scholarly journals Effect of Long-Term Fertilization on Ammonia-Oxidizing Microorganisms and Nitrification in Brown Soil of Northeast China

2021 ◽  
Vol 11 ◽  
Author(s):  
Fangfang Cai ◽  
Peiyu Luo ◽  
Jinfeng Yang ◽  
Muhammad Irfan ◽  
Shiyu Zhang ◽  
...  
Keyword(s):  
High Throughput Sequencing ◽  
Ammonia Oxidation ◽  
Dominant Role ◽  
Soil Phosphorus ◽  
Chemical Properties ◽  
Available Phosphorus ◽  
Ammonia Oxidizing Bacteria ◽  
Nitrogen And Phosphorus ◽  
Ammonia Oxidizing Archaea

The objective of this study was to find out changes in ammonia oxidation microorganisms with respect to fertilizer as investigated by real-time polymerase chain reaction and high-throughput sequencing. The treatments included control (CK); chemical fertilizer nitrogen low (N) and high (N2); nitrogen and phosphorus (NP); nitrogen phosphorus and potassium (NPK) and organic manure fertilizer (M); MN; MN2; MNPK. The results showed that long-term fertilization influenced soil fertility and affected the abundance and community of ammonia-oxidizing microorganisms by changing the physical and chemical properties of the soil. The abundance and community structure of ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) was influenced by soil organic carbon, total nitrogen, total soil phosphorus, available phosphorus, available potassium, and soil nitrate. Soil environmental factors affected the nitrification potential by affecting the structure of ammonia-oxidizing microorganisms; specific and rare AOA and AOB rather than the whole AOA or AOB community played dominant role in nitrification.

scholarly journals Ammonia-oxidizing Archaea (AOA) are Winners to Survive in Oxygen-limited Habitat Compared to Ammonia-oxidizing Bacteria (AOB)

2021 ◽  
Author(s):  
Peigang Dai ◽  
Wenjing Song ◽  
Zhao Che ◽  
Lili Zhang ◽  
Zhaorong Dong
Keyword(s):  
Intertidal Zone ◽  
High Throughput Sequencing ◽  
Ammonia Oxidation ◽  
Illumina Miseq ◽  
Gene Copy ◽  
Ammonia Oxidizing Bacteria ◽  
Niche Specialization ◽  
Ammonia Oxidizing Archaea ◽  
Copy Numbers ◽  
Oxidation Reduction

Abstract Purpose: Both ammonia oxidizing archaea (AOA) and bacteria (AOB) perform the ammonia oxidation together. These two kinds of microbes present a convenient model for studying niche specialization. To date, few surveys concentrated on the influence of oxygen concentration on niche specialization of AOA and AOB in intertidal zones. Methods: Here, high-throughput sequencing by Illumina MiSeq and qPCR were applied to detect the change of abundance, diversity as well as community structure of both AOA and AOB with 0-60 cm sediments depth in the intertidal zone in Qingdao.Results and Conclusion: The AOA/AOB amoA gene copy numbers and AOA/AOB OTU numbers were all increased as sediment depth went deeper, which indicated that AOA were more adaptive to oxygen-limited niches compared to AOB and oxygen indeed led to the niche specialization of AOA and AOB in intertidal sediments. The dominant AOA and AOB were the Nitrosopumilus and Nitrosospira clusters, respectively, which indicated an ecological success in intertidal zone. Oxidation-reduction potential (ORP) was significantly positively correlated with AOB abundance and AOB OTU numbers (P < 0.01). In addition, both TN (P < 0.01) and pH (P < 0.05) were significantly and negatively correlated with AOB abundance. TN was also significantly and negatively correlated with AOB OTU numbers (P < 0.05).

scholarly journals Soil ammonia-oxidizing archaea in a paddy field with different irrigation and fertilization managements

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Limin Wang ◽  
Dongfeng Huang
Keyword(s):  
Ammonia Oxidation ◽  
Chemical Properties ◽  
Paddy Soils ◽  
Soil Nitrification ◽  
Treated Soil ◽  
Ammonia Oxidizing Archaea ◽  
Rice Yields ◽  
Traditional Irrigation ◽  
Almost All ◽  
And Function

