scholarly journals An algal-bacterial symbiotic system of carbon fixation using formate as a carbon source

2021 ◽  
Author(s):  
Yurui Zheng ◽  
Jeffrey Czajka ◽  
Carly Daiek ◽  
Yinjie J. Tang ◽  
Liangliang Sun ◽  
...  
Keyword(s):  
Carbon Source ◽  
Carbon Fixation ◽  
Algal Growth ◽  
Biomass Concentration ◽  
Value Added ◽  
Microbial Community Analysis ◽  
Symbiotic System ◽  
Bacterial Assemblage ◽  
Mass Transfer Limitation ◽  
Light Irradiance

Algae are an attractive option for CO2 sequestration due to their natural ability to simultaneously fix CO2 and accumulate algal biomass for value-added products. However, the commercial implementation of such technology for efficient capture of CO2 from fossil-derived flue gases is not a reality yet due to several major challenges, such as low gas-liquid mass transport efficiency and relatively high light irradiance demand of algal growth. This study explored an algal-bacterial symbiotic system to utilize formate, a potential intermediate liquid compound of CO2, as carbon source to support microbial growth. The algal-bacterial assemblage, after an adaptive evolution using the formate medium, demonstrated a new route to assimilate CO2 without using high pH cultivations and promote biomass production under low light irradiance condition. The formate based culture system not only resolves CO2 mass transfer limitation, but also expels algae grazers in non-sterilized cultivation conditions. Continuous cultivation of the assemblage on formate led to a carbon capture efficiency of 90% with biomass concentration of 0.92 g/L and biomass productivity of 0.31 g/L/day, which is significantly better than the control cultivation on saturated CO2. In addition, isotope tracing and microbial community analysis offer new insights into formate metabolism and algal-bacterial symbiosis under light and carbon conditions. This study demonstrates a promising route of using electrochemical-derived formate to support algal biorefining.

scholarly journals Bioproduction of succinic acid from xylose by engineered Yarrowia lipolytica without pH control

2020 ◽  
Author(s):  
Ashish Prabhu ◽  
Rodrigo Ledesma- Amaro ◽  
Carol Sze Ki Lin ◽  
Frederic Coulon ◽  
Vijay kumar Thakur ◽  
...  
Keyword(s):  
Cell Growth ◽  
Carbon Source ◽  
Succinic Acid ◽  
Yarrowia Lipolytica ◽  
Recombinant Strain ◽  
Sole Carbon Source ◽  
Substrate Inhibition ◽  
Biomass Concentration ◽  
Value Added ◽  
Green Economy

Abstract Background Xylose is a most prevalent sugar available in hemicellulose fraction of lignocellulosic biomass (LCB) and of great interest for the green economy. Unfortunately, most of the cell factories cannot inherently metabolize xylose as sole carbon source. Yarrowia lipolytica is a non-conventional yeast to produce industrially important metabolites, and it is able to metabolize a large variety of substrates including both hydrophilic and hydrophobic carbon sources. However, Y. lipolytica lacks effective metabolic pathway for xylose uptake and only scarce information is available on utilization of xylose. For the economically feasible of LCB-based biorefineries, effective utilization of both pentose and hexose sugars is obligatory. Results In the present study, succinic acid (SA) production from xylose by Y. lipolytica was examined. To this end, Y. lipolytica PSA02004 strain was engineered by overexpressing pentose pathway cassette comprising of xylose reductase ( XR ), xylitol dehydrogenase ( XDH ) and xylulose kinase ( XK ) gene. The recombinant strain exhibited a robust growth on xylose as sole carbon source and accumulated SA (3.8 g/L) with a yield of 0.19 g/g in shake flask studies. Substrate inhibition studies revealed a marked negative impact on cell growth and product formation above 60 g/L xylose concentration. The modelling based on inhibition kinetics revealed that Aiba model showed better fit with experimental data, which resulted the correlation coefficient (R 2 ) of 0.82 and inhibition constant (K I ) 88.9 g/L. The batch cultivation of recombinant strain in bioreactor resulted in a maximum biomass concentration of 7.3 g/L and SA titer of 11.2 g/L with the yield of 0.18 g/g. Similar results in term of cell growth and SA production were obtained with xylose-rich hydrolysate derived from sugarcane bagasse. The fed-batch fermentation yielded biomass concentration of 11.8 g/L (OD 600 : 56.1) and SA titer of 22.3 g/L with a gradual decrease in pH below 4.0. Acetic acid was obtained as a main byproduct in all the fermentations. Conclusion The recombinant strain displayed potential bioconversion of xylose to succinic acid. Further this study provided a new insight on conversion of LCB into value-added products. To the best of our knowledge, this is the first study on SA production by Y. lipolytica using xylose as a sole carbon source.

