scholarly journals Omics and plant responses to Botrytis cinerea

2018 ◽  
Author(s):  
Synan AbuQamar ◽  
Khaled Moustafa ◽  
Lam-Son Tran
Keyword(s):  
Botrytis Cinerea ◽  
Stress Responses ◽  
Defense Mechanisms ◽  
Agricultural Research ◽  
Genetic Manipulation ◽  
Pathogenic Fungus ◽  
Crop Improvement ◽  
Plant Stress ◽  
Plant Responses ◽  
Plant Interactions

Botrytis cinerea is a dangerous plant pathogenic fungus with wide host ranges. This aggressive pathogen uses multiple weapons to invade and cause serious damages on its host plants. The continuing efforts of how to solve the “puzzle” of the multigenic nature of B. cinerea’s pathogenesis and plant defense mechanisms against the disease caused by this mold, the integration of omic approaches, including genomics, transcriptomics, proteomics and metabolomics, along with functional analysis could be a potential solution. Omic studies will provide a foundation for development of genetic manipulation and breeding programs that will eventually lead to crop improvement and protection. In this mini-review, we will highlight the current progresses in research in plant stress responses to B. cinerea using high-throughput omic technologies. We also discuss the opportunities that omic technologies can provide to research on B. cinerea-plant interactions as an example showing the impacts of omics on agricultural research.

The expanding roles of APETALA2/Ethylene Responsive Factors and their potential applications in crop improvement

2019 ◽  
Vol 18 (4) ◽  
pp. 240-254 ◽  
Author(s):  
Rajat Srivastava ◽  
Rahul Kumar
Keyword(s):  
Stress Responses ◽  
Regulatory Networks ◽  
Target Genes ◽  
Agronomic Traits ◽  
Crop Improvement ◽  
Plant Stress ◽  
Structural Features ◽  
Plant Responses ◽  
Ethylene Response Factor ◽  
Improvement Programs

AbstractUnderstanding the molecular basis of the gene-regulatory networks underlying agronomic traits or plant responses to abiotic/biotic stresses is very important for crop improvement. In this context, transcription factors, which either singularly or in conjugation directly control the expression of many target genes, are suitable candidates for improving agronomic traits via genetic engineering. In this regard, members of one of the largest class of plant-specific APETALA2/Ethylene Response Factor (AP2/ERF) superfamily, which is implicated in various aspects of development and plant stress adaptation responses, are considered high-value targets for crop improvement. Besides their long-known regulatory roles in mediating plant responses to abiotic stresses such as drought and submergence, the novel roles of AP2/ERFs during fruit ripening or secondary metabolites production have also recently emerged. The astounding functional plasticity of AP2/ERF members is considered to be achieved by their interplay with other regulatory networks and signalling pathways. In this review, we have integrated the recently accumulated evidence from functional genomics studies and described their newly emerged functions in plants. The key structural features of AP2/ERF proteins and the modes of their action are briefly summarized. The importance of AP2/ERFs in plant development and stress responses and a summary of the event of their successful applications in crop improvement programs are also provided. Altogether, we envisage that the synthesized information presented in this review will be useful to design effective strategies for improving agronomic traits in crop plants.

scholarly journals Broad and Complex Roles of NBR1-Mediated Selective Autophagy in Plant Stress Responses

Cells ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 2562
Author(s):  
Yan Zhang ◽  
Zhixiang Chen
Keyword(s):  
Stress Responses ◽  
Mammalian Cells ◽  
Plant Stress ◽  
Protein Aggregates ◽  
Degradation Pathway ◽  
Plant Responses ◽  
Stress Memory ◽  
Selective Autophagy ◽  
Cargo Proteins ◽  
Plant Stress Responses

Selective autophagy is a highly regulated degradation pathway for the removal of specific damaged or unwanted cellular components and organelles such as protein aggregates. Cargo selectivity in selective autophagy relies on the action of cargo receptors and adaptors. In mammalian cells, two structurally related proteins p62 and NBR1 act as cargo receptors for selective autophagy of ubiquitinated proteins including aggregation-prone proteins in aggrephagy. Plant NBR1 is the structural and functional homolog of mammalian p62 and NBR1. Since its first reports almost ten years ago, plant NBR1 has been well established to function as a cargo receptor for selective autophagy of stress-induced protein aggregates and play an important role in plant responses to a broad spectrum of stress conditions including heat, salt and drought. Over the past several years, important progress has been made in the discovery of specific cargo proteins of plant NBR1 and their roles in the regulation of plant heat stress memory, plant-viral interaction and special protein secretion. There is also new evidence for a possible role of NBR1 in stress-induced pexophagy, sulfur nutrient responses and abscisic acid signaling. In this review, we summarize these progresses and discuss the potential significance of NBR1-mediated selective autophagy in broad plant responses to both biotic and abiotic stresses.

