scholarly journals Federated Learning for Thyroid Ultrasound Image Analysis to Protect Personal Information: Validation Study in a Real Health Care Environment (Preprint)

2020 ◽  
Author(s):  
Haeyun Lee ◽  
Young Jun Chai ◽  
Hyunjin Joo ◽  
Kyungsu Lee ◽  
Jae Youn Hwang ◽  
...  
Keyword(s):  
Image Analysis ◽  
Deep Learning ◽  
Data Privacy ◽  
Personal Information ◽  
External Validation ◽  
Ultrasound Image ◽  
Medical Data ◽  
Ultrasound Images ◽  
Health Care Environment ◽  
Internal Validation

BACKGROUND Federated learning is a decentralized approach to machine learning; it is a training strategy that overcomes medical data privacy regulations and generalizes deep learning algorithms. Federated learning mitigates many systemic privacy risks by sharing only the model and parameters for training, without the need to export existing medical data sets. In this study, we performed ultrasound image analysis using federated learning to predict whether thyroid nodules were benign or malignant. OBJECTIVE The goal of this study was to evaluate whether the performance of federated learning was comparable with that of conventional deep learning. METHODS A total of 8457 (5375 malignant, 3082 benign) ultrasound images were collected from 6 institutions and used for federated learning and conventional deep learning. Five deep learning networks (VGG19, ResNet50, ResNext50, SE-ResNet50, and SE-ResNext50) were used. Using stratified random sampling, we selected 20% (1075 malignant, 616 benign) of the total images for internal validation. For external validation, we used 100 ultrasound images (50 malignant, 50 benign) from another institution. RESULTS For internal validation, the area under the receiver operating characteristic (AUROC) curve for federated learning was between 78.88% and 87.56%, and the AUROC for conventional deep learning was between 82.61% and 91.57%. For external validation, the AUROC for federated learning was between 75.20% and 86.72%, and the AUROC curve for conventional deep learning was between 73.04% and 91.04%. CONCLUSIONS We demonstrated that the performance of federated learning using decentralized data was comparable to that of conventional deep learning using pooled data. Federated learning might be potentially useful for analyzing medical images while protecting patients’ personal information.

Automated Pancreas Segmentation And Volumetry Using Deep Neural Network On Computed Tomography

2021 ◽  
Author(s):  
Sang-Heon Lim ◽  
Young Jae Kim ◽  
Yeon-Ho Park ◽  
Doojin Kim ◽  
Kwang Gi Kim ◽  
...  
Keyword(s):  
Computed Tomography ◽  
Deep Learning ◽  
Automatic Segmentation ◽  
External Validation ◽  
Three Dimensional ◽  
Semantic Segmentation ◽  
Quantitative Information ◽  
Similarity Coefficients ◽  
Internal Validation ◽  
Pancreas Segmentation

Abstract Pancreas segmentation is necessary for observing lesions, analyzing anatomical structures, and predicting patient prognosis. Therefore, various studies have designed segmentation models based on convolutional neural networks for pancreas segmentation. However, the deep learning approach is limited by a lack of data, and studies conducted on a large computed tomography dataset are scarce. Therefore, this study aims to perform deep-learning-based semantic segmentation on 1,006 participants and evaluate the automatic segmentation performance of the pancreas via four individual three-dimensional segmentation networks. In this study, we performed internal validation with 1,006 patients and external validation using the Cancer Imaging Archive (TCIA) pancreas dataset. We obtained mean precision, recall, and dice similarity coefficients of 0.869, 0.842, and 0.842, respectively, for internal validation via a relevant approach among the four deep learning networks. Using the external dataset, the deep learning network achieved mean precision, recall, and dice similarity coefficients of 0.779, 0.749, and 0.735, respectively. We expect that generalized deep-learning-based systems can assist clinical decisions by providing accurate pancreatic segmentation and quantitative information of the pancreas for abdominal computed tomography.