scholarly journals Bioproduction of succinic acid from xylose by engineered Yarrowia lipolytica without pH control

2020 ◽  
Author(s):  
Ashish Prabhu ◽  
Rodrigo Ledesma- Amaro ◽  
Carol Sze Ki Lin ◽  
Frederic Coulon ◽  
Vijay kumar Thakur ◽  
...  
Keyword(s):  
Cell Growth ◽  
Carbon Source ◽  
Succinic Acid ◽  
Lignocellulosic Biomass ◽  
Yarrowia Lipolytica ◽  
Recombinant Strain ◽  
Sole Carbon Source ◽  
Biomass Concentration ◽  
Value Added ◽  
Green Economy

Abstract Background : Xylose is a most prevalent sugar available in hemicellulose fraction of lignocellulosic biomass (LCB) and of great interest for the green economy. Unfortunately, most of the cell factories cannot inherently metabolize xylose as sole carbon source. Yarrowia lipolytica is a non-conventional yeast to produce industrially important metabolites. The yeast is able to metabolize a large variety of substrates including both hydrophilic and hydrophobic carbon sources. However, Y. lipolytica lacks effective metabolic pathway for xylose uptake and only scarce information is available on utilization of xylose. For the economically feasibility of LCB-based biorefineries, effective utilization of both pentose and hexose sugars is obligatory. Results : In the present study, succinic acid (SA) production from xylose by Y. lipolytica was examined. To this end, Y. lipolytica PSA02004 strain was engineered by overexpressing pentose pathway cassette comprising of xylose reductase ( XR ), xylitol dehydrogenase ( XDH ) and xylulose kinase ( XK ) gene. The recombinant strain exhibited a robust growth on xylose as sole carbon source and produced substantial amount of SA. The inhibition of cell growth and SA formation was observed above 60 g/L xylose concentration. The batch cultivation of recombinant strain in bioreactor resulted in a maximum biomass concentration of 7.3 g/L and SA titer of 11.2 g/L with the yield of 0.19 g/g. Similar results in term of cell growth and SA production were obtained with xylose-rich hydrolysate derived from sugarcane bagasse. The fed-batch fermentation yielded biomass concentration of 11.8 g/L (OD 600 : 56.1) and SA titer of 22.3 g/L with a gradual decrease in pH below 4.0. Acetic acid was obtained as a main byproduct in all the fermentations. Conclusion : The recombinant strain displayed potential for bioconversion of xylose to SA. Further, this study provided a new insight on conversion of lignocellulosic biomass into value-added products. To the best of our knowledge, this is the first study on SA production by Y. lipolytica using xylose as a sole carbon source.

Design of a Synthetic Enzyme Cascade for the in vitro Fixation of a C1 Carbon Source to a Functional C4 Sugar

2021 ◽  
Author(s):  
Samed Güner ◽  
Vanessa Wegat ◽  
André Pick ◽  
Volker Sieber
Keyword(s):  
Carbon Dioxide ◽  
Carbon Source ◽  
Greenhouse Gas ◽  
Value Added ◽  
Waste Stream ◽  
Enzyme Cascade ◽  
Sustainable Future ◽  
Value Added Products

Realizing a sustainable future requires intensifying the waste stream conversion, such as converting the greenhouse gas carbon dioxide into value-added products. In this paper, we focus on utilizing formaldehyde as...

scholarly journals A Single Chromosome Strain of S. cerevisiae Exhibits Diminished Ethanol Metabolism and Tolerance

2020 ◽  
Author(s):  
Tyler W. Doughty ◽  
Rosemary Yu ◽  
Lucy Fang-I Chao ◽  
Zhongjun Qin ◽  
Verena Siewers ◽  
...  
Keyword(s):  
Carbon Source ◽  
Reference Strain ◽  
Biomass Concentration ◽  
Biomass Accumulation ◽  
Ethanol Metabolism ◽  
Large Chromosome ◽  
Lag Phase ◽  
Diauxic Shift ◽  
Single Chromosome ◽  
Genome Arrangement

AbstractThis study characterized the growth, metabolism, and transcriptional profile of a S. cerevisiae strain with a single large chromosome that was constructed via successive chromosomal fusions. The single chromosome strain exhibited a longer lag phase, increased doubling time, and lower final biomass concentration compared with a wildtype strain when grown on YPD. These phenotypes were amplified when ethanol was added to the medium or used as the sole carbon source. RNAseq analysis showed diminished induction of genes involved in diauxic shift, ethanol metabolism, fatty-acid ß-oxidation, and methylglyoxal catabolism during growth on ethanol compared to the reference strain. Enzyme-constrained metabolic modeling predicted that decreased flux through these poorly induced enzymes results in diminished ATP formation and decreased biomass accumulation observed. Together, these observations suggest that switch-like control of carbon source dependent gene expression in S. cerevisiae requires genome arrangement into multiple chromosomes.

