Biodegradation of cyanide by Rhodococcus UKMP-5M

Biologia ◽  
2013 ◽  
Vol 68 (2) ◽  
Author(s):  
Maegala Nallapan Maniyam ◽  
Fridelina Sjahrir ◽  
Abdul Ibrahim ◽  
Anthony Cass
Keyword(s):  
Contaminated Soils ◽  
Nitrile Hydratase ◽  
Sole Source ◽  
Optimum Conditions ◽  
Carbon And Nitrogen ◽  
Bacterial Enzyme ◽  
End Products ◽  
Treatment Facilities ◽  
Organic Nutrients ◽  
Structural Levels

AbstractA new bacterial strain, Rhodococcus UKMP-5M isolated from petroleum-contaminated soils demonstrated promising potential to biodegrade cyanide to non-toxic end-products. Ammonia and formate were found as final products during growth of the isolate with KCN as the sole nitrogen source. Formamide was not detected as one of the end-products suggesting that the biodegradation of cyanide by Rhodococcus UKMP-5M may have proceeded via a hydrolytic pathway involving the bacterial enzyme cyanidase. No growth of the bacterium was observed when KCN was supplied as the sole source of carbon and nitrogen even though marginal reduction in the concentration of cyanide was recorded, indicating the toxic effect of cyanide even in cyanide-degrading microorganisms. The cyanide biodegradation ability of Rhodococcus UKMP-5M was greatly affected by the presence of organic nutrients in the medium. Medium containing glucose and yeast extract promoted the highest growth rate of the bacterium which simultaneously assisted complete biodegradation of 0.1 mM KCN within 24 hours of incubation. It was found that growth and cyanide biodegradation occurred optimally at 30°C and pH 6.3 with glucose as the preferred carbon source. Acetonitrile was used as an inducer to enhance cyanide biodegradation since the enzymes nitrile hydratase and/or nitrilase have similarity at both the amino acid and structural levels to that of cyanidase. The findings from this study should be of great interest from an environmental and health point of views since the optimum conditions discovered in the present study bear a close resemblance to the actual scenario of cyanide wastewater treatment facilities.

Simultaneous degradation of acetonitrile and biphenyl by Pseudomonas aeruginosa

1991 ◽  
Vol 37 (6) ◽  
pp. 411-418 ◽  
Author(s):  
Mohamed S. Nawaz ◽  
Kirit D. Chapatwala
Keyword(s):  
Pseudomonas Aeruginosa ◽  
Acetic Acid ◽  
Benzoic Acid ◽  
Sole Carbon Source ◽  
Nitrile Hydratase ◽  
Sole Source ◽  
Sole Nitrogen Source ◽  
Carbon And Nitrogen ◽  
Simultaneous Degradation ◽  
Key Words Biodegradation

A bacterium capable of utilizing either acetonitrile as the sole source of carbon and nitrogen or biphenyl as the sole source of carbon was isolated from soil and identified as Pseudomonas aeruginosa. The bacterium also utilized other nitriles, amides, and polychlorinated biphenyls (PCBs) as growth substrates. Acetonitrile- or biphenyl-grown cells oxidized these substrates without a lag. In studies with [14C]acetonitrile, nearly 74% of the carbon was recovered as 14CO2 and 8% was associated with the biomass. In studies with [14C]biphenyl, nearly 68% of the carbon was recovered as 14CO2 and nearly 6% was associated with the biomass. Although higher concentrations of acetonitrile as the sole sources of nitrogen inhibited the rates of [14C]biphenyl mineralization, lower concentrations (0.05%, w/v) gave a 77% stimulation in 14CO2 recovery. Pseudomonas aeruginosa metabolized acetonitrile to ammonia and acetic acid and biphenyl to benzoic acid. The bacterium also simultaneously utilized biphenyl as the sole carbon source and acetonitrile as the sole nitrogen source. However, biphenyl utilization increased only after the depletion of acetronitrile. Metabolites of the mixed substrate were ammonia and benzoic acid, which completely disappeared in the later stages of incubation. Nitrile hydratase and amidase were resposible for the transformation of acetonitrile to acetic acid and ammonia. Key words: biodegradation, acetonitrile, biphenyl, Pseudomonas aeruginosa.

