scholarly journals Identifikasi dan Karakterisasi Sumber Daya Genetik Buah-buahan di Kabupaten Buleleng

2019 ◽  
Vol 8 (2) ◽  
pp. 137
Author(s):  
I GUSTI AGUNG BAGUS SURADARMA ◽  
GEDE WIJANA ◽  
I NYOMAN SUTEDJA

Identification and Characterization of Fruit Genetic Resources in Buleleng Regency. Fruits have great potential to be developed both to meet the needs of domestic and foreign demand, because the fruits is a source of supply of vitamins, minerals, and fiber needed in the daily menu. Several types of fruit are also required as spa, medicines, and as a means of upakara. One of the prospective development of fruits in Bali is Buleleng. Types of fruit in Buleleng are grape, mango, durian, rambutan and banana. Until now there has been generally identified genetic resources fruits in Buleleng. This study aims to identify, profile and draw up a map of the geographic distribution of genetic resources of fruits in Buleleng. Implementation of the study consists of four activities, namely: secondary data collection, survey of the types of genetic resources and distribution, identification of morphological and agronomic characters of each type of genetic resources and the growing environment and the benefits of fruits. The seeded fruit is determined by Location Quotion (LQ). Based on the observations in the field, Buleleng has a wide range of genetic resources. In a direct observation to the field there are 32 kinds of fruit and 31 sub-types of fruit. Fruits are grouped based on the economic value and their role, including: commercial fruit, rare fruit, fruit for upakara and fruit for medicine. Based on the calculation of LQ method, Buleleng has four featured i.e. avocado, grape, mango and rambutan (LQ>1).

2022 ◽  
Vol 147 (1) ◽  
pp. 7-17
Author(s):  
Ying Yang ◽  
Xian-Ge Hu ◽  
Bingsong Zheng ◽  
Yue Li ◽  
Tongli Wang ◽  
...  

MicroRNAs (miRNAs) are short noncoding RNAs (20–25 nucleotides) that regulate gene expression posttranscriptionally. However, identification and characterization of miRNAs remain limited for conifer species. In this study, we applied transcriptome-wide miRNAs sequencing to a conifer species Platycladus orientalis, which is highly adaptable to a wide range of environmental adversities, including drought, barren soil, and mild salinity. A total of 17,181,542 raw reads were obtained from the Illumina sequencing platform; 31 conserved and 91 novel miRNAs were identified, and their unique characteristics were further analyzed. Ten randomly selected miRNAs were validated by quantificational real-time polymerase chain reaction. Through miRNA target predictions based on psRNATarget, 2331 unique mRNAs were predicted to be targets of P. orientalis miRNAs that involved in 187 metabolic pathways in KEGG database. These targets included not only important transcription factors (e.g., class III homeodomain leucine zipper targeted by por-miR166d) but also indispensable nontranscriptional factor proteins (i.e., por-miR482a-3p regulated nucleotide-binding site leucine-rich repeat protein). Interestingly, six miRNAs (por-miR16, -miR44, -miR60-5p, -miR69–3p, -miR166b-5p, and -miR395c) were found in adaptation-related pathways (e.g., drought), indicating their possible involved in this species’ stress-tolerance characteristics. The present study provided essential information for understanding the regulatory role of miRNAs in P. orientalis and sheds light on their possible use in tree improvement for stress tolerance.


Author(s):  
Laila S.H. Al-Naamani ◽  
Sergey Dobretsov ◽  
Jamal Al-Sabahi ◽  
Bassam Soussi

Marine sources have been known to yield novel compounds with a wide range of bioactivity with various commercial applications. In this study, the abilities of bacteria isolated from eight marine organisms to produce α-amylase were examined. All eight organisms were found to harbor amylase producing bacteria. Two bacterial species isolated from the green alga Ulva rigida and the sponge Mycale sp. were further identified and their α-amylases were purified and characterized. The bacterial species isolated from U. rigida and Mycale sp. were identified by DNA sequencing as Cellulosimicrobium sp. and Demequina sp., respectively. Cellulosimicrobium sp. obtained maximum cell growth and amylase production at 29.C and in the presence of lactose as a carbon source. Optimal cell growth and amylase production by Demequina sp. was observed at 35.C. While lactose enhanced cell growth of Demequina sp., maximum amylase production was found when fructose and glycerol were the available sources of carbon. Both strains grew better in the presence of tryptone, whilst peptone stimulated amylase production. Maximal cell growth and amylase production by both of the strains was found at a medium salinity of 3% NaCl. 


2009 ◽  
pp. 143-148 ◽  
Author(s):  
D. Szalatnay ◽  
R. Eder-Bauermeister ◽  
B. Duffy ◽  
M. Kellerhals

Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 1706-1706 ◽  
Author(s):  
Whitney Tolpinrud ◽  
Massimiliano Gaetani ◽  
Yelena Maksimova ◽  
Sara Mootien ◽  
Sandra Harper ◽  
...  