scholarly journals Biosynthesis of Polyhydroxyalkanoate Terpolymer from Methanol via the Reverse β-Oxidation Pathway in the Presence of Lanthanide

2022 ◽  
Vol 10 (1) ◽  
pp. 184
Author(s):  
Izumi Orita ◽  
Gento Unno ◽  
Risa Kato ◽  
Toshiaki Fukui
Keyword(s):  
Carbon Source ◽  
Sole Carbon Source ◽  
Ralstonia Eutropha ◽  
Negative Impact ◽  
Value Added ◽  
Pha Synthase ◽  
Growth Impairment ◽  
Oxidation Pathway ◽  
Methylotrophic Growth ◽  
Value Added Products

Methylorubrum extorquens AM1 is the attractive platform for the production of value-added products from methanol. We previously demonstrated that M. extorquens equipped with PHA synthase with broad substrate specificity synthesized polyhydroxyalkanoates (PHAs) composed of (R)-3-hydroxybutyrate and small fraction of (R)-3-hydroxyvalerate (3HV) and (R)-3-hydroxyhexanoate (3HHx) units on methanol. This study further engineered M. extorquens for biosynthesis of PHAs with higher 3HV and 3HHx composition focusing on the EMC pathway involved in C1 assimilation. The introduction of ethylmalonyl-CoA decarboxylase, catalyzing a backward reaction in the EMC pathway, aiming to increase intracellular propionyl/butyryl-CoA precursors did not affect PHA composition. Reverse b-oxidation pathway and subsequent (R)-specific hydration of 2-enoyl-CoA were then enhanced by heterologous expression of four genes derived from Ralstonia eutropha for the conversion of propionyl/butyryl-CoAs to the corresponding (R)-3-hydroxyacyl-CoA monomers. The resulting strains produced PHAs with higher 3HV and 3HHx compositions, while the methylotrophic growth was severely impaired. This growth impairment was interestingly restored by the addition of La3+ without a negative impact on PHA biosynthesis, suggesting the activation of the EMC pathway by La3+. The engineered M. extorquens synthesized PHA terpolymer composed of 5.4 mol% 3HV and 0.9% of 3HHx with 41% content from methanol as a sole carbon source in the presence of La3+.

Antarctic marine primary production, biogeochemical carbon cycles and climatic change

1992 ◽  
Vol 338 (1285) ◽  
pp. 289-297 ◽  
Keyword(s):  
Climate Change ◽  
Southern Ocean ◽  
Primary Production ◽  
Climatic Change ◽  
Carbon Fixation ◽  
Algal Growth ◽  
Ice Cover ◽  
Phytoplankton Production ◽  
Numerical Predictions ◽  
Model Predictions

In the Southern Ocean, inorganic macronutrients are very rarely depleted by phytoplankton growth. This has led to speculation on possible additional CO 2 drawdown in this region. However, the effects of climate change can only be predicted once the role of environmental and biotic factors limiting phytoplankton carbon fixation are understood. It is clear that the Southern Ocean is heterogeneous, and no single factor controls prim ary production overall. Ice cover and vertical mixing influence algal growth rates by m odulating radiance flux. Micronutrients, especially iron, may limit growth in some areas. Primary production is also suppressed by high removal rates of algal biomass. Grazing by zooplankton is the major factor determining magnitude and quality of vertical particle flux. Several of the physical controls on phytoplankton production are sensitive to climate change. Although it is impossible to make numerical predictions of future change on the basis of our present knowledge, qualitative assessments can be put forward on the basis of model predictions of climate change and known factors controlling prim ary production. Changes in water temperature and in windinduced mixing are likely to be slight and have little effect. Model predictions of changes in sea-ice cover vary widely, making prediction of biogeochemical effects impossible. Even if climatic change induces increased nutrient uptake, there are several reasons to suspect that carbon sequestration will be ineffective in comparison with continuing anthropogenic CO 2 emission.

scholarly journals A 40-million-year history of atmospheric CO 2

2013 ◽  
Vol 371 (2001) ◽  
pp. 20130096 ◽  
Author(s):  
Yi Ge Zhang ◽  
Mark Pagani ◽  
Zhonghui Liu ◽  
Steven M. Bohaty ◽  
Robert DeConto
Keyword(s):  
Middle Miocene ◽  
Carbon Fixation ◽  
Middle Eocene ◽  
Ice Sheet ◽  
Algal Growth ◽  
Equatorial Atlantic ◽  
Antarctic Ice Sheet ◽  
The Past ◽  
Wide Range