scholarly journals Deep Learning Model for Screening Sepsis Using Electrocardiography

2021 ◽  
Author(s):  
Joon-myoung Kwon ◽  
Ye Rang Lee ◽  
Min-Seung Jung ◽  
Yoon-Ji Lee ◽  
Yong-Yeon Jo ◽  
...  
Keyword(s):  
Septic Shock ◽  
Deep Learning ◽  
Characteristic Curve ◽  
External Validation ◽  
Medical Emergency ◽  
Validation Dataset ◽  
Internal Validation ◽  
Significant Difference ◽  
Life Threatening ◽  
Sepsis And Septic Shock

Abstract Background: Sepsis is a life-threatening organ dysfunction and is a major healthcare burden worldwide. Although sepsis is a medical emergency that requires immediate management, it is difficult to screen the occurrence of sepsis. In this study, we propose an artificial intelligence based on deep learning-based model (DLM) for screening sepsis using electrocardiography (ECG).Methods: This retrospective cohort study included 46,017 patients who admitted to two hospitals. 1,548 and 639 patients underwent sepsis and septic shock. The DLM was developed using 73,727 ECGs of 18,142 patients and internal validation was conducted using 7,774 ECGs of 7,774 patients. Furthermore, we conducted an external validation with 20,101 ECGs of 20,101 patients from another hospital to verify the applicability of the DLM across centers.Results: During the internal and external validation, the area under the receiver operating characteristic curve (AUC) of an DLM using 12-lead ECG for screening sepsis were 0.901 (95% confidence interval 0.882–0.920) and 0.863 (0.846–0.879), respectively. During internal and external validation, AUC of an DLM for detecting septic shock were 0.906 (95% CI = 0.877–0.936) and 0.899 (95% CI = 0.872–0.925), respectively. The AUC of the DLM for detecting sepsis using 6-lead and single-lead ECGs were 0.845–0.882. A sensitivity map showed that the QRS complex and T wave was associated with sepsis. Subgroup analysis was conducted using ECGs from 4,609 patients who admitted with infectious disease, The AUC of the DLM for predicting in-hospital mortality was 0.817 (0.793–0.840). There was a significant difference in the prediction score of DLM using ECG according to the presence of infection in the validation dataset (0.277 vs 0.574, p<0.001), including severe acute respiratory syndrome coronavirus 2 (0.260 vs 0.725, p=0.018).Conclusions: The DLM demonstrated reasonable performance for screening sepsis using 12-, 6-, and single-lead ECG. The results suggest that sepsis can be screened using not only conventional ECG devices, but also diverse life-type ECG machine employing the DLM, thereby preventing irreversible disease progression and mortality.

scholarly journals Ultrasound Medical Images Classification Based on Deep Learning Algorithms: A Review

2021 ◽  
pp. 29-42
Author(s):  
admin admin ◽  
◽  
◽  
Adnan Mohsin Abdulazeez
Keyword(s):  
Neural Networks ◽  
Deep Learning ◽  
Recurrent Neural Networks ◽  
Ultrasound Image ◽  
Smart Devices ◽  
Learning Approach ◽  
Ultrasound Images ◽  
Medical Field ◽  
Modern Methods

With the development of technology and smart devices in the medical field, the computer system has become an essential part of this development to learn devices in the medical field. One of the learning methods is deep learning (DL), which is a branch of machine learning (ML). The deep learning approach has been used in this field because it is one of the modern methods of obtaining accurate results through its algorithms, and among these algorithms that are used in this field are convolutional neural networks (CNN) and recurrent neural networks (RNN). In this paper we reviewed what have researchers have done in their researches to solve fetal problems, then summarize and carefully discuss the applications in different tasks identified for segmentation and classification of ultrasound images. Finally, this study discussed the potential challenges and directions for applying deep learning in ultrasound image analysis.