scholarly journals Sensing stress responses in potato with whole-plant redox imaging

2021 ◽  
Author(s):  
Matanel Hipsch ◽  
Nardy Lampl ◽  
Einat Zelinger ◽  
Orel Barda ◽  
Daniel Waiger ◽  
...  
Keyword(s):  
Stress Responses ◽  
Agricultural Research ◽  
Plant Stress ◽  
Green Fluorescence Protein ◽  
Crop Productivity ◽  
Stress Sensitivity ◽  
High Light ◽  
Stress Conditions ◽  
Coping With Stress ◽  
Whole Plant

Abstract Environmental stresses are among the major factors that limit crop productivity and plant growth. Various nondestructive approaches for monitoring plant stress states have been developed. However, early sensing of the initial biochemical events during stress responses remains a significant challenge. In this work, we established whole-plant redox imaging using potato (Solanum tuberosum) plants expressing a chloroplast-targeted redox-sensitive green fluorescence protein 2 (roGFP2), which reports the glutathione redox potential (EGSH). Ratiometric imaging analysis demonstrated the probe response to redox perturbations induced by H2O2, DTT, or a GSH biosynthesis inhibitor. We mapped alteration in the chloroplast EGSH under several stress conditions including, high-light, cold and drought. An extremely high increase in chloroplast EGSH was observed under the combination of high-light and low temperatures, conditions that specifically induce PSI photoinhibition. Intriguingly, we noted a higher reduced state in newly developed compared to mature leaves under steady-state and stress conditions, suggesting a graded stress sensitivity as part of the plant strategies for coping with stress. The presented observations suggest that whole-plant redox imaging can serve as a powerful tool for the basic understanding of plant stress responses and applied agricultural research, such as toward improving phenotyping capabilities in breeding programs and early detection of stress responses in the field.

scholarly journals Function of Chloroplasts in Plant Stress Responses

2021 ◽  
Vol 22 (24) ◽  
pp. 13464
Author(s):  
Yun Song ◽  
Li Feng ◽  
Mohammed Abdul Muhsen Alyafei ◽  
Abdul Jaleel ◽  
Maozhi Ren
Keyword(s):  
Stress Responses ◽  
Plant Stress ◽  
Environmental Stresses ◽  
Stress Conditions ◽  
Oxygenic Photosynthesis ◽  
Central Position ◽  
Plant Responses ◽  
Primary Metabolism ◽  
Diverse Range ◽  
Biotic Stresses

The chloroplast has a central position in oxygenic photosynthesis and primary metabolism. In addition to these functions, the chloroplast has recently emerged as a pivotal regulator of plant responses to abiotic and biotic stress conditions. Chloroplasts have their own independent genomes and gene-expression machinery and synthesize phytohormones and a diverse range of secondary metabolites, a significant portion of which contribute the plant response to adverse conditions. Furthermore, chloroplasts communicate with the nucleus through retrograde signaling, for instance, reactive oxygen signaling. All of the above facilitate the chloroplast’s exquisite flexibility in responding to environmental stresses. In this review, we summarize recent findings on the involvement of chloroplasts in plant regulatory responses to various abiotic and biotic stresses including heat, chilling, salinity, drought, high light environmental stress conditions, and pathogen invasions. This review will enrich the better understanding of interactions between chloroplast and environmental stresses, and will lay the foundation for genetically enhancing plant-stress acclimatization.

scholarly journals Protein Prenylation in Plant Stress Responses

Molecules ◽  
2019 ◽  
Vol 24 (21) ◽  
pp. 3906 ◽  
Author(s):  
Michal Hála ◽  
Viktor Žárský
Keyword(s):  
Posttranslational Modifications ◽  
Stress Responses ◽  
Lipid Membrane ◽  
Plant Stress ◽  
Small Gtpases ◽  
Plant Responses ◽  
Protein Prenylation ◽  
Biotic Stresses ◽  
Plant Stress Responses ◽  
As Stress

Protein prenylation is one of the most important posttranslational modifications of proteins. Prenylated proteins play important roles in different developmental processes as well as stress responses in plants as the addition of hydrophobic prenyl chains (mostly farnesyl or geranyl) allow otherwise hydrophilic proteins to operate as peripheral lipid membrane proteins. This review focuses on selected aspects connecting protein prenylation with plant responses to both abiotic and biotic stresses. It summarizes how changes in protein prenylation impact plant growth, deals with several families of proteins involved in stress response and highlights prominent regulatory importance of prenylated small GTPases and chaperons. Potential possibilities of these proteins to be applicable for biotechnologies are discussed.

