scholarly journals Microbial Communities Present in Hydrothermal Sediments from Deception Island, Antarctica

2021 ◽  
Vol 9 (8) ◽  
pp. 1631
Author(s):  
Javier Vicente ◽  
Miguel de Celis ◽  
Alejandro Alonso ◽  
Domingo Marquina ◽  
Antonio Santos

Deception Island is a geothermal location in Antarctica that presents active fumaroles, which confers unique characteristics to this habitat. Several studies about microbial communities in Antarctica have been carried out, nevertheless, Antarctic microbiota is still partially unknown. Here we present a multidisciplinary study about sediments obtained by deposition during 4 years in which several approaches have been considered for their characterization. First, a physicochemical characterization, using ionic chromatography and mass spectrometry for the determination of most abundant ions (chloride and sulphate) and elements (mainly silicon), was conducted. In addition, the total microbial community was studied using a metataxonomical approach, revealing a bacterial community dominated by Proteobacteria and Thaumarchaeota as the main archaeal genera and a fungal community mainly composed by Aspergillaceae. Culture-dependent studies showed low microbial diversity, only achieving the isolation of Bacillus-related species, some of them thermophilic, and the isolation of common fungi of Aspergillus or Penicillium spp. Furthermore, diatoms were detected in the sediment and characterized attending to their morphological characteristics using scanning electron microscopy. The study reveals a high influence of the physicochemical conditions in the microbial populations and their distribution, offering valuable data on the interaction between the island and water microbiota.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Taslima Ahmed Tamanna ◽  
Shah Alimuzzaman Belal ◽  
Mohammad Abul Hasan Shibly ◽  
Ayub Nabi Khan

AbstractThis study deals with the determination of new natural fibers extracted from the Corypha taliera fruit (CTF) and its characteristics were reported for the potential alternative of harmful synthetic fiber. The physical, chemical, mechanical, thermal, and morphological characteristics were investigated for CTF fibers. X-ray diffraction and chemical composition characterization ensured a higher amount of cellulose (55.1 wt%) content and crystallinity (62.5%) in the CTF fiber. The FTIR analysis ensured the different functional groups of cellulose, hemicellulose, and lignin present in the fiber. The Scherrer’s equation was used to determine crystallite size 1.45 nm. The mean diameter, specific density, and linear density of the CTF fiber were found (average) 131 μm, 0.86 g/cc, and 43 Tex, respectively. The maximum tensile strength was obtained 53.55 MPa for GL 20 mm and Young’s modulus 572.21 MPa for GL 30 mm. The required energy at break was recorded during the tensile strength experiment from the tensile strength tester and the average values for GL 20 mm and GL 30 mm are 0.05381 J and 0.08968 J, respectively. The thermal analysis ensured the thermal sustainability of CTF fiber up to 230 °C. Entirely the aforementioned outcomes ensured that the new CTF fiber is the expected reinforcement to the fiber-reinforced composite materials.


Microbiome ◽  
2021 ◽  
Vol 9 (1) ◽  
Author(s):  
Alberto Pascual-García

AbstractIn this comment, we analyse the conceptual framework proposed by Aguirre de Cárcer (Microbiome 7:142, 2019), introducing the novel concept of Phylogenetic Core Groups (PCGs). This notion aims to complement the traditional classification in operational taxonomic units (OTUs), widely used in microbial ecology, to provide a more intrinsic taxonomical classification which avoids the use of pre-determined thresholds. However, to introduce this concept, the author frames his proposal in a wider theoretical framework based on a conceptualization of selection that we argue is a tautology. This blurs the subsequent formulation of an assembly principle for microbial communities, favouring that some contradictory examples introduced to support the framework appear aligned in their conclusions. And more importantly, under this framework and its derived methodology, it is not possible to infer PCGs from data in a consistent way. We reanalyse the proposal to identify its logical and methodological flaws and, through the analysis of synthetic scenarios, we propose a number of methodological refinements to contribute towards the determination of PCGs in a consistent way. We hope our analysis will promote the exploration of PCGs as a potentially valuable tool, helping to bridge the gap between environmental conditions and community composition in microbial ecology.


2003 ◽  
Vol 69 (4) ◽  
pp. 2377-2382 ◽  
Author(s):  
Said El Fantroussi ◽  
Hidetoshi Urakawa ◽  
Anne E. Bernhard ◽  
John J. Kelly ◽  
Peter A. Noble ◽  
...  

ABSTRACT Oligonucleotide microarrays were used to profile directly extracted rRNA from environmental microbial populations without PCR amplification. In our initial inspection of two distinct estuarine study sites, the hybridization patterns were reproducible and varied between estuarine sediments of differing salinities. The determination of a thermal dissociation curve (i.e., melting profile) for each probe-target duplex provided information on hybridization specificity, which is essential for confirming adequate discrimination between target and nontarget sequences.


2021 ◽  
Vol 36 (Supplement_1) ◽  
Author(s):  
D Parvanov ◽  
R Ganeva ◽  
M Handzhiyska ◽  
N Vidolova ◽  
G Stamenov

