scholarly journals Influential Insider: Wolbachia, an Intracellular Symbiont, Manipulates Bacterial Diversity in Its Insect Host

2021 ◽  
Vol 9 (6) ◽  
pp. 1313
Author(s):  
Morgane Ourry ◽  
Agathe Crosland ◽  
Valérie Lopez ◽  
Stéphane A. P. Derocles ◽  
Christophe Mougel ◽  
...  

Facultative intracellular symbionts like the α-proteobacteria Wolbachia influence their insect host phenotype but little is known about how much they affect their host microbiota. Here, we quantified the impact of Wolbachia infection on the bacterial community of the cabbage root fly Delia radicum by comparing the microbiota of Wolbachia-free and infected adult flies of both sexes. We used high-throughput DNA sequencing (Illumina MiSeq, 16S rRNA, V5-V7 region) and performed a community and a network analysis. In both sexes, Wolbachia infection significantly decreased the diversity of D. radicum bacterial communities and modified their structure and composition by reducing abundance in some taxa but increasing it in others. Infection by Wolbachia was negatively correlated to 8 bacteria genera (Erwinia was the most impacted), and positively correlated to Providencia and Serratia. We suggest that Wolbachia might antagonize Erwinia for being entomopathogenic (and potentially intracellular), but would favor Providencia and Serratia because they might protect the host against chemical plant defenses. Although they might seem prisoners in a cell, endocellular symbionts can impact the whole microbiota of their host, hence its extended phenotype, which provides them with a way to interact with the outside world.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kerrie Ní Dhufaigh ◽  
Eugene Dillon ◽  
Natasha Botwright ◽  
Anita Talbot ◽  
Ian O’Connor ◽  
...  

AbstractThe causative agent of amoebic gill disease, Neoparamoeba perurans is reported to lose virulence during prolonged in vitro maintenance. In this study, the impact of prolonged culture on N. perurans virulence and its proteome was investigated. Two isolates, attenuated and virulent, had their virulence assessed in an experimental trial using Atlantic salmon smolts and their bacterial community composition was evaluated by 16S rRNA Illumina MiSeq sequencing. Soluble proteins were isolated from three isolates: a newly acquired, virulent and attenuated N. perurans culture. Proteins were analysed using two-dimensional electrophoresis coupled with liquid chromatography tandem mass spectrometry (LC–MS/MS). The challenge trial using naïve smolts confirmed a loss in virulence in the attenuated N. perurans culture. A greater diversity of bacterial communities was found in the microbiome of the virulent isolate in contrast to a reduction in microbial community richness in the attenuated microbiome. A collated proteome database of N. perurans, Amoebozoa and four bacterial genera resulted in 24 proteins differentially expressed between the three cultures. The present LC–MS/MS results indicate protein synthesis, oxidative stress and immunomodulation are upregulated in a newly acquired N. perurans culture and future studies may exploit these protein identifications for therapeutic purposes in infected farmed fish.


Author(s):  
Eelco Gehring ◽  
Mario F. Trujillo

A primary mechanism of heat transfer in spray cooling is the impingement of numerous droplets onto a heated surface. This mechanism is isolated in the present and ongoing work by numerically simulating the impact of a single train of FC-72 droplets employing an implicit free surface capturing methodology. The droplet frequency and velocity ranges from 2000–4000 Hz, and 0.5–2 m/s, respectively, with a fixed drop size of 239 μm. This gives a corresponding Weber and Reynolds range of 10–170 and 330–1300, respectively. Results show that the impingement zone is largely free of phase change effects due to the efficient suppression of the local temperature field well below the saturated value. Due in part to the relatively high value of the Prandtl number and the compression of the boundary layer from the impingement flow, a cell size on the order of 1 μm is necessary to adequately capture the heat transfer dynamics. It is shown that the cooling behavior increases in relation to increasing frequency and impact velocity, but is most sensitive to velocity. In fact, for sufficiently low velocities the calculations show that the momentum imparted on the film is insufficient to maintain a near stationary liquid crown. The consequence is a noticeable penalty on the cooling behavior.


2018 ◽  
Vol 2018 ◽  
pp. 1-7
Author(s):  
A. B. Vallejo-Mora ◽  
M. Toril ◽  
S. Luna-Ramírez ◽  
M. Regueira ◽  
S. Pedraza

UpLink Power Control (ULPC) is a key radio resource management procedure in mobile networks. In this paper, an analytical model for estimating the impact of increasing the nominal power parameter in the ULPC algorithm for the Physical Uplink Shared CHannel (PUSCH) in Long Term Evolution (LTE) is presented. The aim of the model is to predict the effect of changing the nominal power parameter in a cell on the interference and Signal-to-Interference-plus-Noise Ratio (SINR) of that cell and its neighbors from network statistics. Model assessment is carried out by means of a field trial where the nominal power parameter is increased in some cells of a live LTE network. Results show that the proposed model achieves reasonable estimation accuracy, provided uplink traffic does not change significantly.


Biology ◽  
2021 ◽  
Vol 10 (3) ◽  
pp. 180
Author(s):  
Negash Kabtimer Bereded ◽  
Getachew Beneberu Abebe ◽  
Solomon Workneh Fanta ◽  
Manuel Curto ◽  
Herwig Waidbacher ◽  
...  

