Genetic diversity and phylogenetic origin of brown trout Salmo trutta populations in eastern Balkans

Biologia ◽  
2013 ◽  
Vol 68 (6) ◽  
Author(s):  
Jan Kohout ◽  
Alena Šedivá ◽  
Apostolos Apostolou ◽  
Tihomir Stefanov ◽  
Saša Marić ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Black Sea ◽  
Brown Trout ◽  
Aegean Sea ◽  
Aral Sea ◽  
Danube Basin ◽  
Mutational Step ◽  
Phylogenetic Origin ◽  
The Impact ◽  
Central Haplotype

AbstractThe study focuses on the phylogenetic origin and genetic diversity of brown trout in the eastern part of the Balkan Peninsula. It further aims to reveal the impact of human-mediated transfers and stocking with non-indigenous trout on the populations in this area. For these purposes, mtDNA control region and microsatellite variation of 204 individuals from 16 populations were analysed. The results indicate that mtDNA haplotypes from the lower Danube basin and southern Black Sea basins differ substantially from a subclade of the Danubian lineage consisting of haplotypes found so far in the most of the Danube basin and in the Caspian and Aral Sea basins. Considering also the results of demographic analyses, this study evidences a complex evolutionary history of brown trout in the southern and western parts of the Black Sea basin. In the Aegean Sea basin, a high frequency of the central haplotype of Adriatic mtDNA lineage has been found. The other Adriatic lineage haplotypes found in this basin differ from the central haplotype by one mutational step only, indicating a recent evolution of the Adriatic lineage in the Aegean Sea basin. Substantial genetic differentiation among populations and basins was revealed. The hybridization with Atlantic brown trout was indicated in both sea basins, but especially in the Danube basin. Compared to other European regions, it can be inferred that the introgression of exogenous brown trout in the eastern Balkan populations is rather low.

scholarly journals Sensitivity of the N. AEGEAN SEA ecosystem to Black Sea Water inputs

2014 ◽  
Vol 15 (4) ◽  
pp. 790 ◽  
Author(s):  
G. PETIHAKIS ◽  
K. TSIARAS ◽  
G. TRIANTAFYLLOU ◽  
S. KALARONI ◽  
A. POLLANI
Keyword(s):  
Organic Matter ◽  
Dissolved Organic Matter ◽  
Black Sea ◽  
Sea Water ◽  
Aegean Sea ◽  
Microbial Loop ◽  
Inorganic Nutrients ◽  
The North ◽  
North Aegean Sea ◽  
The Impact

The effect of Black Sea Water (BSW) inputs on the North Aegean Sea productivity and food web dynamics was investigated, by means of sensitivity simulations, investigating the effect of the inflowing BSW, in terms of inorganic nutrients and dissolved organic matter. The model used has been successfully applied in the area in the past and extensively presented. Considering the importance of the microbial loop in the ecosystem functioning, the role of the dissolved organics and in order to achieve a more realistic representation of the Dissolved Organic Matter pool, the bacteria sub-model was appropriately revised. The importance of the microbial loop is highlighted by the carbon fluxes where almost 50% of carbon is channelled within it. The impact of dissolved organic matter (DOM) (in the inflowing to the Aegean Sea, BSW) appears to be stronger than the impact of dissolved inorganic nutrients, showing a more extended effect over the N Aegean. Bacterial production and biomass is more strongly affected in the simulations by modified DOM, unlike phytoplankton biomass and production, which are more dependent on the inflowing nutrients and particularly phosphorus (inorganic and dissolved organic). In the phytoplankton composition, the dinoflagellates appear to be mostly affected, being favoured by higher nutrient availability at the expense of all other groups, particularly picoplankton, indicating a shift to a more classical food chain.

Modelling the impact of Black Sea water inflow on the North Aegean Sea hydrodynamics

2010 ◽  
Vol 60 (3) ◽  
pp. 585-596 ◽  
Author(s):  
Margarita Tzali ◽  
Sarantis Sofianos ◽  
Anneta Mantziafou ◽  
Nikolaos Skliris
Keyword(s):  
Black Sea ◽  
Sea Water ◽  
Aegean Sea ◽  
Water Inflow ◽  
The North ◽  
North Aegean ◽  
North Aegean Sea ◽  
The Impact

scholarly journals Application of the geometric morphometrics approach in the discrimination of morphological traits between brown trout lineages in the Danube Basin of Croatia

