scholarly journals TANAMAN INDIKATOR DAN TEKNIK RAPD-PCR UNTUK PENENTUAN BIOTIPE BEMISIA TABACI GENNADIUS (HEMIPTERA: ALEYRODIDAE)

2011 ◽  
Vol 8 (1) ◽  
pp. 1-7
Author(s):  
Purnama Hidayat ◽  
Noor Aidawati ◽  
Sri Hendrastuti Hidayat ◽  
Dewi Sartiami
Keyword(s):  
Genetic Diversity ◽  
Bemisia Tabaci ◽  
Virus Vector ◽  
Indicator Plant ◽  
Chilli Pepper ◽  
Genetic Types ◽  
Rapd Pcr ◽  
Major Pest ◽  
Biotype B

Indicator Plant and PCR-RAPD for Biotype Determination of Bemisia tabaci Gennadius (Hemiptera: Aleyrodidae).B. tabaci has been known world wide as a major pest and virus vector of horticulture. In Indonesia the presence of B.tabaci was reported since 1980 and its role as virus vector in tomato and chilli pepper has becoming more importantrecently. Genetic diversity of B. tabaci has been well recognized, but very little information available for diversity of B.tabaci in Indonesia. This research was conducted in Bogor, West Java from May 2004 to June 2005. The aim of thisresearch was to initiate basic information regarding genetic diversity of B. tabaci in Indonesia, particularly in Java Island.Whiteflies population collected from different crops, i.e. tomato, broccoli, chill pepper, eggplant, cucumber, soybean, andedamame, was evaluated using silverleaf-induction test, and RAPD-PCR. It was evidenced that only B. tabaci populationfrom broccoli was able to induce silverleaf. Two genetic types of B. tabaci, i.e. biotype B and non B, were identified basedon polymorphism character of DNA. Population from broccoli was belong to biotype B, whereas other populations fromtomato, chill pepper, eggplant, cucumber, soybean, and edamame were belong to biotype non B.

Biotype determination of Spanish populations of Bemisia tabaci (Hemiptera: Aleyrodidae)

1997 ◽  
Vol 87 (6) ◽  
pp. 587-593 ◽  
Author(s):  
P. Guirao ◽  
F. Beitia ◽  
J. L. Cenis
Keyword(s):  
Bemisia Tabaci ◽  
Balearic Islands ◽  
Genetic Types ◽  
Esterase Pattern ◽  
Rapd Pcr ◽  
The World ◽  
Spanish Populations ◽  
B Biotype ◽  
Esterase Patterns

AbstractA survey was made to assess the biotype status of populations of the whitefly Bemisia tabaci (Gennadius) in Spain. The study involved observation of the squash silverleaf reaction, analysis of esterase patterns and application of a RAPD-PCR technique. The results obtained by the three methods were fully consistent and showed that the Spanish populations of B. tabaci were composed of two genetic types. One corresponded to populations of the B biotype, found in Tenerife (Canary Islands), Barcelona, Madrid, Malaga and Almeria. The other, showing a unique RAPD and esterase pattern, was found in Majorca (Balearic Islands), Seville, Valencia, Murcia and Almeria, as well as in the Algarve Region of Portugal. RAPD patterns of other populations from the rest of the world used for comparison showed that populations from Arizona (USA), Israel, France, Denmark, Italy, Netherlands and Japan have similar RAPD patterns typical of the B biotype. By contrast, populations from the Iberian Peninsula, Turkey, India, Pakistan and Arizona (A biotype), showed different and unique patterns.

