ◽  
Zong-Ming Cheng ◽  
James A. Walla

Five simplified DNA preparation procedures for polymerase chain reaction (PCR) amplification were tested for detection of phytoplasmas from infected herbaceous and woody plants. Thin freehand cross-sections made from infected plant tissues and stored in acetone were used as sources for DNA preparation. The tissue sections were treated by: 1) grinding in sodium hydroxide; 2) sonicating in water; 3) microwaving in water; 4) boiling in sodium hydroxide; or 5) placing directly in PCR tube. PCR amplification was performed with a universal phytoplasma-specific primer pair in a reaction buffer containing 0.5% (v/v) Triton X-100, 1.5 mm magnesium chloride, and 10 mm Tris-HCl. All five procedures provided phytoplasmal template DNA for successful PCR amplification from infected herbaceous plants {periwinkle [Catharanthus roseus (L.) G. Don (periwinkle)], carrot (Daucus carota L.), maize (Zea mays L.)}, while the grinding, microwaving, and boiling procedures also allowed positive amplification from a woody plant [green ash (Fraxinus pennsylvanica Marsh.)]. The quality of the resulting DNA was adequate for subsequent identification of the aster yellows and ash yellows phytoplasmas through nested-PCR using phytoplasma group-specific primer pairs. These methods provide remarkable savings in labor and materials, making disease testing and indexing of plant materials much more attractive.

1973 ◽  
Vol 12 (2) ◽  
pp. 345-367
Author(s):  
R. W. LINCK

Gill cilia and sperm flagella from the lamellibranch mollusc Aequipecten irradians were compared with respect to their ultrastructures and adenosinetriphosphatase activities. Cilia were isolated from excised gills using 3 different solutions: twice-concentrated seawater, 10 % ethanol-10 mM CaCl2 and 60% glycerol. In each case deciliation occurs by the severance of the cilium at the junction of the transition zone and the basal body, and in each case the ciliary ultrastructure is maintained. Sperm flagella were purified by mechanical decapitation. Cilia and sperm flagella have similar fine structures, except that the matrix of the cilia contains substantially more electron-dense material than that of flagella. The ATPase activity of purified cilia is approximately 0.09,µmol P1/min/mg protein; that of flagella is 0.13. Ciliary and flagellar axonemes were prepared by repeated extraction of the membranes with 1% Triton X-100. Ciliary axonemes maintain their 9 + 2 cylindrical orientation, whereas flagellar axonemes often appear as opened or fragmented arrays of the 9 + 2 structure, due to the partial breakdown of the flagellar nexin fibres. A-subfibre arms which were obvious in whole organelles are rarely seen in axoneme preparations. Again the ciliary matrix is considerably more amorphous than in flagellar axonemes. The ATPase activities of ciliary and flagellar axonemes are 0.13 and 0.12 µmol P1/min/mg protein respectively; however, activities of ciliary axonemes may vary by a factor of 2, depending on the method of isolation. The difficulty in observing A-subfibre arms in cross-sections of ciliary and flagellar axonemes is discussed in terms of random, non-reinforcing arrangements of the dynein arms.


Geopolymer concrete plays a major role in concrete industry by replacing cement and using the industrial wastes. In this study, the cement is completely replaced by GGBS and strength properties are analyzed. An M30 mix design is prepared and the specimens are cast and tested. For this, sodium hydroxide and sodium silicate are used as activator and its ratio is fixed as 1:2.5. Sodium hydroxide of 12 molarity, 550kg/m3 of GGBS is used in the study. Admixture La Hypercrete S25 (HTS code 38244090) is added in the mix by 1% of weight of GGBS to obtain the required workability. For compression study, cubes in 100 mm size are cast. Cylinders with 100mm dia and 200mm height are tested for splitting tensile strength and beam specimens of 500mm long and 100mm cross sections were cast for determining the flexure behaviour. The beams are subjected to ambient curing and tested at 3, 7, 14, 28 and 56 days. The test result shows that there is a gradual increment in all the strengths from 3 to 56 days and it proves that geopolymer concrete with GGBS cured at ambient temperature performs well in the strength properties.