scholarly journals Coordination and Crosstalk between Autophagosome and Multivesicular Body Pathways in Plant Stress Responses

Cells ◽  
2020 ◽  
Vol 9 (1) ◽  
pp. 119 ◽  
Author(s):  
Mengxue Wang ◽  
Xifeng Li ◽  
Shuwei Luo ◽  
Baofang Fan ◽  
Cheng Zhu ◽  
...  
Keyword(s):  
Stress Responses ◽  
Plant Stress ◽  
Multivesicular Body ◽  
Endocytic Pathway ◽  
Plant Responses ◽  
Hormone Metabolism ◽  
Plant Stress Responses ◽  
Autophagic Degradation ◽  
Membrane Bound ◽  
Vacuolar Protein

In eukaryotic cells, autophagosomes and multivesicular bodies (MVBs) are two closely related partners in the lysosomal/vacuolar protein degradation system. Autophagosomes are double membrane-bound organelles that transport cytoplasmic components, including proteins and organelles for autophagic degradation in the lysosomes/vacuoles. MVBs are single-membrane organelles in the endocytic pathway that contain intraluminal vesicles whose content is either degraded in the lysosomes/vacuoles or recycled to the cell surface. In plants, both autophagosome and MVB pathways play important roles in plant responses to biotic and abiotic stresses. More recent studies have revealed that autophagosomes and MVBs also act together in plant stress responses in a variety of processes, including deployment of defense-related molecules, regulation of cell death, trafficking and degradation of membrane and soluble constituents, and modulation of plant hormone metabolism and signaling. In this review, we discuss these recent findings on the coordination and crosstalk between autophagosome and MVB pathways that contribute to the complex network of plant stress responses.

scholarly journals Strawberry WRKY Transcription Factor WRKY50 Is Required for Resistance to Necrotrophic Fungal Pathogen Botrytis cinerea

Agronomy ◽  
2021 ◽  
Vol 11 (12) ◽  
pp. 2377
Author(s):  
Chuangju Ma ◽  
Jinsong Xiong ◽  
Morong Liang ◽  
Xiaoyu Liu ◽  
Xiaodong Lai ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Botrytis Cinerea ◽  
Stress Responses ◽  
Protein Biosynthesis ◽  
Plant Stress ◽  
Wrky Transcription Factor ◽  
Antimicrobial Protein ◽  
Strawberry Fruit ◽  
Wrky Protein ◽  
Plant Stress Responses

WRKY protein is one of the largest plant-specific transcription factors that plays critical roles in plant stress responses, but few WRKY transcription factors have been functionally analyzed in strawberry. In this study, a Botrytis cinerea response WRKY gene, FvWRKY50, was isolated from the woodland strawberry. Expression analysis indicated that the transcript of FvWRKY50 was gradually decreased with fruit ripening, but was significantly induced by B. cinerea infection in mature strawberry fruit. Subcellular localization assay revealed that FvWRKY50 was localized in the nucleus. Several cis-elements related to pathogen responses were observed in the promoter region of FvWRKY50. Pathogen infection assay indicated that overexpression of FvWRKY50 in strawberry fruit significantly enhanced their resistance against B. cinerea, while the silencing of FvWRKY50 dramatically compromised their disease-resistant ability. The expression levels of several genes involved in jasmonic acid (JA) biosynthesis, signaling transduction, and antimicrobial protein biosynthesis were regulated to diverse extents in FvWRKY50 overexpressed and silenced fruit. Collectively, our study inferred that FvWRKY50 is a positive regulator that mediates resistance against B. cinerea through regulating some JA pathway and defense-related genes.

scholarly journals Roles of Endogenous Melatonin in Resistance to Botrytis cinerea Infection in an Arabidopsis Model

2021 ◽  
Vol 12 ◽  
Author(s):  
Ying Zhu ◽  
Miao-Jie Guo ◽  
Jian-Bo Song ◽  
Shu-Yuan Zhang ◽  
Rui Guo ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Botrytis Cinerea ◽  
Genetic Manipulation ◽  
Marker Gene ◽  
Plant Stress ◽  
Pathogen Resistance ◽  
Schematic Model ◽  
Transcription Factor Gene ◽  
Factor Gene ◽  
Endogenous Melatonin

