scholarly journals Genome-wide and cuticular hydrocarbon evidence shed light on potential drivers of speciation in a Neotropical ant species complex

2021 ◽  
Author(s):  
Rubi Meza-Lázaro ◽  
Kenzy Peña-Carrillo ◽  
Chantal Poteaux ◽  
Maria Lorenzi ◽  
James Wetterer ◽  
...  
Keyword(s):  
Species Complex ◽  
Sequence Data ◽  
Cuticular Hydrocarbon ◽  
Distinct Species ◽  
Species Limits ◽  
Geographic Barriers ◽  
Genome Wide ◽  
Mtdna Sequence ◽  
Mating Signal ◽  
Southeast Mexico

Reproductive isolation between geographically separated populations is generally considered the most common form of speciation. However, speciation may also occur in the absence of geographic barriers due phenotypic and genotypic factors such as chemical cue divergence, mating signal divergence and mitonuclear conflict. Here we performed an integrative study based on two genome-wide techniques, 3RAD and ultraconserved elements, coupled with cuticular hydrocarbon and mtDNA sequence data, to assess the species limits within the E. ruidum species-complex, a widespread and conspicuous group of Neotropical ants for which heteroplasmy has been recently discovered in some populations from southeast Mexico. Our analyses indicate the existence of at least five distinct species in this complex, two widely distributed along the Neotropics and three that are restricted to southeast Mexico and that apparently have high levels of heteroplasmy. We found that species boundaries in the complex did not coincide with geographic barriers. We therefore consider possible roles of alternative drivers that may have promoted the observed patterns of speciation, including mitonuclear incompatibility, cuticular hydrocarbon differentiation, and colony structure. Our study highlights the importance of simultaneously assessing different sources of evidence to disentangle the species limits of taxa with complicated evolutionary histories.

Relationships of scincid lizards (Mabuya spp.) from the islands of the Gulf of Guinea based on mtDNA sequence data

2005 ◽  
Vol 26 (4) ◽  
pp. 467-473 ◽  
Author(s):  
José Jesus ◽  
D. James Harris ◽  
António Brehm
Keyword(s):  
16S Rrna ◽  
Species Complex ◽  
Sequence Data ◽  
Mitochondrial Gene ◽  
12S Rrna ◽  
Gulf Of Guinea ◽  
Recent Proposal ◽  
Genetic Lineages ◽  
Sao Tome And Principe ◽  
Mtdna Sequence

AbstractRelationships of Mabuya lizards from the islands of the Gulf of Guinea where estimated using partial 12S rRNA, 16S rRNA and cytochrome b mitochondrial gene sequences. Mabuya maculilabris from São Tomé and Principe are discreet monophyletic units, highly divergent from each other and from mainland populations, indicating M. maculilabris may be a species complex. Mabuya affinis from Principe is similarly distinct from mainland populations of this species. The relationships of Mabuya ozorii from Annobon are unclear, but the three species in the Gulf of Guinea islands are not closely related, indicating multiple independent colonization events. The recent proposal to partition Mabuya into four genera is premature, since at least five distinct genetic lineages can be identified.

scholarly journals Veterinary Fusarioses within the United States

2016 ◽  
Vol 54 (11) ◽  
pp. 2813-2819 ◽  
Author(s):  
Kerry O'Donnell ◽  
Deanna A. Sutton ◽  
Nathan Wiederhold ◽  
Vincent A. R. G. Robert ◽  
Pedro W. Crous ◽  
...  
Keyword(s):  
United States ◽  
Dna Sequence ◽  
Species Complex ◽  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Distinct Species ◽  
The United States ◽  
Content Type ◽  
Dna Sequence Data ◽  
Species Complexes