The gut microbiota of fishes is known to play an essential role in diverse aspects of host biology. The gut microbiota of fish is affected by various environmental parameters, including temperature changes, salinity and diet. Studies of effect of environment on gut microbiota enables to have a further understanding of what comprises a healthy microbiota under different environmental conditions. However, there is insufficient understanding regarding the effects of sampling season and catching site (wild and aquaculture) on the gut microbiota of Nile tilapia. This study characterised gut microbial composition and diversity from samples collected from Lake Tana and the Bahir Dar aquaculture facility centre using 16S rDNA Illumina MiSeq platform sequencing. Firmicutes and Fusobacteria were the most dominant phyla in the Lake Tana samples, while Proteobacteria was the most dominant in the aquaculture samples. The results of differential abundance testing clearly indicated significant differences for Firmicutes, Fusobacteria, Bacteroidetes and Cyanobacteria across sampling months. However, Proteobacteria, Chloroflexi, Fusobacteria and Cyanobacteria were significantly enriched in the comparison of samples from the Lake Tana and aquaculture centre. Significant differences were observed in microbial diversity across sampling months and between wild and captive Nile tilapia. The alpha diversity clearly showed that samples from the aquaculture centre (captive) had a higher diversity than the wild Nile tilapia samples from Lake Tana. The core gut microbiota of all samples of Nile tilapia used in our study comprised Firmicutes, Proteobacteria and Fusobacteria. This study clearly showed the impact of sampling season and catching site (wild and aquaculture) on the diversity and composition of bacterial communities associated with the gut of Nile tilapia. Overall, this is the first study on the effects of sampling season and catching site on the gut microbiota of Nile tilapia in Ethiopia. Future work is recommended to precisely explain the causes of these changes using large representative samples of Nile tilapia from different lakes and aquaculture farms.


2001 ◽  
Author(s):  
Randall S. Gemmen

Abstract The effect of inverter ripple current on fuel cell stack performance and stack lifetime remains uncertain. This paper provides a first attempt to examine the impact of inverter load dynamics on the fuel cell. Since reactant utilization is known to impact the mechanical state of a fuel cell, it is suggested that the varying reactant conditions surrounding the cell govern, at least in part, the lifetime of the cells. This paper investigates these conditions through the use of a dynamic model for the bulk conditions within the stack, as well as a one-dimensional model for the detailed mass transport occurring within the electrode of a cell. These two independent modeling approaches help to verify their respective numerical procedures. In this work, the inverter load is imposed as a boundary condition to the models. Results show the transient behavior of the reactant concentrations within the stack, and of the mass diffusion within the electrode under inverter loads with frequencies between 30 Hz and 1250 Hz.


2021 ◽  
Author(s):  
Maria Luisa Tello ◽  
Rebeca Lavega ◽  
Margarita Pérez ◽  
Antonio J. Pérez ◽  
Michael Thon ◽  
...  

Abstract The cultivation of edible mushroom is an emerging sector with a potential yet to be discovered. Unlike plants, it is a less developed agriculture where many studies are lacking to optimize the cultivation. Mushrooms are a source of resources still to be revealed, which have applications not only in food, but in many other sectors such as health, industry and biotechnology. Mushroom cultivation consists of the development of selective substrates through composting where the mushroom grows via solid fermentation process. In case of Agaricus bisporus, the compost fully colonized by mycelium hardly produces mushrooms and it is necessary to apply a casing layer with certain physical, chemical and biological characteristics to shift from the vegetative mycelium to the reproductive one, where the native microbiota plays crucial roles. Currently, the industry faces a challenge to substitute the actual peat based casing materials due to the limited natural resources and the impact on the peatlands where peat is extracted.In this work we have employed high-throughput techniques by next generation sequencing to screen the microbial structure of casing soil employed in mushroom cultivation while sequencing V3-V4 of the 16S rRNA gene for bacteria and the ITS2 region of rRNA for fungi in an Illumina MiSeq. In addition, the microbiome dynamics and evolution (bacterial and fungal communities) in peat based casing along the process of incubation of Agaricus bisporus have been studied, while comparing the effect of fungicidal treatment (Chlorothalonil and Metrafenone). Statistically significant changes in populations of bacteria and fungi were observed. Microbial composition differed significantly based on incubation day, changing radically from the original communities to a specific microbial composition adapted to enhance the A. bisporus mycelium growth. Chlorothalonil treatment seems to delay casing colonization by A. bisporus. Proteobacteria and Bacteroidota appeared as the most dominant bacterial phyla. We observed a great change in the structure of the bacteria populations between day 0 and the following days. Fungi populations changed more gradually, A. bisporus displacing the rest of the species as the cultivation cycle progresses. A better understanding of the microbial communities in the casing will hopefully allow us to increase the biological efficiency during production as well as possibly help us to have a clearer view of the microbial community-pathogen relationships as they are directly related to disease development.