scholarly journals Deep Learning-Based Breast Cancer Diagnosis at Ultrasound: Initial Application of Weakly-Supervised Algorithm Without Image Annotation Original Research

2021 ◽  
Author(s):  
Jaeil Kim ◽  
Hye Jung Kim ◽  
Chanho Kim ◽  
Jin Hwa Lee ◽  
Keum Won Kim ◽  
...  
Keyword(s):  
Breast Cancer ◽  
Deep Learning ◽  
Image Annotation ◽  
Characteristic Curve ◽  
External Validation ◽  
Region Of Interest ◽  
Breast Cancer Diagnosis ◽  
Original Research ◽  
Internal Validation ◽  
Weakly Supervised

Abstract Conventional deep learning (DL) algorithm requires full supervision of annotating the region of interest (ROI) that is laborious and often biased. We aimed to develop a weakly-supervised DL algorithm that diagnosis breast cancer at ultrasound without image annotation. Weakly-supervised DL algorithms were implemented with three networks (VGG16, ResNet34, and GoogLeNet) and trained using 1000 unannotated US images (500 benign and 500 malignant masses). Two sets of 200 images (100 benign and 100 malignant masses) were used for internal and external validation sets. For comparison with fully-supervised algorithms, ROI annotation was performed manually and automatically. Diagnostic performances were calculated as the area under the receiver operating characteristic curve (AUC). Using the class activation map, we determined how accurately the weakly-supervised DL algorithms localized the breast masses. For internal validation sets, the weakly-supervised DL algorithms achieved excellent diagnostic performances, with AUC values of 0.92–0.96, which were not statistically different (all Ps > 0.05) from those of fully-supervised DL algorithms with either manual or automated ROI annotation (AUC, 0.92–0.96). For external validation sets, the weakly-supervised DL algorithms achieved AUC values of 0.86–0.90, which were not statistically different (Ps > 0.05) or higher (P = 0.04, VGG16 with automated ROI annotation) from those of fully-supervised DL algorithms (AUC, 0.84–0.92). In internal and external validation sets, weakly-supervised algorithms could localize 100% of malignant masses, except for ResNet34 (98%). The weakly-supervised DL algorithms developed in the present study were feasible for US diagnosis of breast cancer with well-performing localization and differential diagnosis.

scholarly journals A new deep learning algorithm of 12-lead electrocardiogram for identifying atrial fibrillation during sinus rhythm

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yong-Soo Baek ◽  
Sang-Chul Lee ◽  
Wonik Choi ◽  
Dae-Hyeok Kim
Keyword(s):  
Atrial Fibrillation ◽  
Deep Learning ◽  
Sinus Rhythm ◽  
Learning Algorithm ◽  
Normal Sinus Rhythm ◽  
Characteristic Curve ◽  
External Validation ◽  
Digital Data ◽  
Internal Validation ◽  
Optimal Interval

AbstractAtrial fibrillation (AF) is the most prevalent arrhythmia and is associated with increased morbidity and mortality. Its early detection is challenging because of the low detection yield of conventional methods. We aimed to develop a deep learning-based algorithm to identify AF during normal sinus rhythm (NSR) using 12-lead electrocardiogram (ECG) findings. We developed a new deep neural network to detect subtle differences in paroxysmal AF (PAF) during NSR using digital data from standard 12-lead ECGs. Raw digital data of 2,412 12-lead ECGs were analyzed. The artificial intelligence (AI) model showed that the optimal interval to detect subtle changes in PAF was within 0.24 s before the QRS complex in the 12-lead ECG. We allocated the enrolled ECGs to the training, internal validation, and testing datasets in a 7:1:2 ratio. Regarding AF identification, the AI-based algorithm showed the following values in the internal and external validation datasets: area under the receiver operating characteristic curve, 0.79 and 0.75; recall, 82% and 77%; specificity, 78% and 72%; F1 score, 75% and 74%; and overall accuracy, 72.8% and 71.2%, respectively. The deep learning-based algorithm using 12-lead ECG demonstrated high accuracy for detecting AF during NSR.