A new silverleaf-inducing biotype Ms of Bemisia tabaci (Hemiptera: Aleyrodidae) indigenous to the islands of the south-west Indian Ocean

2005 ◽  
Vol 95 (1) ◽  
pp. 29-35 ◽  
Author(s):  
H. Delatte ◽  
B. Reynaud ◽  
M. Granier ◽  
L. Thornary ◽  
J.M. Lett ◽  
...  
Keyword(s):  
Bemisia Tabaci ◽  
Distinct Group ◽  
Genetic Type ◽  
Coi Gene ◽  
Vegetable Crops ◽  
Sequence Comparisons ◽  
Genetic Types ◽  
South West Indian Ocean ◽  
Biotype B ◽  
Q Biotype

AbstractFollowing the first detection of tomato yellow leaf curl virus (TYLCV) from R=union (700 km east of Madagascar) in 1997 and the upsurge of Bemisia tabaci (Gennadius) on vegetable crops, two genetic types of B. tabaci were distinguished using RAPD–PCR and cytochrome oxidase I (COI) gene sequence comparisons. One type was assigned to biotype B and the other was genetically dissimilar to the populations described elsewhere and was named Ms, after the Mascarenes Archipelago. This new genetic type forms a distinct group that is sister to two other groups, one to which the B biotype is a member and one to which the Q biotype belongs. The Ms biotype is thought to be indigenous to the region as it was also detected in Mauritius, the Seychelles and Madagascar. Both B and Ms populations of B. tabaci induced silverleaf symptoms on Cucurbita sp., and were able to acquire and transmit TYLCV. Taken together these results indicate that the Ms genetic type should be considered a new biotype of B. tabaci.

Analysis of genetic diversity among different geographical populations and determination of biotypes of Bemisia tabaci in China

2005 ◽  
Vol 129 (3) ◽  
pp. 121-128 ◽  
Author(s):  
L. P. Zhang ◽  
Y. J. Zhang ◽  
W. J. Zhang ◽  
Q. J. Wu ◽  
B. Y. Xu ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Bemisia Tabaci ◽  
Geographical Populations

scholarly journals Determination of Genetic Diversity of Four Guppy Strains Using the Random Amplified Polymorphic DNA-PCR

2021 ◽  
pp. 1-8
Author(s):  
Riva Hafidah ◽  
Ayi Yustiati ◽  
Yuniar Mulyani ◽  
Ibnu Bangkit Bioshina Suryadi
Keyword(s):  
Genetic Diversity ◽  
Random Amplified Polymorphic Dna ◽  
Descriptive Analysis ◽  
Similarity Index ◽  
Quantitative Descriptive Analysis ◽  
Rapd Pcr ◽  
Result Show ◽  
Pcr Method ◽  
Quantitative Descriptive

This research aims to determine genetic diversity of four strains guppy, respectively are japan blue double sword (JBD), japan blue tiger double sword (JBTD), blue moscow (BM), and panda guppy (PG) with RAPD-PCR method. The obtained genetic diversity data is used as guide reference for hybridization between four strains. The research was conducted in September 2020 to April 2021 with explorative methods and in qualitative and quantitative descriptive analysis. The research was carried out in biotechnology Laboratory, Fishery and Marine Sciences Faculty and Central Laboratory,Padjadjaran University, Indonesia.Strains of JBD, JBTD, BM obtained fromCilengkrangSubdistrict, Bandung and PG strain obtained from Parung market, Bogor. Primary OPA-03 (AGTCAGCCAC) is used for standard parameters to interpret genetic diversity among four strains of guppy. Based on results, amplification with OPA-03 primary visualize 25 bands that include five polymorphic bands and 20 monomorphic bands. The phylogenetic tree result show that there are two relationship groups. The first group are JBD, JBTD, and BM with similarity index in the range of 80-89%The first group consist two sub groups of relationship. The first sub group are JBD and JBTD with similarity index of 89%. The second sub group is BM with similarity index of 80%. The second group isPG with similarity index of 65.5%.

scholarly journals Antibacterial Effects of Octenidine Dihydrochloride, and Benzalkanium Chloride on Acinetobacter Baumannii Strains Isolated from Clinical Samples and Determination of Genetic Diversity of Isolates by RAPD-PCR Method

2021 ◽  
Author(s):  
Azar Dokht Khosravi ◽  
Effat Abasi Montazeri ◽  
Seyedeh Roya Maki
Keyword(s):  
Genetic Diversity ◽  
Acinetobacter Baumannii ◽  
Clinical Samples ◽  
Biochemical Tests ◽  
Typing Method ◽  
Conventional Culture ◽  
Rapd Pcr ◽  
Octenidine Dihydrochloride ◽  
Pcr Method