AbstractBecause ammonia-oxidizing archaea (AOA) are ubiquitous and highly abundant in almost all terrestrial soils, they play an important role in soil nitrification. However, the changes in the structure and function of AOA communities and their edaphic drivers in paddy soils under different fertilization and irrigation regimes remain unclear. In this study, we investigated AOA abundance, diversity and activity in acid paddy soils by a field experiment. Results indicated that the highest potential ammonia oxidation (PAO) (0.011 μg NO 2 -  –N g-1 d.w.day-1) was found in T2 (optimal irrigation and fertilization)—treated soils, whereas the lowest PAO (0.004 μg NO 2 -  –N g-1 d.w.day-1) in T0 (traditional irrigation)- treated soils. Compared with the T0—treated soil, the T2 treatment significantly (P < 0.05) increased AOA abundances. Furthermore, the abundance of AOA was significantly (P < 0.01) positively correlated with pH, soil organic carbon (SOC), and PAO. Meanwhile, pH and SOC content were significantly (P < 0.05) higher in the T2—treated soil than those in the T1 (traditional irrigation and fertilization)- treated soil. In addition, these two edaphic factors further influenced the AOA community composition. The AOA phylum Crenarchaeota was mainly found in the T2—treated soils. Phylogenetic analysis revealed that most of the identified OTUs of AOA were mainly affiliated with Crenarchaeota. Furthermore, the T2 treatment had higher rice yield than the T0 and T1 treatments. Together, our findings confirm that T2 might ameliorate soil chemical properties, regulate the AOA community structure, increase the AOA abundance, enhance PAO and consequently maintain rice yields in the present study.

scholarly journals Does the Mixture of Species change the C:N:P Ecological Stoichiometric Characteristics of fine Roots? A Case Study of Cupressus Funebris Mixed Forest

2021 ◽  
Author(s):  
Wenchun He ◽  
Yang Wang ◽  
Xiaochen Wen ◽  
Yu Wang ◽  
Baoru Xiao ◽  
...  
Keyword(s):  
Fine Roots ◽  
Environmental Changes ◽  
Mixed Forest ◽  
Chemical Properties ◽  
Available Phosphorus ◽  
Biological Factors ◽  
Nitrogen And Phosphorus ◽  
Mixed Stands ◽  
Available Nitrogen ◽  
Low Efficiency

Abstract The growth of fine roots of trees is affected by environmental changes and biological factors. At present, there have been many researches on the physiological plasticity of fine roots caused by environmental changes, but there are still few studies on the influence of biological factors on fine roots. This paper focused on the contents of carbon (C), nitrogen (N), and phosphorus (P), and their ecological stoichiometric ratios in different root orders of Cupressus funebris fine roots in 11 mixed stands with Koelreuteria paniculate or Toona sinensis at different ratios, and the effects of soil physical and chemical properties on the root chemical properties. It aimed to provide new insights into the fine-root nutrient distribution pattern and the transformation or reconstruction of low-efficiency pure forests from the standpoint of forest types. The results showed that: soil pH, and the content of available nitrogen (SAN), available phosphorus (SAP) and available potassium (SAK) differed significantly in the tested mixed forest stands. No significant differences in carbon content of fine roots were observed in different mixed stands. The content of nitrogen and phosphorus in fine roots in mixed forests showed heterogeneity. Species mixing changed the C/N, C/P and N/P of the C. funebris compared the pure stands. The "T. sinensis + C. funebris" forest alleviated the limitation of the lack of phosphorus on fine roots of C. funebris on. The principal component analysis showed that mixed stands of "T. sinensis + C. funebris" had the highest comprehensive score at ratio of "3:1". Thus, our results recommended the adoption of T. sinensis, especially at 75%, to reconstruct the low-efficiency pure C. funebris forest.

scholarly journals Measurements of nitrite production in and around the primary nitrite maximum in the central California Current