Abstract Spectrin, the major structural component of the erythrocyte membrane skeleton, is composed of α and β chains that self-associate to form tetramers. These tetramers provide the structural integrity and flexibility critical for erythrocyte stability and shape. Mutations of α spectrin have been associated with hereditary spherocytosis (HS), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). The large size of the spectrin molecule has complicated its study. We developed a high-throughput capillary nucleotide sequencing strategy to identify mutations of the α-spectrin gene in a group of patients with spectrin-linked HS, HE, or HPP. We identified several variants including 8 nonsense, 4 splice junction, and 4 deletion/insertion mutations.(Mutations in >1 patient are counted only once.) We were interested in the identification of missense mutations, as we hypothesize that defects in α-spectrin occur in regions of structural and functional importance and their identification and characterization will provide important information about spectrin and the membrane skeleton. We identified 16 missense mutations in the region encoding the spectrin self-association site; 6 were proline substitutions and 2 were glycine substitutions, both predicted to disrupt the triple helical configuration of spectrin. Outside the self-association site, excluding 3 common protein polymorphisms, we identified 13 missense mutations; 3 were proline substitutions. To begin to study the functional significance of these mutations, we prepared 15 recombinant spectrin-GST fusion peptides containing residues 1–158 of α spectrin, the self-association contact site, representing wild type (WT) or 14 different missense mutations. After expression and purification, purity was assured by SDS-PAGE, absence of aggregation was verified by analytical HPLC gel filtration, and mass confirmed by MS analyses. Analyses by circular dichroism demonstrated that none of the missense mutations significantly modified secondary structure of the recombinant peptide. WT and mutant peptides exhibited a helical content of ∼65%. Ultracentrifugation studies verified that all peptides were monomeric at 4 and 30°C. Differential scanning calorimetry showed that the WT peptide was very stable with a single reversible 2-state transition with a Tm of 54.6°C. All mutations, except R34W, showed transitions similar to WT. R34W unfolded at a much lower Tm, 49.1°C, with a broader single peak transition. Analysis of spectrin tetramerization between α-spectrin peptides and a recombinant β-spectrin peptide (repeats 16, 17 and COOH-terminus) was performed using an analytical HPLC gel filtration assay. A wide range of binding affinities was observed: WT binding Kd=0.43μM at 23°C; group I: I24S, R28C, R28H, R28L, R28S, R45S, no binding; group II: I24T, R41W, L49F, much weaker binding than WT; group III: V31A, R45T, G46V, binding weaker than WT, and R34W and K48R, binding equal to WT. Quantitative thermodynamic analyses of spectrin tetramerization site formation between α and β spectrin peptides were assessed by isothermal calorimetry. These results were essentially comparable to the gel filtration data except the R34W mutant bound β-spectrin more avidly than WT. The identification and characterization of variants associated with HS, HE and HPP continues to extend our understanding and knowledge of both normal membrane biology and human disease pathogenesis.


2012 ◽  
Vol 2012 ◽  
pp. 1-11 ◽  
Author(s):  
Hirak Kumar Barman ◽  
Swagat Kumar Patra ◽  
Varsha Das ◽  
Shibani Dutta Mohapatra ◽  
Pallipuram Jayasankar ◽  
...  

The giant freshwater prawn,Macrobrachium rosenbergii,is an economically important species. It is a euryhaline shrimp, surviving in wide-range salinity conditions. A change in gene expression has been suggested as an important component for stress management. To better understand the osmoregulatory mechanisms mediated by the gill, a subtractive and suppressive hybridization (SSH) tool was used to identify expressed transcripts linked to adaptations in saline water. A total of 117 transcripts represented potentially expressed under salinity conditions. BLAST analysis identified 22% as known genes, 9% as uncharacterized showing homologous to unannotated ESTs, and 69% as unknown sequences. All the identified known genes representing broad spectrum of biological pathways were particularly linked to stress tolerance including salinity tolerance. Expression analysis of 10 known genes and 7 unknown/uncharacterized genes suggested their upregulation in the gills of prawn exposed to saline water as compared to control indicating that these are likely to be associated with salinity acclimation. Rapid amplification of cDNA ends (RACE) was used for obtaining full-length cDNA of MRSW-40 clone that was highly upregulated during salt exposure. The sequenced ESTs presented here will have potential implications for future understanding about salinity acclimation and/or tolerance of the prawn.


Forests ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 29
Author(s):  
Xiansheng Geng ◽  
Ying Liu ◽  
Jiyuan Li ◽  
Zhihong Li ◽  
Jinping Shu ◽  
...  

