scholarly journals Machine Learning-Based Prediction of Air Quality

2020 ◽  
Vol 10 (24) ◽  
pp. 9151
Author(s):  
Yun-Chia Liang ◽  
Yona Maimury ◽  
Angela Hsiang-Ling Chen ◽  
Josue Rodolfo Cuevas Juarez
Keyword(s):  
Machine Learning ◽  
Air Quality ◽  
Random Forest ◽  
Prediction Models ◽  
Superior Performance ◽  
Support Vector ◽  
Economic Activities ◽  
Adaptive Boosting ◽  
Series Of Experiments ◽  
Artificial Neural Network Ann

Air, an essential natural resource, has been compromised in terms of quality by economic activities. Considerable research has been devoted to predicting instances of poor air quality, but most studies are limited by insufficient longitudinal data, making it difficult to account for seasonal and other factors. Several prediction models have been developed using an 11-year dataset collected by Taiwan’s Environmental Protection Administration (EPA). Machine learning methods, including adaptive boosting (AdaBoost), artificial neural network (ANN), random forest, stacking ensemble, and support vector machine (SVM), produce promising results for air quality index (AQI) level predictions. A series of experiments, using datasets for three different regions to obtain the best prediction performance from the stacking ensemble, AdaBoost, and random forest, found the stacking ensemble delivers consistently superior performance for R2 and RMSE, while AdaBoost provides best results for MAE.

scholarly journals Feature Selection and Comparison of Machine Learning Algorithms in Classification of Grazing and Rumination Behaviour in Sheep

Sensors ◽  
2018 ◽  
Vol 18 (10) ◽  
pp. 3532 ◽  
Author(s):  
Nicola Mansbridge ◽  
Jurgen Mitsch ◽  
Nicola Bollard ◽  
Keith Ellis ◽  
Giuliana Miguel-Pacheco ◽  
...  
Keyword(s):  
Machine Learning ◽  
Random Forest ◽  
Time Budget ◽  
Learning Algorithms ◽  
Eating Behaviour ◽  
Machine Learning Algorithms ◽  
Support Vector ◽  
Optimum Number ◽  
Eating Behaviours ◽  
Adaptive Boosting

Grazing and ruminating are the most important behaviours for ruminants, as they spend most of their daily time budget performing these. Continuous surveillance of eating behaviour is an important means for monitoring ruminant health, productivity and welfare. However, surveillance performed by human operators is prone to human variance, time-consuming and costly, especially on animals kept at pasture or free-ranging. The use of sensors to automatically acquire data, and software to classify and identify behaviours, offers significant potential in addressing such issues. In this work, data collected from sheep by means of an accelerometer/gyroscope sensor attached to the ear and collar, sampled at 16 Hz, were used to develop classifiers for grazing and ruminating behaviour using various machine learning algorithms: random forest (RF), support vector machine (SVM), k nearest neighbour (kNN) and adaptive boosting (Adaboost). Multiple features extracted from the signals were ranked on their importance for classification. Several performance indicators were considered when comparing classifiers as a function of algorithm used, sensor localisation and number of used features. Random forest yielded the highest overall accuracies: 92% for collar and 91% for ear. Gyroscope-based features were shown to have the greatest relative importance for eating behaviours. The optimum number of feature characteristics to be incorporated into the model was 39, from both ear and collar data. The findings suggest that one can successfully classify eating behaviours in sheep with very high accuracy; this could be used to develop a device for automatic monitoring of feed intake in the sheep sector to monitor health and welfare.

scholarly journals Classification models using circulating neutrophil transcripts can detect unruptured intracranial aneurysm

2020 ◽  
Vol 18 (1) ◽  
Author(s):  
Kerry E. Poppenberg ◽  
Vincent M. Tutino ◽  
Lu Li ◽  
Muhammad Waqas ◽  
Armond June ◽  
...  
Keyword(s):  
Machine Learning ◽  
Random Forest ◽  
Prediction Models ◽  
Model Performance ◽  
Supervised Machine Learning ◽  
Support Vector ◽  
Learning Methods ◽  
Training Cohort ◽  
Network Analyses ◽  
Machine Learning Methods