scholarly journals Multi-Features-Based Automated Breast Tumor Diagnosis Using Ultrasound Image and Support Vector Machine

2021 ◽  
Vol 2021 ◽  
pp. 1-12
Author(s):  
Zhemin Zhuang ◽  
Zengbiao Yang ◽  
Shuxin Zhuang ◽  
Alex Noel Joseph Raj ◽  
Ye Yuan ◽  
...  
Keyword(s):  
Support Vector Machine ◽  
Deep Learning ◽  
Breast Tumor ◽  
Ultrasound Image ◽  
Breast Ultrasound ◽  
Tumor Diagnosis ◽  
Support Vector ◽  
Ultrasound Images ◽  
Deep Learning Features ◽  
Characteristic Features

Breast ultrasound examination is a routine, fast, and safe method for clinical diagnosis of breast tumors. In this paper, a classification method based on multi-features and support vector machines was proposed for breast tumor diagnosis. Multi-features are composed of characteristic features and deep learning features of breast tumor images. Initially, an improved level set algorithm was used to segment the lesion in breast ultrasound images, which provided an accurate calculation of characteristic features, such as orientation, edge indistinctness, characteristics of posterior shadowing region, and shape complexity. Simultaneously, we used transfer learning to construct a pretrained model as a feature extractor to extract the deep learning features of breast ultrasound images. Finally, the multi-features were fused and fed to support vector machine for the further classification of breast ultrasound images. The proposed model, when tested on unknown samples, provided a classification accuracy of 92.5% for cancerous and noncancerous tumors.

scholarly journals Deep Learning-Based Three-dimensional Transvaginal Ultrasound in Diagnosis of Intrauterine Adhesion

2021 ◽  
Vol 2021 ◽  
pp. 1-8
Author(s):  
Ji Li ◽  
Dan Liu ◽  
Xiaofeng Qing ◽  
Lanlan Yu ◽  
Huizhen Xiang
Keyword(s):  
Deep Learning ◽  
Learning Algorithm ◽  
Transvaginal Ultrasound ◽  
Three Dimensional ◽  
Ultrasound Image ◽  
Ultrasound Images ◽  
Diagnostic Efficiency ◽  
Research Subjects ◽  
Partial Differential ◽  
Intrauterine Adhesion

This study was aimed to enhance and detect the characteristics of three-dimensional transvaginal ultrasound images based on the partial differential algorithm and HSegNet algorithm under deep learning. Thereby, the effect of quantitative parameter values of optimized three-dimensional ultrasound image was analyzed on the diagnosis and evaluation of intrauterine adhesions. Specifically, 75 patients with suspected intrauterine adhesion in hospital who underwent the hysteroscopic diagnosis were selected as the research subjects. The three-dimensional transvaginal ultrasound image was enhanced and optimized by the partial differential equation algorithm and processed by the deep learning algorithm. Subsequently, three-dimensional transvaginal ultrasound examinations were performed on the study subjects that met the standards. The March classification method was used to classify the patients with intrauterine adhesion. Finally, the results by the three-dimensional transvaginal ultrasound were compared with the diagnosis results in hysteroscope surgery. The results showed that the HSegNet algorithm model realized the automatic labeling of intrauterine adhesion in the transvaginal ultrasound image and the final accuracy coefficient was 97.3%. It suggested that the three-dimensional transvaginal ultrasound diagnosis based on deep learning was efficient and accurate. The accuracy of the three-dimensional transvaginal ultrasound was 97.14%, the sensitivity was 96.6%, and the specificity was 72%. In conclusion, the three-dimensional transvaginal examination can effectively improve the diagnostic efficiency of intrauterine adhesion, providing theoretical support for the subsequent diagnosis and grading of intrauterine adhesion.