2010 ◽  
Vol 5 (4) ◽  
pp. 1934578X1000500
Author(s):  
Moses S. Owolabi ◽  
Labunmi Lajide ◽  
Matthew O. Oladimeji ◽  
William N. Setzer

The concerns over safety and environmental impact of synthetic pesticides such as chlorpropham (CIPC) has stimulated interest in finding environmentally benign, natural sprout suppressants, including essential oils. The effects of Chenopodium ambrosioides and Lippia multiflora essential oils on sprout growth and decay of stored potatoes has been investigated. Formulations of essential oils with alumina, bentonite, or kaolin, both with and without Triton X-100 additive, were tested. These formulations have been compared to the pulverized plant materials themselves as well as wick-volatilized essential oils. The results showed that the tested oils possess compositions that make them suitable for application as sprout suppressants. Additionally, the formulation seems to be able to reduce the volatility of the essential oil and artificially extend dormancy of stored potatoes.


2017 ◽  
Vol 27 (5) ◽  
pp. 299-305 ◽  
Author(s):  
Adam Kuzdraliński ◽  
Anna Kot ◽  
Hubert Szczerba ◽  
Agnieszka Ostrowska ◽  
Michał Nowak ◽  
...  

The species <i>Puccinia triticina</i> (Pt) and <i>Puccinia striiformis</i> f. sp. <i>tritici </i>(Pst) are devastating cereal pathogens that cause leaf and stripe rust diseases. We developed PCR assays for the species-specific detection of Pt and Pst, 2 biological agents that cause wheat rust disease. For each pathogen, we validated 3 primer sets that target the second largest subunits of the RNA polymerase II (<i>rpb2</i>) and β-tubulin 1 (<i>tub1</i>) genes. The specificities of the primers were verified using naturally infected plant materials with visual symptoms of disease. All primer sets amplified a single DNA fragment of the expected length. The primer sets LidPr15/16, LidPr1/2, and LidPs13/14 were able to detect small amounts of pure fungal DNA with sensitivities of 0.1, 1, and 10 pg/μL, respectively. A sufficient detection limit (1 pg/μL to 5 ng/μL) was observed for all assays when the sensitivity test was performed with host plant DNA. The study also evaluated the simultaneous detection of both rust pathogens, and the multiplex PCR assay generated amplicons of 240 and 144 bp in length for Pts (LidPs9/10) and Pt (LidPr1/2), respectively.


HortScience ◽  
1993 ◽  
Vol 28 (12) ◽  
pp. 1188-1190 ◽  
Author(s):  
Amnon Levi ◽  
Lisa J. Rowland ◽  
John S. Hartung

A procedure for identifying reproducible RAPD markers from woody plant DNA is presented. The procedure relies on using a PCR buffer that contains 1% Triton-X-100 and 0.1 % gelatin [previously described for successful polymerase chain reaction (PCR) amplification of 16S/23S rRNA intergenic spacer regions from eubacteria], and amplification conditions of 50 cycles: 30 sec at 94C, 70 sec at 48C, and 120 sec at 72C. The combination of this buffer and these conditions amplified consistent fragments in higher amounts, as compared to other standard PCR buffers and conditions generally used for RAPD analysis. This procedure resulted in reliable RAPD patterns for all organisms tested. Chemical name used: α-[4-(1,1,3,3,-tetramethylbutyl)phenyl]-cohydroxypoly(oxy-l,2-ethanediyl) (Triton-X-l00).


Plant Disease ◽  
2014 ◽  
Vol 98 (10) ◽  
pp. 1435-1435 ◽  
Author(s):  
R. García-Ruiz ◽  
A. B. García-Carneros ◽  
L. Molinero-Ruiz