scholarly journals BIOTRANSFORMASI ADIPONITRIL OLEH Bacillus licheniformis BA2

2004 ◽  
Vol 10 (1) ◽  
pp. 25-30
Author(s):  
Ahmad Thontowi ◽  
Eko W. Pamuji ◽  
Bambang Sunarko
Keyword(s):  
Bacillus Licheniformis ◽  
Adipic Acid ◽  
High Performance ◽  
Biomass Yield ◽  
Sole Source ◽  
Lag Phase ◽  
Optimum Conditions ◽  
Carbon And Nitrogen ◽  
Nylon 6,6 ◽  
Sequential Formation

Adipic acid represents one of the especial materials which used for the synthesis of nylon 6,6,- is a very important material results from polyamide industry. Adiponitrile biotransformation become adipic acid represent an alternative synthesis besides chemically. The purpose of this research was to determine optimum conditions for Bacillus licheniformis BA2 growth for adiponitrile degradation, and also know its pattern. The obtained information, to be expected can be used as reference for scaling up of adipic acid production. B. licheniformis BA2 was able to utilize acetonitrile and adiponitrile as the sole source of carbon and nitrogen. The growth on adiponitrile 120 mM mixture with acetonitrile 30 mM gave higher growth rate and biomass yield than growth on another subsrates. B. licheniformis BA2 have lag phase during 68 hours, logaritmic phase passed by during 104 hours, while stasioner phase just reached by after 172 hours. High-performance liquid chromatography of adiponitrile degradation by crude bacterial revealed a decrease in adiponitrile with the sequential formation of adipamide and adipic acid. Ammonia was also detected by colorimetric procedures. As for adipic acid rendemen at 420 minutes equal to 19.35 percent.

scholarly journals Degradation of benzo[a]pyrene by halophilic bacterial strain Staphylococcus haemoliticus strain 10SBZ1A

PLoS ONE ◽  
2021 ◽  
Vol 16 (2) ◽  
pp. e0247723
Author(s):  
Alexis Nzila ◽  
Musa M. Musa ◽  
Saravanan Sankara ◽  
Marwan Al-Momani ◽  
Lei Xiang ◽  
...  
Keyword(s):  
Bacterial Strain ◽  
Contaminated Soils ◽  
Produced Water ◽  
High Salinity ◽  
Sole Source ◽  
Optimum Conditions ◽  
Molecular Weights ◽  
Polycyclic Aromatic ◽  
Rrna Sequences ◽  
Petroleum Oil

The exploitation of petroleum oil generates a considerable amount of “produced water or petroleum waste effluent (PWE)” that is contaminated with polycyclic aromatic hydrocarbons (PAHs), including Benzo[a]pyrene (BaP). PWE is characterised by its high salinity, which can be as high as 30% NaCl, thus the exploitation of biodegradation to remove PAHs necessitates the use of active halophilic microbes. The strain 10SBZ1A was isolated from oil contaminated soils, by enrichment experiment in medium containing 10% NaCl (w/v). Homology analyses of 16S rRNA sequences identified 10SBZ1A as a Staphylococcus haemoliticus species, based on 99.99% homology (NCBI, accession number GI: MN388897). The strain could grow in the presence of 4–200 μmol l-1 of BaP as the sole source of carbon, with a doubling time of 17–42 h. This strain optimum conditions for growth were 37 oC, 10% NaCl (w/v) and pH 7, and under these conditions, it degraded BaP at a rate of 0.8 μmol l-1 per day. The strain 10SBZ1A actively degraded PAHs of lower molecular weights than that of BaP, including pyrene, phenanthrene, anthracene. This strain was also capable of removing 80% of BaP in the context of soil spiked with BaP (10 μmol l-1 in 100 g of soil) within 30 days. Finally, a metabolic pathway of BaP was proposed, based on the identified metabolites using liquid chromatography-high resolution tandem mass spectrometry. To the best of our knowledge, this is the first report of a halophilic BaP degrading bacterial strain at salinity > 5% NaCl.