Multilocus DNA sequence data were used to assess the genetic diversity and evolutionary relationships of 67Fusariumstrains from veterinary sources, most of which were from the United States. Molecular phylogenetic analyses revealed that the strains comprised 23 phylogenetically distinct species, all but two of which were previously known to infect humans, distributed among eight species complexes. The majority of the veterinary isolates (47/67 = 70.1%) were nested within theFusarium solanispecies complex (FSSC), and these included 8 phylospecies and 33 unique 3-locus sequence types (STs). Three of the FSSC species (Fusarium falciforme,Fusarium keratoplasticum, andFusariumsp. FSSC 12) accounted for four-fifths of the veterinary strains (38/47) and STs (27/33) within this clade. Most of theF. falciformestrains (12/15) were recovered from equine keratitis infections; however, strains ofF. keratoplasticumandFusariumsp. FSSC 12 were mostly (25/27) isolated from marine vertebrates and invertebrates. Our sampling suggests that theFusarium incarnatum-equisetispecies complex (FIESC), with eight mycoses-associated species, may represent the second most important clade of veterinary relevance withinFusarium. Six of the multilocus STs within the FSSC (3+4-eee, 1-b, 12-a, 12-b, 12-f, and 12-h) and one each within the FIESC (1-a) and theFusarium oxysporumspecies complex (ST-33) were widespread geographically, including three STs with transoceanic disjunctions. In conclusion, fusaria associated with veterinary mycoses are phylogenetically diverse and typically can only be identified to the species level using DNA sequence data from portions of one or more informative genes.

Molecular systematics of Australian rhinolophid bats (Chiroptera : Rhinolophidae)

1998 ◽  
Vol 46 (3) ◽  
pp. 203 ◽  
Author(s):  
S. J. B. Cooper ◽  
T. B. Reardon ◽  
J. Skilins
Keyword(s):  
Sequence Data ◽  
Phylogenetic Analyses ◽  
Taxonomic Status ◽  
Distinct Species ◽  
Surprising Result ◽  
Separate Species ◽  
Phylogenetic Species Concept ◽  
South Wales ◽  
Mtdna Sequence ◽  
Geographic Populations

Genetic variation in two morphologically distinct species of Australian Rhinolophus, R. megaphyllus, and R. philippinensis, and a third putative species (‘the intermediate’) were examined using allozyme electrophoresis and sequencing of the mitochondrial DNA (mtDNA) control region with the aim of resolving their taxonomic status. The surprising result was that no fixed allozymic differences and low allozyme divergence existed among these three taxa over 45 loci examined. In contrast, levels of intra-generic divergence among eight species of Rhinolophus showed up to 50% fixed allozyme differences between species, indicating that low allozyme divergence was not a common feature of the genus and that the three Australian taxa are likely to be monophyletic and recently diverged. Phylogenetic analyses of mtDNA sequence data revealed that populations of R. megaphyllus and R. philippinensis from Sabah, New Guinea, and Australia were represented by distinct mtDNA clades and that the two species are polyphyletic. These data suggest a reclassification of the different geographic populations of R. megaphyllus and R. philippinensis as separate species on the basis of a phylogenetic species concept. Within Australia, three distinct mtDNA clades were found, one of which showed ‘the intermediate’ in paraphyly with R. philippinensis from Queensland, but does not resolve the taxonomic status of ‘the intermediate’. Two mtDNA clades were also found representing R. megaphyllus from Queensland and R. megaphyllus from Victoria and New South Wales respectively. The finding of genetic subdivision along the east coast of Australia in an apparently continuously distributed bat species raises questions of the origin and historical biogeography of these bats in Australia.

A new species of Colletotrichum from Sonchus sp. in Italy

Phytotaxa ◽  
2017 ◽  
Vol 314 (1) ◽  
pp. 55 ◽  
Author(s):  
RUVISHIKA S. JAYAWARDENA ◽  
ERIO CAMPORESI ◽  
ABDALLAH M. ELGORBAN ◽  
ALI H. BAHKALI ◽  
JIYE YAN ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Species Complex ◽  
Sequence Data ◽  
Distinct Species ◽  
First Record ◽  
Molecular Data ◽  
Colletotrichum Species ◽  
Morphological And Molecular Data ◽  
A New Species

Colletotrichum sonchicola, sp. nov. from Sonchus sp. (dandelion tribe) in Forlì-Cesena Province, Italy, is introduced using morphological and molecular data. Combined phylogenetic analysis of ITS, GAPDH, CHS, ACT and TUB2 sequence data demonstrate that C. sonchicola is a distinct species within the dematium species complex. The new species is illustrated and compared with related taxa. This provides the first record of a Colletotrichum species from the genus Sonchus.