scholarly journals Predicting Sex from Retinal Fundus Photographs Using Automated Deep Learning

2021 ◽  
Author(s):  
Edward Korot ◽  
Nikolas Pontikos ◽  
Xiaoxuan Liu ◽  
Siegfried K Wagner ◽  
Livia Faes ◽  
...  
Keyword(s):  
Deep Learning ◽  
Characteristic Curve ◽  
External Validation ◽  
Model Development ◽  
Model Performance ◽  
Validation Dataset ◽  
Internal Validation ◽  
Fundus Photographs ◽  
The Uk ◽  
Retinal Fundus

Abstract Deep learning may transform health care, but model development has largely been dependent on availability of advanced technical expertise. Herein we present the development of a deep learning model by clinicians without coding, which predicts reported sex from retinal fundus photographs. A model was trained on 84,743 retinal fundus photos from the UK Biobank dataset. External validation was performed on 252 fundus photos from a tertiary ophthalmic referral center. For internal validation, the area under the receiver operating characteristic curve (AUROC) of the code free deep learning (CFDL) model was 0.93. Sensitivity, specificity, positive predictive value (PPV) and accuracy (ACC) were 88.8%, 83.6%, 87.3% and 86.5%, and for external validation were 83.9%, 72.2%, 78.2% and 78.6% respectively. Clinicians are currently unaware of distinct retinal feature variations between males and females, highlighting the importance of model explainability for this task. The model performed significantly worse when foveal pathology was present in the external validation dataset, ACC: 69.4%, compared to 85.4% in healthy eyes, suggesting the fovea is a salient region for model performance OR (95% CI): 0.36 (0.19, 0.70) p = 0.0022. Automated machine learning (AutoML) may enable clinician-driven automated discovery of novel insights and disease biomarkers.

scholarly journals DEEP LEARNING TO PREDICT DEGREE OF INTERSTITIAL FIBROSIS AND TUBULAR ATROPHY FROM KIDNEY ULTRASOUND IMAGES - AN ARTIFICIAL INTELLIGENCE APPROACH

2020 ◽  
Author(s):  
Ambarish M Athavale ◽  
Peter D Hart ◽  
Matthew Itteera ◽  
Tushar Patel ◽  
David J Cymbaluk ◽  
...  
Keyword(s):  
Deep Learning ◽  
Kidney Biopsy ◽  
Interstitial Fibrosis ◽  
Strong Predictor ◽  
Ultrasound Image ◽  
Ultrasound Images ◽  
Tubular Atrophy ◽  
Invasive Test ◽  
Learning Classifier ◽  
Validation Set

Background: Interstitial fibrosis and tubular atrophy (IFTA) is a strong predictor of decline in kidney function. Non-invasive test to assess IFTA is not available. Methods: We trained, validated and tested a deep learning (DL) system to classify IFTA grade from 6,135 ultrasound images obtained from 352 patients who underwent kidney biopsy. Of 6,135 ultrasound images, 5,523 were used for training (n = 5,122) and validation (n = 401) and 612 to test the accuracy of the DL system. IFTA grade scored by nephropathologist on trichrome stained kidney biopsy slide was used as reference standard. Results: There were 159 patients (2,701 ultrasound images), 74 patients (1,239 ultrasound images), 41 patients (701 ultrasound images) and 78 patients (1,494 ultrasound images) with IFTA grades 1, 2, 3 and 4, respectively. The deep-learning classification system used masked images based on a 91% accurate kidney segmentation routine. The performance matrices for the deep learning classifier algorithm in the validation set showed excellent precision (90%), recall (76%), accuracy (84%) and F1-score (80%). In the independent test set also, performance matrices showed excellent precision (90%), recall (80%), accuracy (87%) and F1-score of (84%). Accuracy was highest for IFTA grade 1 (98%) and IFTA grade 4 (82%). Conclusion: A DL system can accurately predict IFTA from kidney ultrasound image.

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