2019 ◽  
Vol 11 ◽  
pp. 175682931984612 ◽  
Author(s):  
Tao Yang ◽  
Mingjun Wei ◽  
Kun Jia ◽  
James Chen

It has been a challenge to simulate flexible flapping wings or other three-dimensional problems involving strong fluid–structure interactions. Solving a unified fluid–solid system in a monolithic manner improves both numerical stability and efficiency. The current algorithm considered a three-dimensional extension of an earlier work which formulated two-dimensional fluid–structure interaction monolithically under a unified framework for both fluids and solids. As the approach is extended from a two-dimensional to a three-dimensional configuration, a cell division technique and the associated projection process become necessary and are illustrated here. Two benchmark cases, a floppy viscoelastic particle in shear flow and a flow passing a rigid sphere, are simulated for validation. Finally, the three-dimensional monolithic algorithm is applied to study a micro-air vehicle with flexible flapping wings in a forward flight at different angles of attack. The simulation shows the impact from the angle of attack on wing deformation, wake vortex structures, and the overall aerodynamic performance.


Nutrients ◽  
2020 ◽  
Vol 12 (9) ◽  
pp. 2707 ◽  
Author(s):  
Silvia Pisanu ◽  
Vanessa Palmas ◽  
Veronica Madau ◽  
Emanuela Casula ◽  
Andrea Deledda ◽  
...  

Although it is known that the gut microbiota (GM) can be modulated by diet, the efficacy of specific dietary interventions in determining its composition and diversity in obese patients remains to be ascertained. The present work aims to evaluate the impact of a moderately hypocaloric Mediterranean diet on the GM of obese and overweight patients (OB). The GM of 23 OB patients (F/M = 20/3) was compared before (T0) and after 3 months (T3) of nutritional intervention (NI). Fecal samples were analyzed by Illumina MiSeq sequencing of the 16S rRNA gene. At baseline, GM characterization confirmed typical obesity-associated dysbiosis. After 3 months of NI, patients presented a statistically significant reduction in body weight and fat mass, along with changes in the relative abundance of many microbial patterns. In fact, an increase in the abundance of several Bacteroidetes taxa (i.e., Sphingobacteriaceae, Sphingobacterium, Bacteroides spp., Prevotella stercorea) and a depletion of many Firmicutes taxa (i.e., Lachnospiraceae members, Ruminococcaceae and Ruminococcus, Veillonellaceae, Catenibacterium, Megamonas) were observed. In addition, the phylum Proteobacteria showed an increased abundance, while the genus Sutterella, within the same phylum, decreased after the intervention. Metabolic pathways, predicted by bioinformatic analyses, showed a decrease in membrane transport and cell motility after NI. The present study extends our knowledge of the GM profiles in OB, highlighting the potential benefit of moderate caloric restriction in counteracting the gut dysbiosis.


Toxins ◽  
2019 ◽  
Vol 11 (1) ◽  
pp. 25 ◽  
Author(s):  
Iulian A. Grosu ◽  
Gina C. Pistol ◽  
Ionelia Taranu ◽  
Daniela E. Marin

The study investigated the effect of grape seed (GS) meal, aflatoxin (AFB1), or their combination on the large intestine microbiota of weanling piglets. Twenty-four piglets were allocated into four groups based on diet composition: (1) Control group; (2) AFB1 (320 g/kg feed) group; (3) GS group (8% inclusion in the diet); (4) AFB1 + GS group. After 30 days of experiment, the colon content was used for microbiota analyses; after isolation of total bacterial genomic DNA, V3/V4 regions of the 16S rRNA amplicons were sequenced using the Illumina MiSeq platform. The raw sequences were analyzed using the v.1.9.1 QIIME pipeline software. 157 numbers of OTUs were identified among all four dietary groups with 26 of them being prevalent above 0.05% in the total relative abundance. GS and AFB1 increase the relative abundance of phylum Bacteroidetes and Proteobacteria, while decreasing the Firmicutes abundance in a synergic manner as compared with the individual treatments. An additive or synergistic action of the two treatments was identified for Lactobacillus, Prevotella and Campylobacter, while rather an antagonistic effect was observed on Lachnospira. The action mechanisms of aflatoxin B1 and grape seed meal that drive the large intestine microbiota to these changes are not known and need further investigations.


2020 ◽  
Vol 36 (4) ◽  
pp. 1067-1074
Author(s):  
James Bailie

Differential privacy (DP) has emerged in the computer science literature as a measure of the impact on an individual’s privacy resulting from the publication of a statistical output such as a frequency table. This paper provides an introduction to DP for official statisticians and discuss its relevance, benefits and challenges from a National Statistical Organisation (NSO) perspective. We motivate our study by examining how privacy is evolving in the era of big data and how this might prompt a shift from traditional statistical disclosure techniques used in official statistics – which are generally applied on a cell-by-cell or table-by-table basis – to formal privacy methods, like DP, which are applied from a perspective encompassing the totality of the outputs generated from a given dataset. We identify an important interplay between DP’s holistic privacy risk measure and the difficulty for NSOs in implementing DP, showing that DP’s major advantage is also DP’s major challenge. This paper provides new work addressing two key DP research areas for NSOs: DP’s application to survey data and its incorporation within the Five Safes framework.


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