Sunflower (Helianthus annuus L.) plants with symptoms of interveinal chlorosis were observed in the summer of 2013 in one field in Cadiz (Spain) where the performance of 30 hybrids was assessed. Symptoms affected 80% of the hybrids with incidence as high as 90%. Chlorosis and yellowing near the leaf margin were visible at floral initiation, and they progressed from the lower to upper leaves. Mottled leaves were observed near the top of the plants. On severely affected leaves, chlorotic patches enlarged, coalesced, and large areas of the leaves became necrotic and dried. Cross sections of the lower stem showed a brown discoloration of the vascular system. The fungus that was consistently isolated from stem and petiole tissues of sunflower plants was morphologically identified as Verticillium dahliae Kleb. (Vd) (5) and molecularly confirmed by PCR amplification of the 526-bp band (4). The race of the isolates was determined in a greenhouse experiment at 18 to 28°C from February to April 2014. Isolates 1-13 and 2-13 of Vd, obtained from two of the hybrids in 2013, one of them being Transol, were independently inoculated to 1-month-old plants of each of three sunflower genotypes: the susceptible hybrid Transol and the inbred lines HA89 (carrying the V1 gene for resistance to Vd) (2) and HAR5 (resistant to other diseases but with unknown reaction to Vd). Plants were inoculated by immersing roots in a suspension of 106 conidia per ml for 30 min. Inoculated plants were individually transplanted to 1-liter pots filled with sand/silt. Roots of the control treatments were immersed in water. Six replications (pots) were established for each isolate × genotype combination, according to a complete randomized 3 × 3 factorial design. Five weeks after inoculation, symptoms developed in 100% of the plants in the three sunflower genotypes. Severity of symptoms (SS) in each plant was assessed as percentage of foliar tissue affected. Significantly higher SS occurred on inoculated plants as compared to non-inoculated plants, which did not develop symptoms. Mean disease severity on inoculated plants was 80% (averaged across isolates and genotypes). A significant effect of genotypes was obtained. Mean SS averaged across isolates were 98, 73, and 69% for HAR5, HA89, and Transol, respectively. When stem tissues from the three sunflower genotypes were sampled and incubated on potato dextrose agar at 25°C, the mycelial growth of Vd was confirmed for the inoculated plants but not for the control plants. Isolates of Vd infecting the resistant inbred line HA89 have only been identified in Argentina (1) and the United States (3). To our knowledge, this is the first report of a race overcoming the V1 gene in HA89 in Europe. This poses a risk to commercial sunflower breeding programs in European countries. References: (1) A. B. Bertero de Romano and A. Vázquez. Page 177 in: Proc. 10th Int. Sunf. Conf., Surfers Paradise, Australia, 1982. (2) G. N. Fick and D. E. Zimmer. Crop Sci. 14:895, 1974. (3) T. Gulya. Helia 30:115, 2007. (4) J. Mercado-Blanco et al. Plant Dis. 87:1487, 2003. (5) W. E. Sackston. Plant Dis. Rep. 41:885, 1957.


Molecules ◽  
2019 ◽  
Vol 24 (6) ◽  
pp. 1025 ◽  
Author(s):  
Michał Miłek ◽  
Dana Marcinčáková ◽  
Jaroslav Legáth

This experiment was conducted with extracts prepared from dandelion (Taraxacum officinale F. H. Wigg) leaves and flowers, using the micelle-mediated extraction method, with the surface active compound Triton X-100 and water–acetone as the extraction solvents. Extracts were, first, examined for the content of total phenols and the antioxidant capacity. All extracts showed good anti-radical properties, especially for leaves, in comparison to the flower samples. Flavonoids (mainly luteolin derivatives) and phenolic acids, predominated among the determined polyphenols. Quantitative analyses indicated acetone extract to be the richest in phenols (up to 0.535 mg/mL), in the case of dandelion leaves, and Triton X-100 extract in the case of flowers (0.385 mg/mL). Extracts were also evaluated for cytotoxicity to the model cell line (epithelial rabbit kidney cells RK13), using the colorimetric 3-[4,5-dimethylthiazole-2-yl]-2,5-diphenyltetrazolium bromide (MTT) test and the real-time cell analysis method ((RTCA); xCELLigence system). The obtained results indicated that surfactants, especially non-ionic ones, can be effectively used as modifiers in the aqueous extraction of phenolic compounds from plant materials. An advantage over the traditional organic solvents is their non-flammability. Furthermore, surfactants might also be used at low concentrations. Studies on cell lines, however, indicated the cytotoxic effect of this type of compound, even in the trace amounts present in the extracts.


2004 ◽  
Vol 48 (10) ◽  
pp. 787-790 ◽  
Author(s):  
Masatoshi Okura ◽  
Ro Osawa ◽  
Atsushi Iguchi ◽  
Michihiro Takagi ◽  
Eiji Arakawa ◽  
...  

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