2013 ◽  
Vol 10 (11) ◽  
pp. 7395-7410 ◽  
Author(s):  
A. E. Santoro ◽  
C. M. Sakamoto ◽  
J. M. Smith ◽  
J. N. Plant ◽  
A. L. Gehman ◽  
...  
Keyword(s):  
Ammonia Oxidation ◽  
Heterotrophic Bacteria ◽  
California Current ◽  
Euphotic Zone ◽  
Ammonia Oxidizing Bacteria ◽  
Central California ◽  
Oxidation Rates ◽  
Ammonia Oxidizing Archaea ◽  
Nitrite Production ◽  
Nh3 Oxidation

Abstract. Nitrite (NO2−) is a substrate for both oxidative and reductive microbial metabolism. NO2− accumulates at the base of the euphotic zone in oxygenated, stratified open-ocean water columns, forming a feature known as the primary nitrite maximum (PNM). Potential pathways of NO2− production include the oxidation of ammonia (NH3) by ammonia-oxidizing bacteria and archaea as well as assimilatory nitrate (NO3−) reduction by phytoplankton and heterotrophic bacteria. Measurements of NH3 oxidation and NO3− reduction to NO2− were conducted at two stations in the central California Current in the eastern North Pacific to determine the relative contributions of these processes to NO2− production in the PNM. Sensitive (< 10 nmol L−1), precise measurements of [NH4+] and [NO2−] indicated a persistent NH4+ maximum overlying the PNM at every station, with concentrations as high as 1.5 μmol L−1. Within and just below the PNM, NH3 oxidation was the dominant NO2− producing process, with rates of NH3 oxidation to NO2− of up to 31 nmol L−1 d−1, coinciding with high abundances of ammonia-oxidizing archaea. Though little NO2− production from NO3− was detected, potentially nitrate-reducing phytoplankton (photosynthetic picoeukaryotes, Synechococcus, and Prochlorococcus) were present at the depth of the PNM. Rates of NO2− production from NO3− were highest within the upper mixed layer (4.6 nmol L−1 d−1) but were either below detection limits or 10 times lower than NH3 oxidation rates around the PNM. One-dimensional modeling of water column NO2− production agreed with production determined from 15N bottle incubations within the PNM, but a modeled net biological sink for NO2− just below the PNM was not captured in the incubations. Residence time estimates of NO2− within the PNM ranged from 18 to 470 days at the mesotrophic station and was 40 days at the oligotrophic station. Our results suggest the PNM is a dynamic, rather than relict, feature with a source term dominated by ammonia oxidation.

scholarly journals Three Invasive Tree Species Change Soil Chemistry in Guam Forests

Forests ◽  
2020 ◽  
Vol 11 (3) ◽  
pp. 279 ◽  
Author(s):  
Thomas E. Marler
Keyword(s):  
Tree Species ◽  
Soil Chemistry ◽  
Chemical Properties ◽  
Total Carbon ◽  
Tree Cover ◽  
Available Phosphorus ◽  
Nitrogen And Phosphorus ◽  
Invasive Tree ◽  
Invasive Tree Species ◽  
Forms Of Carbon

Research Highlights: Established stands of Leucaena leucocephala (Lam.) de Wit, Spathodea campanulata P. Beauv., and Vitex parviflora Juss. modified soils in Guam’s limestone forests, reducing storage pools of carbon, nitrogen, and phosphorus. Background and Objectives: Invasive plants may engineer negative changes in ecosystem properties. This study was conducted to determine changes in soil chemistry following infestations of three problematic tree species on Guam. Materials and Methods: Minerals, metals, and mineralization dynamics were measured in invaded sites and paired sites with biodiverse native tree cover. Results: Most soil properties were significantly changed by long-term infestations of the invasive tree species. The soils within invaded sites exhibited total carbon, total nitrogen, and available phosphorus that were less than native sites. In contrast, the carbon/nitrogen ratio increased for every species-site combination. The other chemical properties were idiosyncratic among the sites and species. Conclusions: Mitigation and restoration activities that include the removal of these trees from project sites may require many years for the below-ground ecosystems to return to their native state. These three invasive trees decrease the ability of Guam soils to sequester recalcitrant forms of carbon, nitrogen, and phosphorus.