Abstract Due to the emergence of antibiotic resistance in Acinetobacter baumannii which is one of the important causes of nosocomial infections, many problems have been raised in the successful treatment of patients with the subsequent mortality. So, the present study was performed to evaluate the antibacterial effect of Actinidine dehydrochloride, Actinisept, and Benzalkanium chloride against Acinetobacter baumannii strains isolated from clinical samples and to determine the genetic diversity of strains by RAPD-PCR. A total of 119 non-duplicate, suspected Acinetobacter baumannii isolates were collected and confirmed by conventional culture and biochemical tests and PCR technique. Susceptibility of the isolates to antibiotics was evaluated by standard Antibiotic susceptibility testing (AST). For antiseptics Octenidine dihydrochloride (OCT), Actinisept, and Benzalkonium chloride (BZK), Minimal inhibitory concentration (MIC) was assessed. The prevalence of Qac E and Qac delta E genes related to antiseptics was estimated by PCR. Finally, genetic diversity of strains was determined by RAPD-PCR. All 119 suspected isolates were confirmed as Acinetobacter baumannii using conventional tests and PCR. The isolates were mostly originated from blood samples. In AST, the lowest resistance was seen for ciprofloxacin and gentamicin. The MIC values were reported as OCT (15.26 µg) and BZK (640 µg). The antiseptic genes of qacE and qac ΔE1 were found to be present in 56 (47.05%) and 59 (49.57%) of isolates respectively. RAPD typing method revealed great diversity among A. baumannii isolates, with 37 clusters in isolates from ICU, of which 32 isolates were single and 5 were multiple. In conclusion, considering the increase of resistance to antiseptics, it is of importance to monitor the susceptibility of A. baumannii to antiseptics and to promote antiseptic stewardship in hospitals. Furthermore, in this study great diversity among A. baumannii was observed making it difficult to properly carry out infection control policies. analysis of RAPD-PCR typing results, and we found 37 clusters, among them 32 isolates were single and 5 were multiple. So, the method generated 37 RAPD type which shows great diversity among 57 out of 62 A. baumannii isolates at 80% cutoff.

scholarly journals Identification, geographical distribution and host plants of Bemisia tabaci (Genn.) biotypes (Homoptera: Aleyrodidae) in the State of Paraná, Brazil

2000 ◽  
Vol 29 (3) ◽  
pp. 597-603 ◽  
Author(s):  
Sueli S. Martinez ◽  
Alfredo O. R. de Carvalho ◽  
Luiz G. Vieira ◽  
Liliane M. Nunes ◽  
Anésio Bianchini
Keyword(s):  
Geographical Distribution ◽  
Bemisia Tabaci ◽  
Banding Pattern ◽  
Host Plants ◽  
Ornamental Plants ◽  
The State ◽  
The North ◽  
Rapd Pcr ◽  
Biotype B

This work was carried out in order to identify Bemisia tabaci (Genn.) biotypes present in the state of Paraná and to determine their geographical distribution and host plants. About 50 adults were collected in several host crops, weeds and ornamental plants in North, Northwest, Northeast, West and Central areas of the state, from January to May, 1998 and 1999. The species were identified by means of RAPD-PCR, using the primer Operon H-16. Whitefly populations were detected mainly from February on, in both years, seldom achieving more than one adult per leaf. The insect was found in only 66% of the sampled areas. Bean golden mosaic was almost never observed during the period. Both biotype A and biotype B of B. tabaci were found in the State of Paraná, the last one being more restricted to the north region. Although biotype B was found colonising a wider range of host plants, it has not spread out in all the state and most of the whitefly specimens found are still the biotype A. A banding pattern distinct of those obtained for A and biotype B of B. tabaci was obtained exclusively with the populations collected from cassava, thus indicating the possible presence of a biotype specific for this crop.

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