2021 ◽  
pp. 22
Author(s):  
Ivan Špelić ◽  
Andrea Rezić ◽  
Tamara Kanjuh ◽  
Ana Marić ◽  
Ivana Maguire ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Geometric Morphometrics ◽  
Brown Trout ◽  
Function Analysis ◽  
Phylogenetic Analyses ◽  
Canonical Variate ◽  
Shape Variation ◽  
Danube Basin ◽  
Body Depth ◽  
Significant Difference

Brown trout is a salmonid fish with a natural range extending throughout western Eurasia and North Africa. Due to its commercial value, it has also been introduced worldwide. In continental Croatia, introduced trout of the Atlantic lineage hybridizes with native trout of the Danubian lineage, threatening the native genetic diversity. The geometric morphometrics approach was used in this study to analyse changes in shape between native trout, introduced trout and their hybrids, classified a priori by molecular phylogenetic analyses. A total of 19 landmarks and semi-landmarks were used to capture the shape of 92 trout individuals belonging to two lineages and their hybrids. Canonical variate analysis and discriminant function analysis were used to analyse and describe shape variation. A significant difference was found between the shape of the Atlantic lineage trout and both Danubian lineage trout and hybrids, with the most prominent differences in body depth, head length and eye size. No statistically significant shape differences were observed between Danubian lineage trout and the hybrids. The observed significant differences in shape could be the result of genetic diversity or trout phenotypic plasticity. Further studies are needed to clarify the origin of this variation in shape.

scholarly journals Influence of historical and human factors on genetic structure and diversity patterns in peripheral populations: implications for the conservation of Moroccan trout

2020 ◽  
Author(s):  
S Perea ◽  
M Al Amouri ◽  
EG Gonzalez ◽  
L Alcaraz ◽  
A Yahyaoui ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Genetic Structure ◽  
Brown Trout ◽  
Distribution Range ◽  
Peripheral Populations ◽  
List Type ◽  
Genetic Structuring ◽  
Evolutionary Patterns ◽  
Genetic Structure And Diversity ◽  
The Impact

AbstractThe brown trout s.l. has been the focus of numerous phylogeographic and conservation studies due to its socioeconomic importance, its marked genetic and phenotypic differentiation and its broad distribution range. Especially interesting evolutionary patterns are observed for populations occupying peripheral areas of a distribution range, such as in the case of the highly isolated trout populations in Morocco.Continuous stocking programs may conceal natural genetic patterns, making it challenging to discern evolutionary patterns. In Morocco, trout stocking programs have been implemented to increase the genetic diversity of native populations by pooling fish of different origins in the Ras el Ma hatchery (Azrou region) and then stocking them in the different basins. In this study, phylogenetic and phylogeographic patterns, as well as genetic structure and diversity, of Moroccan trout populations were analyzed to evaluate the impact of continuous fish stocking on evolutionary processes in order to better distinguish between natural and human-mediated patterns.Two mitochondrial and nine microsatellite markers were analyzed for all populations along the entire distribution range of brown trout in Morocco. Phylogenetic and phylogeographic analyses rendered two highly divergent evolutionary lineages, one comprising populations in the Drâa Basin and a second grouping the remaining Moroccan populations. Divergence of the Drâa lineage occurred during the Upper Pliocene, whilst differentiation within the second lineage coincided with the onset of the Pleistocene.Genetic structuring among populations was evident. Nevertheless, populations exhibiting higher levels of genetic diversity were those affected by human-mediated processes, making it difficult to associate this diversity with natural processes. In fact, highly geographically isolated, not stocked populations showed the lowest values of genetic diversity. Although stocking management may increase the genetic diversity of these populations, it could also lead to the loss of local adaptive genotypes. Hence, current trout conservation programs should be revised.

SITE-SPECIFIC EQUATIONS OF STATE FOR COASTAL SEA AREAS AND INLAND WATER BODIES

2017 ◽  
Author(s):  
Natalia Andrulionis ◽  
Natalia Andrulionis ◽  
Ivan Zavialov ◽  
Ivan Zavialov ◽  
Elena Kovaleva ◽  
...  
Keyword(s):  
Equation Of State ◽  
Black Sea ◽  
Water Samples ◽  
Equations Of State ◽  
Sea Water ◽  
Ionic Composition ◽  
Water Bodies ◽  
Aral Sea ◽  
The Black Sea ◽  
Coastal Sea