Re-evaluation of species limits in the genus Atlapetes based on mtDNA sequence data

Ibis ◽  
2008 ◽  
Vol 141 (2) ◽  
pp. 199-207 ◽  
Author(s):  
Jaime Garcia-Moreno ◽  
Jon Fjeldså
Keyword(s):  
Sequence Data ◽  
Species Limits ◽  
Mtdna Sequence

Multigene phylogenetic characterisation of Colletotrichum artocarpicola sp. nov. from Artocarpus heterophyllus in northern Thailand

Phytotaxa ◽  
2019 ◽  
Vol 418 (3) ◽  
pp. 273-286 ◽  
Author(s):  
CHITRABHANU S. BHUNJUN ◽  
RUVISHIKA S. JAYAWARDENA ◽  
DE-PING WEI ◽  
NARUEMON HUANRALUEK ◽  
PRANAMI D. ABEYWICKRAMA ◽  
...  
Keyword(s):  
Phylogenetic Analysis ◽  
New Species ◽  
Species Complex ◽  
Sequence Data ◽  
Distinct Species ◽  
Northern Thailand ◽  
Artocarpus Heterophyllus ◽  
Molecular Approaches ◽  
A New Species

A new species, Colletotrichum artocarpicola, on Artocarpus heterophyllus from Chiang Rai, Thailand, is introduced using both morphological and molecular approaches. Combined phylogenetic analysis of ITS, GAPDH, CHS-1, ACT and TUB2 sequence data demonstrate that Colletotrichum artocarpicola is a distinct species within the gloeosporioides species complex. The new species is illustrated and compared with related taxa, and evidence of its pathogenicity is provided.

scholarly journals Phyllachora species infecting maize and other grass species throughout the Americas represents a complex of closely related species which vary in their host and geographic range

2021 ◽  
Author(s):  
Kirk Broders ◽  
Gloria Iriarte ◽  
Gary Bergstrom ◽  
Emmanuel Byamukama ◽  
Martin Chilvers ◽  
...  
Keyword(s):  
Species Complex ◽  
Sequence Data ◽  
Distinct Species ◽  
The United States ◽  
Grass Species ◽  
Bootstrap Support ◽  
Herbarium Specimens ◽  
Tar Spot ◽  
Strong Bootstrap Support ◽  
Grass Hosts

The genus Phyllachora contains numerous obligate fungal parasites that produce raised, melanized structures called stromata on their plant hosts referred to as tar spot. Members of this genus are known to infect many grass species but generally do not cause significant damage or defoliation, with the exception of P. maydis which has emerged as an important pathogen of maize throughout the Americas, but the origin of this pathogen remains unknown. To date, species designations for Phyllachora have been based on host associations and morphology, and most species are assumed to be host specific. We assessed the sequence diversity of 186 single stroma isolates collected from 16 hosts representing 15 countries. Samples included both herbarium and contemporary strains that covered a temporal range from 1905-2019. These 186 isolates were grouped into 5 distinct species with strong bootstrap support. We found three closely related, but genetically distinct groups of Phyllachora are capable of infecting maize in the United States, we refer to these as the P. maydis species complex. Based on herbarium species, we hypothesize that these three groups in the P. maydis species complex originated from Central America, Mexico and the Caribbean. Although two of these groups were only found on maize, the third and largest group contained contemporary strains found on maize and other grass hosts, as well as herbarium specimens from maize and other grasses that include 10 species of Phyllachora. The herbarium specimens were identified based on morphology and host association, but our sequence data indicates some Phyllachora species are capable of infecting a broad range of host species and there may be significant synonymy in the Phyllachora genus and additional work on species delineation and host specificity should be considered.