Abstract Background Intracranial aneurysms (IAs) are dangerous because of their potential to rupture. We previously found significant RNA expression differences in circulating neutrophils between patients with and without unruptured IAs and trained machine learning models to predict presence of IA using 40 neutrophil transcriptomes. Here, we aim to develop a predictive model for unruptured IA using neutrophil transcriptomes from a larger population and more robust machine learning methods. Methods Neutrophil RNA extracted from the blood of 134 patients (55 with IA, 79 IA-free controls) was subjected to next-generation RNA sequencing. In a randomly-selected training cohort (n = 94), the Least Absolute Shrinkage and Selection Operator (LASSO) selected transcripts, from which we constructed prediction models via 4 well-established supervised machine-learning algorithms (K-Nearest Neighbors, Random Forest, and Support Vector Machines with Gaussian and cubic kernels). We tested the models in the remaining samples (n = 40) and assessed model performance by receiver-operating-characteristic (ROC) curves. Real-time quantitative polymerase chain reaction (RT-qPCR) of 9 IA-associated genes was used to verify gene expression in a subset of 49 neutrophil RNA samples. We also examined the potential influence of demographics and comorbidities on model prediction. Results Feature selection using LASSO in the training cohort identified 37 IA-associated transcripts. Models trained using these transcripts had a maximum accuracy of 90% in the testing cohort. The testing performance across all methods had an average area under ROC curve (AUC) = 0.97, an improvement over our previous models. The Random Forest model performed best across both training and testing cohorts. RT-qPCR confirmed expression differences in 7 of 9 genes tested. Gene ontology and IPA network analyses performed on the 37 model genes reflected dysregulated inflammation, cell signaling, and apoptosis processes. In our data, demographics and comorbidities did not affect model performance. Conclusions We improved upon our previous IA prediction models based on circulating neutrophil transcriptomes by increasing sample size and by implementing LASSO and more robust machine learning methods. Future studies are needed to validate these models in larger cohorts and further investigate effect of covariates.

scholarly journals Glass Classification based on Machine Learning Algorithms

2020 ◽  
Vol 9 (11) ◽  
pp. 139-142
Keyword(s):  
Machine Learning ◽  
Random Forest ◽  
Amorphous Solid ◽  
Machine Learning Algorithms ◽  
Support Vector ◽  
K Nearest Neighbors ◽  
X Ray ◽  
Svm Algorithm ◽  
Artificial Neural Network Ann ◽  
Logistic Regression Algorithm

Glass Industry is considered one of the most important industries in the world. The Glass is used everywhere, from water bottles to X-Ray and Gamma Rays protection. This is a non-crystalline, amorphous solid that is most often transparent. There are lots of uses of glass, and during investigation in a crime scene, the investigators need to know what is type of glass in a scene. To find out the type of glass, we will use the online dataset and machine learning to solve the above problem. We will be using ML algorithms such as Artificial Neural Network (ANN), K-nearest neighbors (KNN) algorithm, Support Vector Machine (SVM) algorithm, Random Forest algorithm, and Logistic Regression algorithm. By comparing all the algorithm Random Forest did the best in glass classification.

scholarly journals rSeqTU – a machine-learning based R package for prediction of bacterial transcription units

2019 ◽  
Author(s):  
Sheng-Yong Niu ◽  
Binqiang Liu ◽  
Qin Ma ◽  
Wen-Chi Chou
Keyword(s):  
Machine Learning ◽  
Random Forest ◽  
Regulatory Networks ◽  
Prediction Models ◽  
R Package ◽  
Transcription Unit ◽  
Support Vector ◽  
Rna Seq ◽  
Accurate Identification ◽  
Prediction Approach