Melatonin is an important bioactive molecule in plants. Two synthetases, N-acetylserotonin methyltransferase (ASMT) and serotonin N-acetyltransferase (SNAT) are involved in the final two steps of melatonin synthesis. Melatonin participates in responses to a variety of biotic and abiotic stresses in plants, but few studies have addressed the roles of endogenous melatonin in pathogen resistance. We investigated the role of endogenous melatonin in resistance to Botrytis cinerea infection in an Arabidopsis thaliana model system. Plant lines that overexpressed ASMT or SNAT through genetic manipulation showed upregulated expression of resistance genes PR1 and PR5, transcription factor gene WRKY33, and jasmonic acid (JA) defense pathway marker gene PDF1.2, and downregulated transcription factor gene MYC2 in JA signaling pathway. Higher melatonin content also enhanced the activity of antioxidant enzymes superoxide dismutase (SOD) and peroxidase (POD), increased JA content, reduced plant disease symptoms, and reduced lesion size in leaves. These findings indicate that endogenous melatonin enhances plant resistance to B. cinerea infection. In contrast, ASMT and SNAT gene silencing lines showed opposite results and were more susceptible to B. cinerea. Thus, it can be demonstrated that melatonin functions as an effective regulator of plant stress resistance at the genetic level. A schematic model is presented for its role in resistance to B. cinerea infection. Our findings also helped to elucidate the associated signal transduction pathways and interactions between melatonin and other plant hormones.

scholarly journals High-throughput profiling and analysis of plant responses over time to abiotic stress

2017 ◽  
Author(s):  
Kira M. Veley ◽  
Jeffrey C. Berry ◽  
Sarah J. Fentress ◽  
Daniel P. Schachtman ◽  
Ivan Baxter ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
High Throughput ◽  
Stress Responses ◽  
Low Cost ◽  
Abiotic Stress Tolerance ◽  
Crop Improvement ◽  
Plant Responses ◽  
Nitrogen Deprivation ◽  
Plant Nitrogen ◽  
Over Time

ABSTRACTSorghum (Sorghum bicolor (L.) Moench) is a rapidly growing, high-biomass crop prized for abiotic stress tolerance. However, measuring genotype-by-environment (G × E) interactions remains a progress bottleneck. Here we describe strategies for identifying shape, color and ionomic indicators of plant nitrogen use efficiency. We subjected a panel of 30 genetically diverse sorghum genotypes to a spectrum of nitrogen deprivation and measured responses using high-throughput phenotyping technology followed by ionomic profiling. Responses were quantified using shape (16 measurable outputs), color (hue and intensity) and ionome (18 elements). We measured the speed at which specific genotypes respond to environmental conditions, both in terms of biomass and color changes, and identified individual genotypes that perform most favorably. With this analysis we present a novel approach to quantifying color-based stress indicators over time. Additionally, ionomic profiling was conducted as an independent, low cost and high throughput option for characterizing G × E, identifying the elements most affected by either genotype or treatment and suggesting signaling that occurs in response to the environment. This entire dataset and associated scripts are made available through an open access, user-friendly, web-based interface. In summary, this work provides analysis tools for visualizing and quantifying plant abiotic stress responses over time. These methods can be deployed as a time-efficient method of dissecting the genetic mechanisms used by sorghum to respond to the environment to accelerate crop improvement.

scholarly journals Arabidopsis Ubiquitin-Conjugating Enzymes UBC7, UBC13, and UBC14 Are Required in Plant Responses to Multiple Stress Conditions

Plants ◽  
2020 ◽  
Vol 9 (6) ◽  
pp. 723
Author(s):  
Hui Feng ◽  
Sheng Wang ◽  
Dengfeng Dong ◽  
Ruiyang Zhou ◽  
Hong Wang
Keyword(s):  
Stress Responses ◽  
Plant Stress ◽  
Normal Growth ◽  
Stress Sensitivity ◽  
Stress Conditions ◽  
Plant Responses ◽  
Multiple Stress ◽  
Protein Ubiquitination ◽  
E2 Enzymes ◽  
Erad Pathway

Protein ubiquitination plays important roles in plants, including stress responses. The ubiquitin (Ub) E2 enzymes are required in the transfer of Ub to a substrate and are also important in determining the Ub-chain linkage specificity. However, for many of the 37 E2 genes in Arabidopsis thaliana, there is currently little or no understanding of their functions. In this study, we investigated three members of an E2 subfamily. The single, double, and triple mutants of UBC7, UBC13, and UBC14 did not show any phenotypic changes under normal conditions, but were more sensitive than the wild-type (WT) plants to multiple stress conditions, suggesting that the three genes are not critical for normal growth, but required in plant stress responses. The severity of the phenotypes increased from single to triple mutants, suggesting that the functions of the three genes are not completely redundant. The three E2s are closely related to the yeast Ubc7 and its homologs in animals and human, which are an important component of the endoplasmic reticulum (ER)-associated degradation (ERAD) pathway. The stress sensitivity phenotypes of the mutants and shared evolutionary root with the Ubc7 homologs in yeast and metazoans suggest that UBC7, UBC13, and UBC14 may function in the plant ERAD pathway.

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