Subterranean archipelago: mitochondrial DNA phylogeography of stygobitic isopods (Oniscidea:Haloniscus) from the Yilgarn region of Western Australia

2008 ◽  
Vol 22 (2) ◽  
pp. 195 ◽  
Author(s):  
Steven J. B. Cooper ◽  
Kathleen M. Saint ◽  
Stefano Taiti ◽  
Andrew D. Austin ◽  
William F. Humphreys
Keyword(s):  
Mitochondrial Dna ◽  
Western Australia ◽  
Sequence Data ◽  
Strong Support ◽  
Distinct Species ◽  
Phylogeographic Structure ◽  
Morphological Studies ◽  
Mtdna Sequence ◽  
Mtdna Lineages ◽  
High Level

The arid Yilgarn region of Western Australia contains numerous isolated calcrete aquifers, within which a diverse subterranean fauna has been discovered. Genetic and morphological studies of subterranean dytiscid beetles and amphipods have suggested that individual calcretes are equivalent to closed island habitats, which have been isolated for millions of years. Here we test this ‘subterranean island’ hypothesis further by phylogeographic analyses of subterranean oniscidean isopods (Haloniscus), using mitochondrial DNA (mtDNA) sequence data derived from the cytochrome c oxidase subunit I gene. Phylogenetic and population genetic analyses provided evidence for significant phylogeographic structuring of isopod populations, with evidence for at least 24 divergent mtDNA lineages, each restricted in their distribution to a single calcrete aquifer. The high level of divergence among calcrete populations (generally >25%) and several mtDNA lineages within calcretes (>16%) suggests that each lineage is likely to represent a distinct species. These analyses, together with comparative phylogeographic data from dytiscid beetles and amphipods, provide strong support for the ‘subterranean island’ hypothesis, applying to both air-breathing and fully aquatic arthropod groups. The finding of several epigean lineages that grouped with stygobitic Haloniscus populations, and the overall phylogeographic structure of populations, suggests that the majority of stygobitic species evolved within individual calcretes following independent colonisation by epigean ancestors.

scholarly journals PSI-40 Two mitochondrial lineages revealed in North American yak

2020 ◽  
Vol 98 (Supplement_4) ◽  
pp. 477-477
Author(s):  
Leah K Treffer ◽  
Edward S Rice ◽  
Anna M Fuller ◽  
Samuel Cutler ◽  
Jessica L Petersen
Keyword(s):  
Sequence Data ◽  
Haplotype Network ◽  
Ovis Aries ◽  
Similar Species ◽  
Nucleotide Polymorphisms ◽  
Mt Dna ◽  
Protein Coding ◽  
Sister Clade ◽  
Mtdna Sequence ◽  
The Impact

Abstract Domestic yak (Bos grunniens) are bovids native to the Asian Qinghai-Tibetan Plateau. Studies of Asian yak have revealed that introgression with domestic cattle has contributed to the evolution of the species. When imported to North America (NA), some hybridization with B. taurus did occur. The objective of this study was to use mitochondrial (mt) DNA sequence data to better understand the mtDNA origin of NA yak and their relationship to Asian yak and related species. The complete mtDNA sequence of 14 individuals (12 NA yak, 1 Tibetan yak, 1 Tibetan B. indicus) was generated and compared with sequences of similar species from GeneBank (B. indicus, B. grunniens (Chinese), B. taurus, B. gaurus, B. primigenius, B. frontalis, Bison bison, and Ovis aries). Individuals were aligned to the B. grunniens reference genome (ARS_UNL_BGru_maternal_1.0), which was also included in the analyses. The mtDNA genes were annotated using the ARS-UCD1.2 cattle sequence as a reference. Ten unique NA yak haplotypes were identified, which a haplotype network separated into two clusters. Variation among the NA haplotypes included 93 nonsynonymous single nucleotide polymorphisms. A maximum likelihood tree including all taxa was made using IQtree after the data were partitioned into twenty-two subgroups using PartitionFinder2. Notably, six NA yak haplotypes formed a clade with B. indicus; the other four haplotypes grouped with B. grunniens and fell as a sister clade to bison, gaur and gayal. These data demonstrate two mitochondrial origins of NA yak with genetic variation in protein coding genes. Although these data suggest yak introgression with B. indicus, it appears to date prior to importation into NA. In addition to contributing to our understanding of the species history, these results suggest the two major mtDNA haplotypes in NA yak may functionally differ. Characterization of the impact of these differences on cellular function is currently underway.

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