AbstractA transcription unit (TU) is composed of one or multiple adjacent genes on the same strand that are co-transcribed in mostly prokaryotes. Accurate identification of TUs is a crucial first step to delineate the transcriptional regulatory networks and elucidate the dynamic regulatory mechanisms encoded in various prokaryotic genomes. Many genomic features, e.g., gene intergenic distance, and transcriptomic features including continuous and stable RNA-seq reads count signals, have been collected from a large amount of experimental data and integrated into classification techniques to computationally predict genome-wide TUs. Although some tools and web servers are able to predict TUs based on bacterial RNA-seq data and genome sequences, there is a need to have an improved machine-learning prediction approach and a better comprehensive pipeline handling QC, TU prediction, and TU visualization. To enable users to efficiently perform TU identification on their local computers or high-performance clusters and provide a more accurate prediction, we develop an R package, named rSeqTU. rSeqTU uses a random forest algorithm to select essential features describing TUs and then uses support vector machine (SVM) to build TU prediction models. rSeqTU (available at https://s18692001.github.io/rSeqTU/) has six computational functionalities including read quality control, read mapping, training set generation, random-forest-based feature selection, TU prediction, and TU visualization.

scholarly journals Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach

Life ◽  
2021 ◽  
Vol 11 (8) ◽  
pp. 866
Author(s):  
Sony Hartono Wijaya ◽  
Farit Mochamad Afendi ◽  
Irmanida Batubara ◽  
Ming Huang ◽  
Naoaki Ono ◽  
...  
Keyword(s):  
Machine Learning ◽  
Amino Acid ◽  
Random Forest ◽  
Prediction Models ◽  
Amino Acid Sequences ◽  
Support Vector ◽  
Supporting Evidence ◽  
Molecular Fingerprints ◽  
Target Proteins ◽  
Drug Candidates

Background: We performed in silico prediction of the interactions between compounds of Jamu herbs and human proteins by utilizing data-intensive science and machine learning methods. Verifying the proteins that are targeted by compounds of natural herbs will be helpful to select natural herb-based drug candidates. Methods: Initially, data related to compounds, target proteins, and interactions between them were collected from open access databases. Compounds are represented by molecular fingerprints, whereas amino acid sequences are represented by numerical protein descriptors. Then, prediction models that predict the interactions between compounds and target proteins were constructed using support vector machine and random forest. Results: A random forest model constructed based on MACCS fingerprint and amino acid composition obtained the highest accuracy. We used the best model to predict target proteins for 94 important Jamu compounds and assessed the results by supporting evidence from published literature and other sources. There are 27 compounds that can be validated by professional doctors, and those compounds belong to seven efficacy groups. Conclusion: By comparing the efficacy of predicted compounds and the relations of the targeted proteins with diseases, we found that some compounds might be considered as drug candidates.

scholarly journals Evaluating the Performance of Machine Learning Approaches to Predict the Microbial Quality of Surface Waters and to Optimize the Sampling Effort

Water ◽  
2021 ◽  
Vol 13 (18) ◽  
pp. 2457
Author(s):  
Manel Naloufi ◽  
Françoise S. Lucas ◽  
Sami Souihi ◽  
Pierre Servais ◽  
Aurélie Janne ◽  
...  
Keyword(s):  
Machine Learning ◽  
Escherichia Coli ◽  
Random Forest ◽  
Microbiological Quality ◽  
Support Vector ◽  
Sampling Effort ◽  
Temperature Conductivity ◽  
Adaptive Boosting ◽  
Paris Area

Exposure to contaminated water during aquatic recreational activities can lead to gastrointestinal diseases. In order to decrease the exposure risk, the fecal indicator bacteria Escherichia coli is routinely monitored, which is time-consuming, labor-intensive, and costly. To assist the stakeholders in the daily management of bathing sites, models have been developed to predict the microbiological quality. However, model performances are highly dependent on the quality of the input data which are usually scarce. In our study, we proposed a conceptual framework for optimizing the selection of the most adapted model, and to enrich the training dataset. This frameword was successfully applied to the prediction of Escherichia coli concentrations in the Marne River (Paris Area, France). We compared the performance of six machine learning (ML)-based models: K-nearest neighbors, Decision Tree, Support Vector Machines, Bagging, Random Forest, and Adaptive boosting. Based on several statistical metrics, the Random Forest model presented the best accuracy compared to the other models. However, 53.2 ± 3.5% of the predicted E. coli densities were inaccurately estimated according to the mean absolute percentage error (MAPE). Four parameters (temperature, conductivity, 24 h cumulative rainfall of the previous day the sampling, and the river flow) were identified as key variables to be monitored for optimization of the ML model. The set of values to be optimized will feed an alert system for monitoring the microbiological quality of the water through combined strategy of in situ manual sampling and the deployment of a network of sensors. Based on these results, we propose a guideline for ML model selection and sampling optimization.