Camellia japonica is a native tree species with high economic value that is widely cultivated in southern China. In recent years, canker disease has been observed in camellia plantations in Zhejiang Province, China, with the disease incidence rate in some plantations exceeding 20%. Canker disease severely affects the trunks and branches of C. japonica in China, but the causal agent has not yet been identified. In this study, the pathogen was isolated from infected C. japonica tissues through a conventional tissue isolation approach. Species identification was conducted using morphological methods combined with multilocus phylogenetic analysis. Pathogenicity was tested based on Koch’s postulates. The results showed that the pathogen could be isolated from the diseased bark of C. japonica ‘Hongluzhen’. The pathogen was identified as Nectria pseudotrichia based on morphological, cultural, and molecular traits. The inoculation of the pathogen into C. japonica ‘Hongluzhen’ caused necrotic lesions on healthy seedlings, and the fungus N. pseudotrichia could be re-isolated from such lesions. Therefore, N. pseudotrichia is the causal agent of canker disease affecting C. japonica in China.


2021 ◽  
Author(s):  
Yvette Luyten ◽  
Deanna Hausman ◽  
Juliana C. Young ◽  
Lindsey A. Doyle ◽  
Natalia C. Ubilla-Rodriguez ◽  
...  

Bacteriophage exclusion (BREX) phage restriction systems are found in a wide range of bacteria. Various BREX systems encode unique combinations of proteins that usually include a site-specific methyltransferase; none appear to contain a nuclease. Here we describe the identification and characterization of a Type I BREX system from Acinetobacter and the effect of deleting each BREX ORF on growth, methylation and phage restriction. The analysis identified a previously uncharacterized gene at the 5-prime end of the BREX operon that is dispensable for methylation but involved in restriction. Biochemical and crystallographic analyses of this factor, which we term BrxR (BREX Regulator), demonstrate that it forms a homodimer and specifically binds a pseudo-palindromic DNA target site upstream of its transcription start site. Precise deletion of the BrxR gene causes cell toxicity, reduces phage restriction, and significantly increases the expression of BrxC. In contrast, the introduction of a premature stop codon into the BrxR gene has little effect, implying that the BrxR coding sequence and BrxR protein have independent functional roles in BREX regulation. We speculate that the BrxR coding sequence is involved in cis regulation of BREX activity and that the BrxR protein may play an additional regulatory role, perhaps during horizontal transfer of the system.


F1000Research ◽  
2018 ◽  
Vol 7 ◽  
pp. 71
Author(s):  
Wai Hoong Chang ◽  
Alvina G. Lai

The homeodomain-containing proteins are an important group of transcription factors found in most eukaryotes including animals, plants and fungi. Homeobox genes are responsible for a wide range of critical developmental and physiological processes, ranging from embryonic development, innate immune homeostasis to whole-body regeneration. With continued fascination on this key class of proteins by developmental and evolutionary biologists, multiple efforts have thus far focused on the identification and characterization of homeobox orthologs from key model organisms in attempts to infer their evolutionary origin and how this underpins the evolution of complex body plans. Despite their importance, the genetic complement of homeobox genes has yet been described in one of the most valuable groups of animals representing economically important food crops. With crustacean aquaculture being a growing industry worldwide, it is clear that systematic and cross-species identification of crustacean homeobox orthologs is necessary in order to harness this genetic circuitry for the improvement of aquaculture sustainability. Using publicly available transcriptome data sets, we identified a total of 4183 putative homeobox genes from 120 crustacean species that include food crop species, such as lobsters, shrimps, crayfish and crabs. Additionally, we identified 717 homeobox orthologs from 6 other non-crustacean arthropods, which include the scorpion, deer tick, mosquitoes and centipede. This high confidence set of homeobox genes will now serve as a key resource to the broader community for future functional and comparative genomics studies.


Zuriat ◽  
2015 ◽  
Vol 23 (1) ◽  
Author(s):  
, Intan ◽  
Agus Riyanto ◽  
Noor Farid ◽  
, Suprayogi ◽  
Totok Agung D. H.

Diversity of the physical environment which is followed by the diversity of genetic resources in agriculture in Indonesia is very wide. The potential of specific environments can be used by breeders in determining the applicability distribution of a superior new cultivars, such as releasing the rice cultivars tolerant salinity with high yield potential for a wide range of spatial and specific. We growed 10 genotypes of rice and Siak Raya as check in three locations with low to moderate levels of salinity, Kebumen (140 µc/cm-350 µc/cm), Batang (861 µc/cm-5783 µc/cm), dan Pekalongan (670 µc/cm-1416 µc/cm). Genotypes showed difference performance, which indicated diversity of agronomic characters at three location. Genotypes stability were tested refer to Eberhart and Russell (1963), UNSOED 8 is a stable genotype with higher gran yield than the total average of genotypes.


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