Isotopic Signature of N2O Produced by Marine Ammonia-Oxidizing Archaea

Science ◽  
2011 ◽  
Vol 333 (6047) ◽  
pp. 1282-1285 ◽  
Author(s):  
Alyson E. Santoro ◽  
Carolyn Buchwald ◽  
Matthew R. McIlvin ◽  
Karen L. Casciotti
Keyword(s):  
Ammonia Oxidation ◽  
Stratospheric Ozone ◽  
Isotopic Signature ◽  
Primary Sources ◽  
Ammonia Oxidizing Bacteria ◽  
Isotopic Signatures ◽  
Ozone Destruction ◽  
Ammonia Oxidizing Archaea ◽  
Isotope Measurements ◽  
Archaeal Ammonia Oxidation

The ocean is an important global source of nitrous oxide (N2O), a greenhouse gas that contributes to stratospheric ozone destruction. Bacterial nitrification and denitrification are thought to be the primary sources of marine N2O, but the isotopic signatures of N2O produced by these processes are not consistent with the marine contribution to the global N2O budget. Based on enrichment cultures, we report that archaeal ammonia oxidation also produces N2O. Natural-abundance stable isotope measurements indicate that the produced N2O had bulk δ15N and δ18O values higher than observed for ammonia-oxidizing bacteria but similar to the δ15N and δ18O values attributed to the oceanic N2O source to the atmosphere. Our results suggest that ammonia-oxidizing archaea may be largely responsible for the oceanic N2O source.

Effects of long-term bare fallow during the winter-wheat growth season on the soil chemical properties, fungal community composition and the occurrence of maize fungal diseases in North China

Plant Disease ◽  
2021 ◽  
Author(s):  
Yajiao Wang ◽  
Lijing Ji ◽  
Qiusheng Li ◽  
yu xing wu ◽  
Congcong Li ◽  
...  
Keyword(s):  
Winter Wheat ◽  
Fungal Community ◽  
Chemical Properties ◽  
Soil Chemical Properties ◽  
Fungal Community Composition ◽  
Nitrogen And Phosphorus ◽  
Growth Season ◽  
Available Nitrogen ◽  
Bare Fallow

On the North China Plain, one of the most water-deficient regions in China, bare fallow has been implemented over a large-scale area to conserve water during the growth season of water-intensive winter wheat since 2015. However, the effects of this bare fallow on fungal community and the occurrence of crop diseases are poorly understood. Here we measured soil chemical properties, fungal community composition and the occurrence of crop diseases after 15 years of long-term fallow (continuous maize or soybean) and non-fallow (maize-wheat rotation; soybean-wheat rotation) cropping systems. Bare fallow during the winter-wheat growth season significantly decreased soil organic matter, available nitrogen and phosphorus. It also changed the composition of soil fungal communities, i.e., increased relative abundances of some potentially pathogenic species of Lectera, Fusarium and Volutella but decreased beneficial Cladorrhium and Schizothecium. Meanwhile, the epidemic tendency of maize diseases changed correspondingly: the disease index of southern corn leaf blight and maize brown spot increased, but the incidence of stalk rot decreased compared with the non-fallow system. Soybean diseases were very mild regardless of the cropping system during the total experimental period. Network analysis demonstrated that the soil fungal diversity associated with maize diseases was affected by the decreased soil organic matter and available nitrogen and phosphorus. Our results suggest that bare fallow in winter-wheat season affected the soil chemical properties, fungal community and the occurrence of maize fungal diseases.

scholarly journals Ecophysiological Characterization of Ammonia-Oxidizing Archaea and Bacteria from Freshwater

2012 ◽  
Vol 78 (16) ◽  
pp. 5773-5780 ◽  
Author(s):  
Elizabeth French ◽  
Jessica A. Kozlowski ◽  
Maitreyee Mukherjee ◽  
George Bullerjahn ◽  
Annette Bollmann
Keyword(s):  
Growth Rates ◽  
Ammonia Oxidation ◽  
Light Exposure ◽  
Enrichment Culture ◽  
Ammonia Oxidizing Bacteria ◽  
Content Type ◽  
Ammonia Oxidizing Archaea ◽  
Group I ◽  
Nitrosomonas Oligotropha