scholarly journals Comparison of the Validity and Generalizability of Machine Learning Algorithms for the Prediction of Energy Expenditure: Validation Study

10.2196/23938 ◽  
2021 ◽  
Vol 9 (8) ◽  
pp. e23938
Author(s):  
Ruairi O'Driscoll ◽  
Jake Turicchi ◽  
Mark Hopkins ◽  
Cristiana Duarte ◽  
Graham W Horgan ◽  
...  
Keyword(s):  
Physical Activity ◽  
Machine Learning ◽  
Neural Networks ◽  
Random Forest ◽  
Energy Expenditure ◽  
Superior Performance ◽  
Gradient Boosting ◽  
Support Vector ◽  
Data Sets ◽  
Out Of Sample

Background Accurate solutions for the estimation of physical activity and energy expenditure at scale are needed for a range of medical and health research fields. Machine learning techniques show promise in research-grade accelerometers, and some evidence indicates that these techniques can be applied to more scalable commercial devices. Objective This study aims to test the validity and out-of-sample generalizability of algorithms for the prediction of energy expenditure in several wearables (ie, Fitbit Charge 2, ActiGraph GT3-x, SenseWear Armband Mini, and Polar H7) using two laboratory data sets comprising different activities. Methods Two laboratory studies (study 1: n=59, age 44.4 years, weight 75.7 kg; study 2: n=30, age=31.9 years, weight=70.6 kg), in which adult participants performed a sequential lab-based activity protocol consisting of resting, household, ambulatory, and nonambulatory tasks, were combined in this study. In both studies, accelerometer and physiological data were collected from the wearables alongside energy expenditure using indirect calorimetry. Three regression algorithms were used to predict metabolic equivalents (METs; ie, random forest, gradient boosting, and neural networks), and five classification algorithms (ie, k-nearest neighbor, support vector machine, random forest, gradient boosting, and neural networks) were used for physical activity intensity classification as sedentary, light, or moderate to vigorous. Algorithms were evaluated using leave-one-subject-out cross-validations and out-of-sample validations. Results The root mean square error (RMSE) was lowest for gradient boosting applied to SenseWear and Polar H7 data (0.91 METs), and in the classification task, gradient boost applied to SenseWear and Polar H7 was the most accurate (85.5%). Fitbit models achieved an RMSE of 1.36 METs and 78.2% accuracy for classification. Errors tended to increase in out-of-sample validations with the SenseWear neural network achieving RMSE values of 1.22 METs in the regression tasks and the SenseWear gradient boost and random forest achieving an accuracy of 80% in classification tasks. Conclusions Algorithms trained on combined data sets demonstrated high predictive accuracy, with a tendency for superior performance of random forests and gradient boosting for most but not all wearable devices. Predictions were poorer in the between-study validations, which creates uncertainty regarding the generalizability of the tested algorithms.

scholarly journals Prediction of Type 2 Diabetes Based on Machine Learning Algorithm

2021 ◽  
Vol 18 (6) ◽  
pp. 3317
Author(s):  
Henock M. Deberneh ◽  
Intaek Kim
Keyword(s):  
Machine Learning ◽  
Type 2 Diabetes ◽  
Prediction Model ◽  
Prediction Models ◽  
Machine Learning Algorithms ◽  
Superior Performance ◽  
Recursive Feature Elimination ◽  
Medical Institute ◽  
Support Vector