scholarly journals Optimum conditions for Prodigiosin production by Serratia marcescens S11

2011 ◽  
Vol 5 (3) ◽  
pp. 34-40
Author(s):  
Abdulkareem Jasim ◽  
Hameed M. Jasim ◽  
Isra'a M. Dhahi
Keyword(s):  
Serratia Marcescens ◽  
Culture Medium ◽  
Casein Hydrolysate ◽  
Brain Heart Infusion ◽  
Nitrogen Sources ◽  
Optimum Conditions ◽  
Carbon And Nitrogen Sources ◽  
Carbon And Nitrogen ◽  
Phosphate Source ◽  
Initial Medium

Different nutritional and cultural factors were studied to determine the optimum conditions for prodigiosin production by Serratia marcescens S11 in a batch culture of brain-heart infusion broth medium. These factors include carbon source and its concentration, nitrogen source and its concentration, phosphate source, temperature and pH. Results showed that the optimum conditions for prodigiosin production were achieved when the production medium was supplemented with olive oil and casein hydrolysate as a carbon and nitrogen sources respectively in a concentration of 1.5% for broth, KH2PO4 as a phosphate source at initial medium pH8, and incubation at 28°C for 24 hours. Under these optimal conditions, prodigiosin activity produced by Serratia marcescens S11 in culture medium was increased from 200 U/cell before optimization to 3000 U/cell.

scholarly journals Amino Acid-Mediated Induction of the Basic Amino Acid-Specific Outer Membrane Porin OprD from Pseudomonas aeruginosa

1999 ◽  
Vol 181 (17) ◽  
pp. 5426-5432 ◽  
Author(s):  
Martina M. Ochs ◽  
Chung-Dar Lu ◽  
Robert E. W. Hancock ◽  
Ahmed T. Abdelal
Keyword(s):  
Amino Acids ◽  
Pseudomonas Aeruginosa ◽  
Amino Acid ◽  
Regulatory Protein ◽  
Basic Amino Acid ◽  
Sole Source ◽  
Activation Mechanism ◽  
Beta Lactam ◽  
Mobility Shift ◽  
Carbon And Nitrogen

ABSTRACT Pseudomonas aeruginosa can utilize arginine and other amino acids as both carbon and nitrogen sources. Earlier studies have shown that the specific porin OprD facilitates the diffusion of basic amino acids as well as the structurally analogous beta-lactam antibiotic imipenem. The studies reported here showed that the expression of OprD was strongly induced when arginine, histidine, glutamate, or alanine served as the sole source of carbon. The addition of succinate exerted a negative effect on induction ofoprD, likely due to catabolite repression. The arginine-mediated induction was dependent on the regulatory protein ArgR, and binding of purified ArgR to its operator upstream of theoprD gene was demonstrated by gel mobility shift and DNase assays. The expression of OprD induced by glutamate as the carbon source, however, was independent of ArgR, indicating the presence of more than a single activation mechanism. In addition, it was observed that the levels of OprD responded strongly to glutamate and alanine as the sole sources of nitrogen. Thus, that the expression ofoprD is linked to both carbon and nitrogen metabolism ofPseudomonas aeruginosa.

scholarly journals Optimum Conditions for Phenol Oxidase (Laccase) Production from Azotobacter chroococcum by Submerged Fermentation