The alkenone– p CO 2 methodology has been used to reconstruct the partial pressure of ancient atmospheric carbon dioxide ( p CO 2 ) for the past 45 million years of Earth's history (Middle Eocene to Pleistocene epochs). The present long-term CO 2 record is a composite of data from multiple ocean localities that express a wide range of oceanographic and algal growth conditions that potentially bias CO 2 results. In this study, we present a p CO 2 record spanning the past 40 million years from a single marine locality, Ocean Drilling Program Site 925 located in the western equatorial Atlantic Ocean. The trends and absolute values of our new CO 2 record site are broadly consistent with previously published multi-site alkenone–CO 2 results. However, new p CO 2 estimates for the Middle Miocene are notably higher than published records, with average p CO 2 concentrations in the range of 400–500 ppm. Our results are generally consistent with recent p CO 2 estimates based on boron isotope-pH data and stomatal index records, and suggest that CO 2 levels were highest during a period of global warmth associated with the Middle Miocene Climatic Optimum (17–14 million years ago, Ma), followed by a decline in CO 2 during the Middle Miocene Climate Transition (approx. 14 Ma). Several relationships remain contrary to expectations. For example, benthic foraminiferal δ 18 O records suggest a period of deglaciation and/or high-latitude warming during the latest Oligocene (27–23 Ma) that, based on our results, occurred concurrently with a long-term decrease in CO 2 levels. Additionally, a large positive δ 18 O excursion near the Oligocene–Miocene boundary (the Mi-1 event, approx. 23 Ma), assumed to represent a period of glacial advance and retreat on Antarctica, is difficult to explain by our CO 2 record alone given what is known of Antarctic ice sheet history and the strong hysteresis of the East Antarctic Ice Sheet once it has grown to continental dimensions. We also demonstrate that in the Neogene with low CO 2 levels, algal carbon concentrating mechanisms and spontaneous biocarbonate–CO 2 conversions are likely to play a more important role in algal carbon fixation, which provides a potential bias to the alkenone– p CO 2 method.

Research on the Isolation, Identification and Degradation Characteristics of a Diesel Oil Degrading Strain

2013 ◽  
Vol 641-642 ◽  
pp. 206-210 ◽  
Author(s):  
Lei Huang ◽  
Jing Xie ◽  
Xiao Feng Shi ◽  
Jing Yan Lian
Keyword(s):  
Carbon Source ◽  
Yeast Extract ◽  
Contaminated Soils ◽  
Biomass Concentration ◽  
Diesel Oil ◽  
Artificial Seawater ◽  
Oil Field ◽  
Optimal Concentration ◽  
Optimal Temperature

A hydrocarbon-degrading strain ZRS was isolated from petroleum-contaminated soils sampled from Xinjiang oil field and identified as Acinetobacter beijerinckii, which could use diesel oil as solo carbon source. The optimal temperature and pH for strain utilizing ethanol was 25°C and 7.2; the optimal concentration of ethanol and the biomass concentration was 4.5% and 109 CFU/mL, respectively. Inoculated to artificial seawater which added (NH4)2SO4 2.64g/L、Na2HPO4 1.5 g/L and yeast extract 13 mg/L after 7 days of culture at temperature 25°C, the rate of degradation was 73.9％.

scholarly journals Toxic Effect of Antibiotics on Freshwater Algal Systems and the Mechanisms of Toxicity: A Review

2021 ◽  
Vol 20 (4) ◽  
Author(s):  
Barsha Roy ◽  
P. K. Suresh
Keyword(s):  
Bacterial Infections ◽  
Carbon Fixation ◽  
Real Life ◽  
Algal Growth ◽  
Mixture Toxicity ◽  
Resistant Bacteria ◽  
Growth Promoter ◽  
Freshwater Environment ◽  
Antibiotic Resistant ◽  
Mechanisms Of Toxicity

Antibiotics are used to treat bacterial infections in humans and animals and also act as a growth promoter for poultry. Due to incomplete metabolism, these antibiotics are excreted in the environment in their parental forms and accumulates in the aquatic ecosystem. Besides the evolution of antibiotic-resistant bacteria, these drugs can damage non-target organisms. Green algae are highly sensitive to different antibiotics. Damage in the algal population will cause imbalances in the ecosystems. Till now, the mechanisms of antibiotic toxicity towards algae have not been completely elucidated. It was observed that antibiotics mainly affected the photosynthetic machinery and decreased the carbon fixation process, finally resulting in algal growth inhibition. This present review deals with antibiotics classification, various routes of antibiotics exposure to the freshwater environment, sensitivity towards the different classes of antibiotics, possible Mode-of-Action (MOA) on algal systems, and gaps that need to be filled. Significant gaps include the unavailability of proper eco-toxicological data for antibiotics. Moreover, they exist in nature as complex mixtures, and their behavior in the ecosystem may vastly differ from the parent molecules. To improve our understanding of antibiotic responses mechanism in real-life scenarios, mixture toxicity studies may be the first step.

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