Prediction of type 2 diabetes (T2D) occurrence allows a person at risk to take actions that can prevent onset or delay the progression of the disease. In this study, we developed a machine learning (ML) model to predict T2D occurrence in the following year (Y + 1) using variables in the current year (Y). The dataset for this study was collected at a private medical institute as electronic health records from 2013 to 2018. To construct the prediction model, key features were first selected using ANOVA tests, chi-squared tests, and recursive feature elimination methods. The resultant features were fasting plasma glucose (FPG), HbA1c, triglycerides, BMI, gamma-GTP, age, uric acid, sex, smoking, drinking, physical activity, and family history. We then employed logistic regression, random forest, support vector machine, XGBoost, and ensemble machine learning algorithms based on these variables to predict the outcome as normal (non-diabetic), prediabetes, or diabetes. Based on the experimental results, the performance of the prediction model proved to be reasonably good at forecasting the occurrence of T2D in the Korean population. The model can provide clinicians and patients with valuable predictive information on the likelihood of developing T2D. The cross-validation (CV) results showed that the ensemble models had a superior performance to that of the single models. The CV performance of the prediction models was improved by incorporating more medical history from the dataset.

Machine learning for air quality prediction using meteorological and traffic related features

2020 ◽  
Vol 12 (5) ◽  
pp. 379-391
Author(s):  
Ihsane Gryech ◽  
Mounir Ghogho ◽  
Hajar Elhammouti ◽  
Nada Sbihi ◽  
Abdellatif Kobbane
Keyword(s):  
Machine Learning ◽  
Air Quality ◽  
Linear Models ◽  
Prediction Models ◽  
Road Traffic ◽  
Support Vector ◽  
Air Quality Prediction ◽  
Monitoring Process ◽  
Non Linear ◽  
The Impact

The presence of pollutants in the air has a direct impact on our health and causes detrimental changes to our environment. Air quality monitoring is therefore of paramount importance. The high cost of the acquisition and maintenance of accurate air quality stations implies that only a small number of these stations can be deployed in a country. To improve the spatial resolution of the air monitoring process, an interesting idea is to develop data-driven models to predict air quality based on readily available data. In this paper, we investigate the correlations between air pollutants concentrations and meteorological and road traffic data. Using machine learning, regression models are developed to predict pollutants concentration. Both linear and non-linear models are investigated in this paper. It is shown that non-linear models, namely Random Forest (RF) and Support Vector Regression (SVR), better describe the impact of traffic flows and meteorology on the concentrations of pollutants in the atmosphere. It is also shown that more accurate prediction models can be obtained when including some pollutants’ concentration as predictors. This may be used to infer the concentrations of some pollutants using those of other pollutants, thereby reducing the number of air pollution sensors.

scholarly journals A Combination of Feature Selection and Random Forest Techniques to Solve a Problem Related to Blast-Induced Ground Vibration

2020 ◽  
Vol 10 (3) ◽  
pp. 869 ◽  
Author(s):  
Hong Zhang ◽  
Jian Zhou ◽  
Danial Jahed Armaghani ◽  
M. M. Tahir ◽  
Binh Thai Pham ◽  
...  
Keyword(s):  
Machine Learning ◽  
Feature Selection ◽  
Random Forest ◽  
Regression Models ◽  
Process Analysis ◽  
Ground Vibration ◽  
Predictive Performance ◽  
Support Vector ◽  
Interaction Detection ◽  
Artificial Neural Network Ann

In mining and civil engineering applications, a reliable and proper analysis of ground vibration due to quarry blasting is an extremely important task. While advances in machine learning led to numerous powerful regression models, the usefulness of these models for modeling the peak particle velocity (PPV) remains largely unexplored. Using an extensive database comprising quarry site datasets enriched with vibration variables, this article compares the predictive performance of five selected machine learning classifiers, including classification and regression trees (CART), chi-squared automatic interaction detection (CHAID), random forest (RF), artificial neural network (ANN), and support vector machine (SVM) for PPV analysis. Before conducting these model developments, feature selection was applied in order to select the most important input parameters for PPV. The results of this study show that RF performed substantially better than any of the other investigated regression models, including the frequently used SVM and ANN models. The results and process analysis of this study can be utilized by other researchers/designers in similar fields.

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