2017 ◽  
Vol 11 (1) ◽  
pp. 13-18
Author(s):  
Ali J. R. AL-Sa'ady ◽  
Lamees M.R. Abbas ◽  
Hutaf A.A. ALsalim
Keyword(s):  
Incubation Period ◽  
Incubation Temperature ◽  
Nitrogen Sources ◽  
Phenol Oxidase ◽  
Azotobacter Chroococcum ◽  
Laccase Production ◽  
Optimum Conditions ◽  
Carbon And Nitrogen Sources ◽  
Carbon And Nitrogen ◽  
Production Conditions

Phenol oxidases (laccase), copper-containing oxidase enzymes, are found in many plants, fungi and microorganisms. Many factors that influence laccase production from Azotobacter chroococcum are determined in this study, these factors are: carbon source, nitrogen source, pH, incubation temperature and incubation period. The results showed that the best carbon and nitrogen sources for laccase production are sucrose and yeast extract respectively, and the best factors for laccase production conditions are pH 7.0 with an incubation period of 6 days at temperature 30 Cᵒ.

scholarly journals Quantitative effects of defaunation on rumen fermentation and digestion in sheep

1985 ◽  
Vol 54 (1) ◽  
pp. 105-119 ◽  
Author(s):  
J. B. Rowe ◽  
A. Davies ◽  
A. W. J. Broome
Keyword(s):  
Organic Matter ◽  
Population Density ◽  
Volatile Fatty Acids ◽  
Rumen Fluid ◽  
Dietary Carbohydrate ◽  
High Population Density ◽  
Irreversible Loss ◽  
Faecal Excretion ◽  
Carbon And Nitrogen ◽  
End Products

1. Studies on the quantitative significance of protozoa on carbon and nitrogen digestion and metabolism in the rumen were carried out in sheep given a diet of pelleted concentrate (500 g/d) and chopped hay (500 g/d).2. Measurements were made of apparent digestibility; flows of organic matter and dietary and microbial non-ammonia N (NAN) (using 15NH+4) to the duodenum; and rates of production, interconversion and metabolism of the major C fermentation end-products (from mathematical modelling of 14C isotope values).3. The population density of bacteria in the rumen increased as a result of defamation (28.6 compared with 8.2 x 10° organisms/ml). This high density was associated with greater utilization of volatile fatty acids (VFA) within the rumen.4. The rate of irreversible loss (IL) of bicarbonatefcarbon dioxide from the rumen was greater in the defaunated animals (98.5 v. 57.2 g C/d) but the IL from the blood was greater in the faunated group (138.6 v. 106.1 g C/d). This is consistent with the hypothesis that the high population density of bacteria found in the rumen fluid of defaunated animals may result in increased fermentation of rumen VFA and digestible dietary carbohydrate, thereby increasing the output of CO2 from the rumen and reducing the quantity of VFA (hence energy) available to the host.5. There was no difference in the flow of organic matter (OM) to the duodenum but there was a higher faecal excretion of OM in defaunated animals (apparent OM digestibility: 0.72 in faunated, 0.67 in defaunated).6. Defamation did not significantly increase the flow of NAN to the duodenum, the percentage of duodenal NAN of bacterial origin or the quantity of microbial NAN synthesized/g organic matter fermented. Faecal excretion of NAN was higher in defaunated animals (5.3 v. 3.6 g N/d).

scholarly journals Molecular Mechanism ofN,N-Dimethylformamide Degradation inMethylobacteriumsp. Strain DM1

2019 ◽  
Vol 85 (12) ◽  
Author(s):  
Xinyu Lu ◽  
Weiwei Wang ◽  
Lige Zhang ◽  
Haiyang Hu ◽  
Ping Xu ◽  
...  
Keyword(s):  
Molecular Mechanisms ◽  
Gene Clusters ◽  
Sole Source ◽  
Human Beings ◽  
Sequencing Data ◽  
Carbon And Nitrogen ◽  
Redundant Genes ◽  
Evolutionary Advantage ◽  
Redundant Gene ◽  
Phenotype Identification