ABSTRACTAerobic biological ammonia oxidation is carried out by two groups of microorganisms, ammonia-oxidizing bacteria (AOB) and the recently discovered ammonia-oxidizing archaea (AOA). Here we present a study using cultivation-based methods to investigate the differences in growth of three AOA cultures and one AOB culture enriched from freshwater environments. The strain in the enriched AOA culture belong to thaumarchaeal group I.1a, with the strain in one enrichment culture having the highest identity with “CandidatusNitrosoarchaeum koreensis” and the strains in the other two representing a new genus of AOA. The AOB strain in the enrichment culture was also obtained from freshwater and had the highest identity to AOB from theNitrosomonas oligotrophagroup (Nitrosomonascluster 6a). We investigated the influence of ammonium, oxygen, pH, and light on the growth of AOA and AOB. The growth rates of the AOB increased with increasing ammonium concentrations, while the growth rates of the AOA decreased slightly. Increasing oxygen concentrations led to an increase in the growth rate of the AOB, while the growth rates of AOA were almost oxygen insensitive. Light exposure (white and blue wavelengths) inhibited the growth of AOA completely, and the AOA did not recover when transferred to the dark. AOB were also inhibited by blue light; however, growth recovered immediately after transfer to the dark. Our results show that the tested AOB have a competitive advantage over the tested AOA under most conditions investigated. Further experiments will elucidate the niches of AOA and AOB in more detail.

scholarly journals Nitrification mainly driven by ammonia-oxidizing bacteria and nitrite-oxidizing bacteria in an anammox-inoculated wastewater treatment system

AMB Express ◽  
2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Jing Lu ◽  
Yiguo Hong ◽  
Ying Wei ◽  
Ji-Dong Gu ◽  
Jiapeng Wu ◽  
...  
Keyword(s):  
Wastewater Treatment ◽  
Activated Sludge ◽  
Nitrogen Removal ◽  
High Throughput Sequencing ◽  
High Efficiency ◽  
Ammonia Oxidation ◽  
Ammonia Oxidizing Bacteria ◽  
Ammonium Oxidation ◽  
Strong Activity ◽  
Nitrite Oxidizing Bacteria

AbstractAnaerobic ammonium oxidation (anammox) process has been acknowledged as an environmentally friendly and time-saving technique capable of achieving efficient nitrogen removal. However, the community of nitrification process in anammox-inoculated wastewater treatment plants (WWTPs) has not been elucidated. In this study, ammonia oxidation (AO) and nitrite oxidation (NO) rates were analyzed with the incubation of activated sludge from Xinfeng WWTPs (Taiwan, China), and the community composition of nitrification communities were investigated by high-throughput sequencing. Results showed that both AO and NO had strong activity in the activated sludge. The average rates of AO and NO in sample A were 6.51 µmol L−1 h−1 and 6.52 µmol L−1 h−1, respectively, while the rates in sample B were 14.48 µmol L−1 h−1 and 14.59 µmol L−1 h−1, respectively. The abundance of the nitrite-oxidizing bacteria (NOB) Nitrospira was 0.89–4.95 × 1011 copies/g in both samples A and B, the abundance of ammonia-oxidizing bacteria (AOB) was 1.01–9.74 × 109 copies/g. In contrast, the abundance of ammonia-oxidizing archaea (AOA) was much lower than AOB, only with 1.28–1.53 × 105 copies/g in samples A and B. The AOA community was dominated by Nitrosotenuis, Nitrosocosmicus, and Nitrososphaera, while the AOB community mainly consisted of Nitrosomonas and Nitrosococcus. The dominant species of Nitrospira were Candidatus Nitrospira defluvii, Candidatus Nitrospira Ecomare2 and Nitrospira inopinata. In summary, the strong nitrification activity was mainly catalyzed by AOB and Nitrospira, maintaining high efficiency in nitrogen removal in the anammox-inoculated WWTPs by providing the substrates required for denitrification and anammox processes.

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