This article presents a new method of laboratory density determination and construction equations of state for marine waters with various ionic compositions and salinities was developed. The validation of the method was performed using the Ocean Standard Seawater and the UNESCO thermodynamic equation of state (EOS-80). Density measurements of water samples from the Aral Sea, the Black Sea and the Issyk-Kul Lake were performed using a high-precision laboratory density meter. The obtained results were compared with the density values calculated for the considered water samples by the EOS-80 equation. It was shown that difference in ionic composition between Standard Seawater and the considered water bodies results in significant inaccuracies in determination of water density using the EOS-80 equation. Basing on the laboratory measurements of density under various salinity and temperature values we constructed a new equation of state for the Aral Sea and the Black Sea water samples and estimated errors for their coefficients.

CORRELATION OF THE BLACK, MARMARA AND AEGEAN SEAS DURING THE HOLOCENE

2017 ◽  
Author(s):  
Nikolay Esin ◽  
Nikolay Esin ◽  
Vladimir Ocherednik ◽  
Vladimir Ocherednik
Keyword(s):  
Mathematical Model ◽  
Sea Level ◽  
Black Sea ◽  
Aegean Sea ◽  
The Black Sea ◽  
Sea Level Changes ◽  
The Holocene

A mathematical model describing the change in the Black Sea level depending on the Aegean Sea level changes is presented in the article. Calculations have shown that the level of the Black Sea has been repeating the course of the Aegean Sea level for the last at least 6,000 years. And the level of the Black Sea above the Aegean Sea level in the tens of centimeters for this period of time.

A voyage to Ancient Greek Harbours on board Limenoscope

2007 ◽  
Vol 7 (1) ◽  
pp. 253-260 ◽  
Author(s):  
T. Theodoulou ◽  
C. Memos
Keyword(s):  
Black Sea ◽  
General Public ◽  
Aegean Sea ◽  
Relevant Information ◽  
The Black Sea ◽  
Ancient Greek ◽  
Web Based ◽  
Database Structure ◽  
Historical Role ◽  
Concise Information

Limenoscope is a web based database aiming at promoting the cultural heritage regarding ancient Greek harbours and disseminate the relevant information equally to the general public and to researchers with an interest in that particular cognitive field. The scope of the project is the realization of a database, where one can search for concise information relevant to the historical role, the topography, the morphology, as well as the technical works and installations of ancient harbours in the Mediterranean and the Black Sea. The Database started off with the registration of harbours located in the Aegean Sea and Cyprus, dating from Archaic to Byzantine times. Special emphasis is laid on the bibliographical update of the data forms of the harbour sites, as well as on the related references in ancient literature. The database enables the locating of these sites on a general map, where photographs, plans etc. are also archived. The principles of the database structure are briefly presented along with an example, that of the harbour of Phalasarna, among the harbours registered therein.

scholarly journals Trends in genetic diversity and the effect of inbreeding in American Angus cattle under genomic selection

2021 ◽  
Vol 53 (1) ◽  
Author(s):  
Emmanuel A. Lozada-Soto ◽  
Christian Maltecca ◽  
Duc Lu ◽  
Stephen Miller ◽  
John B. Cole ◽  
...  
Keyword(s):  
Genetic Diversity ◽  
Beef Cattle ◽  
Genomic Selection ◽  
Inbreeding Depression ◽  
Growth Traits ◽  
Effective Population ◽  
Angus Cattle ◽  
Genomic Inbreeding ◽  
Chromosome Segments ◽  
The Impact

Abstract Background While the adoption of genomic evaluations in livestock has increased genetic gain rates, its effects on genetic diversity and accumulation of inbreeding have raised concerns in cattle populations. Increased inbreeding may affect fitness and decrease the mean performance for economically important traits, such as fertility and growth in beef cattle, with the age of inbreeding having a possible effect on the magnitude of inbreeding depression. The purpose of this study was to determine changes in genetic diversity as a result of the implementation of genomic selection in Angus cattle and quantify potential inbreeding depression effects of total pedigree and genomic inbreeding, and also to investigate the impact of recent and ancient inbreeding. Results We found that the yearly rate of inbreeding accumulation remained similar in sires and decreased significantly in dams since the implementation of genomic selection. Other measures such as effective population size and the effective number of chromosome segments show little evidence of a detrimental effect of using genomic selection strategies on the genetic diversity of beef cattle. We also quantified pedigree and genomic inbreeding depression for fertility and growth. While inbreeding did not affect fertility, an increase in pedigree or genomic inbreeding was associated with decreased birth weight, weaning weight, and post-weaning gain in both sexes. We also measured the impact of the age of inbreeding and found that recent inbreeding had a larger depressive effect on growth than ancient inbreeding. Conclusions In this study, we sought to quantify and understand the possible consequences of genomic selection on the genetic diversity of American Angus cattle. In both sires and dams, we found that, generally, genomic selection resulted in decreased rates of pedigree and genomic inbreeding accumulation and increased or sustained effective population sizes and number of independently segregating chromosome segments. We also found significant depressive effects of inbreeding accumulation on economically important growth traits, particularly with genomic and recent inbreeding.