ABSTRACTN,N-Dimethylformamide (DMF) is one of the most common xenobiotic chemicals, and it can be easily emitted into the environment, where it causes harm to human beings. Herein, an efficient DMF-degrading strain, DM1, was isolated and identified asMethylobacteriumsp. This strain can use DMF as the sole source of carbon and nitrogen. Whole-genome sequencing of strain DM1 revealed that it has a 5.66-Mbp chromosome and a 200-kbp megaplasmid. The plasmid pLVM1 specifically harbors the genes essential for the initial steps of DMF degradation, and the chromosome carries the genes facilitating subsequent methylotrophic metabolism. Through analysis of the transcriptome sequencing data, the complete mineralization pathway and redundant gene clusters of DMF degradation were elucidated. The dimethylformamidase (DMFase) gene was heterologously expressed, and DMFase was purified and characterized. Plasmid pLVM1 is catabolically crucial for DMF utilization, as evidenced by the phenotype identification of the plasmid-free strain. This study systematically elucidates the molecular mechanisms of DMF degradation byMethylobacterium.IMPORTANCEDMF is a hazardous pollutant that has been used in the chemical industry, pharmaceutical manufacturing, and agriculture. Biodegradation as a method for removing DMF has received increasing attention. Here, we identified an efficient DMF degrader,Methylobacteriumsp. strain DM1, and characterized the complete DMF mineralization pathway and enzymatic properties of DMFase in this strain. This study provides insights into the molecular mechanisms and evolutionary advantage of DMF degradation facilitated by plasmid pLVM1 and redundant genes in strain DM1, suggesting the emergence of new ecotypes ofMethylobacterium.

Description of bacteria able to degrade isoquinoline in pure culture

1994 ◽  
Vol 40 (7) ◽  
pp. 555-560 ◽  
Author(s):  
J. Aislabie ◽  
N. K. Richards ◽  
T. C. Lyttle
Keyword(s):  
Heterocyclic Compound ◽  
Pure Culture ◽  
Sole Source ◽  
Broth Culture ◽  
Gram Negative ◽  
Carbon And Nitrogen ◽  
The Family ◽  
Nitrogen Heterocyclic

Isoquinoline is a nitrogen heterocyclic compound that is associated with coal- and oil-derived wastes. Four strains of bacteria able to degrade isoquinoline in pure culture were isolated from sites known to be contaminated with oil. Isoquinoline was used as the sole source of carbon and nitrogen by these isolates. Isoquinoline was initially transformed to 1-hydroxyisoquinoline, which accumulated in the broth culture, and then disappeared. The four strains isolated were Gram negative, aerobic, rod-shaped bacteria with polar flagella. The strains have been presumptively identified as members of the family Comamonadaceae.Key words: isoquinoline degradation, Comamonadaceae.not available

YELLOW CHROMOGENIC BACTERIA ON WHEAT: II. DETERMINATIVE STUDIES

1955 ◽  
Vol 1 (7) ◽  
pp. 479-485 ◽  
Author(s):  
Norman James
Keyword(s):  
Sole Source ◽  
Carbon And Nitrogen ◽  
Early Literature ◽  
Predominant Type ◽  
Xanthomonas Translucens

The predominant type of yellow chromogenic bacteria easily isolated from normal wheat and other seeds, and in the early literature referred to as Bacterium herbicola aureum Diiggeli, is like Xanthomonas translucens in many aspects—in morphology, colony characteristics, type of pigment, and habitat. These bacteria differ from the latter species in that they are not pathogenic and they grow moderately in a medium containing asparagine as the sole source of carbon and nitrogen. The problem of nomenclature of these bacteria is considered. Evidence that justifies acceptance of Pseudomonas trifolii Huss as the legitimate name of the species and transference of the species to the genus Xanthomonas is presented. The name Xanthomonas trifolii (Huss) comb. nov. is proposed.

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