scholarly journals Impact of cyclones on hard coral and metapopulation structure, connectivity and genetic diversity of coral reef fish

Coral Reefs ◽  
2021 ◽  
Author(s):  
Gabriele Gerlach ◽  
Philipp Kraemer ◽  
Peggy Weist ◽  
Laura Eickelmann ◽  
Michael J. Kingsford
Keyword(s):  
Genetic Diversity ◽  
Coral Reef ◽  
Genetic Structure ◽  
Reef Fish ◽  
Coral Reef Fish ◽  
Population Genetic Study ◽  
Hard Coral ◽  
Great Loss ◽  
Metapopulation Structure ◽  
The Impact

AbstractCyclones have one of the greatest effects on the biodiversity of coral reefs and the associated species. But it is unknown how stochastic alterations in habitat structure influence metapopulation structure, connectivity and genetic diversity. From 1993 to 2018, the reefs of the Capricorn Bunker Reef group in the southern part of the Great Barrier Reef were impacted by three tropical cyclones including cyclone Hamish (2009, category 5). This resulted in substantial loss of live habitat-forming coral and coral reef fish communities. Within 6–8 years after cyclones had devastated, live hard corals recovered by 50–60%. We show the relationship between hard coral cover and the abundance of the neon damselfish (Pomacentrus coelestis), the first fish colonizing destroyed reefs. We present the first long-term (2008–2015 years corresponding to 16–24 generations of P. coelestis) population genetic study to understand the impact of cyclones on the meta-population structure, connectivity and genetic diversity of the neon damselfish. After the cyclone, we observed the largest change in the genetic structure at reef populations compared to other years. Simultaneously, allelic richness of genetic microsatellite markers dropped indicating a great loss of genetic diversity, which increased again in subsequent years. Over years, metapopulation dynamics were characterized by high connectivity among fish populations associated with the Capricorn Bunker reefs (2200 km2); however, despite high exchange, genetic patchiness was observed with annual strong genetic divergence between populations among reefs. Some broad similarities in the genetic structure in 2015 could be explained by dispersal from a source reef and the related expansion of local populations. This study has shown that alternating cyclone-driven changes and subsequent recovery phases of coral habitat can greatly influence patterns of reef fish connectivity. The frequency of disturbances determines abundance of fish and genetic diversity within species.

scholarly journals Multi-Criteria Analysis of the Mass Tourism Management Model Related to the Impact on the Local Community in Constanta City (Romania)

Inventions ◽  
2021 ◽  
Vol 6 (3) ◽  
pp. 46
Author(s):  
Catalin Anton ◽  
Angela-Eliza Micu ◽  
Eugen Rusu
Keyword(s):  
Black Sea ◽  
Seasonal Cycle ◽  
Local Community ◽  
Local Economy ◽  
Management Model ◽  
The Black Sea ◽  
Mass Tourism ◽  
Tourism Management ◽  
The Impact ◽  
The City

Traditionally and socially, the tourism in Constanta is considered to be important to the local economy. Sun and beach locations are both a draw for locals and tourists to the city, on the Black Sea. However, vacation-oriented activities in the city only have a seasonal cycle. In this paper, we proposed to analyze the mass tourist activity in Constanta, taking into account economic, social, and environmental conditions. Additionally, we attempted to build a model based on the data available. The model was developed using a PESTEL analysis to determine the supportability factor of the indicators identified. We also set out to create a projection of the activities proposed for analysis by 2050. To create a model for coastal areas, the data used in this research must be accurate and consistent. Furthermore, correctly identifying indicators and their relationships is a critical step in conducting a thorough study. Last but not least, finding the calculation coefficient for the activity in question is critical, as collecting data from various activities might be challenging when trying to find a feasible model.

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