Abstract Study question Is there a relationship between the serum progesterone and estradiol levels and certain morphological characteristics of human endometrium during the mid-luteal phase? Summary answer Serum progesterone is associated with the stromal edema and the abundance and size of basal vacuoles in the endometrium of women during the mid-luteal phase. What is known already Progesterone and estrogen are essential hormones that are necessary to prepare the endometrium for pregnancy. Their serum concentrations during the mid-luteal phase are important criteria for prediction of successful embryo implantation. In addition, a variety of endometrial morphological markers, such as the presence of pinopodes, subnuclear and supranuclear vacuoles, glandular secretion, and stromal edema have been applied for determination of the window of implantation and endometrial receptivity. However, the relationship between these endometrial morphological characteristics and serum levels of progesterone and estradiol is still scarcely studied. Study design, size, duration This is an observational study of 98 women, 25 to 46 years of age (mean 37 years), who had a blood sample and an endometrial biopsy during the mid-lutheal phase (LH + 7) in a natural cycle. The study was conducted between August 2020 and November 2020. Participants/materials, setting, methods Serum progesterone and estradiol were measured by electrochemiluminescence immunoassay (ECLIA) on the Cobas e411 analyser (Roche Diagnostics, Germany). The following endometrial morphological characteristics were assessed using light microscopy: (1) basal vacuoles (mean size and percentage of vacuolated glandular cells) (2) apical vacuoles (mean size and percentage of vacuolated glandular cells), (3) pinopodes (percentage of luminal epithelium covered in pinopodes), (4) glandular intraluminal secretion (6-level scoring system), (5) stromal edema (6-level scoring system). Main results and the role of chance The serum progesterone levels ranged between 0.39 and 145.3 ng/ml, with a median of 24.36 ng/ml. The serum estradiol levels varied between 26.91 and 842.89 pg/ml with a median of 124.75 pg/ml. The percentage of cells with basal vaculoles ranged from 0 to 90%, with a median of 38.57%, apical vacuoles (0–50%, 16.83%), pinopodes (0–80%, 23.87%), glandular intraluminal secretion (0–80%, 28.57%), and stromal edema (1–6, 1.42). To examine the association between the serum progesterone and estradiol and the studied endometrial morphological characteristics, the Spearman’s Rho Correlation coefficient for non-paramentric data was used. No correlation was found between serum estradiol levels and the studied morphological variables (p > 0.05). In contrast, the serum progesterone concentration showed a significant negative correlation with the percentage of glandular epithelial cells with basal vacuoles (R= - 0.28; p = 0.03), the mean size of the basal vacuoles (R= - 0.24; p = 0.5) and a significant positive correlation with the stromal edema (R = 0.34; p < 0.01). Limitations, reasons for caution The study was limited in sample size. Wider implications of the findings: The results of this study revealed that serum progesterone is more strongly associated with the occurrence of certain endometrial morphological characteristics during the mid-luteal phase than serum estradiol. These findings are valuable for development of new methods for accurate determination of the window of implantation. Trial registration number Not applicable


2018 ◽  
Vol 95 (1) ◽  
Author(s):  
Michael McTee ◽  
Lorinda Bullington ◽  
Matthias C Rillig ◽  
Philip W Ramsey

ABSTRACTMany experiments that measure the response of microbial communities to heavy metals increase metal concentrations abruptly in the soil. However, it is unclear whether abrupt additions mimic the gradual and often long-term accumulation of these metals in the environment where microbial populations may adapt. In a greenhouse experiment that lasted 26 months, we tested whether bacterial communities and soil respiration differed between soils that received an abrupt or a gradual addition of copper or no copper at all. Bacterial richness and other diversity indices were consistently lower in the abrupt treatment compared to the ambient treatment that received no copper. The abrupt addition of copper yielded different initial bacterial communities than the gradual addition; however, these communities appeared to converge once copper concentrations were approximately equal. Soil respiration in the abrupt treatment was initially suppressed but recovered after four months. Afterwards, respiration in both the gradual and abrupt treatments wavered between being below or equal to the ambient treatment. Overall, our study indicates that gradual and abrupt additions of copper can yield similar bacterial communities and respiration, but these responses may drastically vary until copper concentrations are equal.


2018 ◽  
Vol 28 (55) ◽  
pp. 845-862
Author(s):  
Fabiana Barros Medeiros ◽  
Francieli Sant'ana Marcatto ◽  
Hélio Silveira ◽  
MariaTeresa De Nóbrega

Esta pesquisa tem como objetivo estudar a vulnerabilidade à erosão dos solos da zona de contato do arenito da Formação Caiuá com o basalto da Formação Serra Geral, no município de Araruna, Mesorregião Noroeste Paranaense, dando enfoque ao papel da estabilidade da estrutura atual dos solos, considerando-se as alterações produzidas pelas formas de uso e ocupação da área. A análise realizada também considerou as variações das características morfológicas dos solos em perfil e ao longo da litossequência (sistema pedológico), assim como os seus reflexos na geração de setores mais ou menos suscetíveis à erosão na vertente. Para o levantamento dos solos ao longo da vertente foram utilizados os procediments propostos pela Análise Estrutural da Cobertura Pedológica e a coleta de amostras para a determinação da granulometria e estabilidade de agregados. Os resultados indicaram a ação dos fluxos de água laterais e verticais, atuando na transformação dos horizontes dos solos ao longo da vertente e uma variação da estabilidade estrutural associada as características morfológicas dos solos e ao tipo de uso e manejo empregado. Os Argissolos apresentaram agregados pequenos e um gradiente textural entre o horizonte superficial e subsuperficial, lhe conferindo uma forte suscetibilidade a erosão. O Nitossolo não apresentou grande diferenciação no tamanho dos agregados, exceto no horizonte Bw, onde a redução no tamanho dos agregados se associaram a mudança morfológica da estrutura do solo.AbstractThis research aims to study the vulnerability to soil erosion of the contact zone of the sandstone Formation Caiuá with basalt of the Serra Geral Formation, in the municipality of Araruna, Paraná Northwest Region, giving focus to the role of the stability of the current structure of soils, considering the changes produced by the forms of use and occupation of the area. The analysis also considered variations of morphological characteristics of soils in profile and along the lithosactivity (pedological system), as well as your reflexes in the generation of sectors more or less susceptible to erosion in the shed. For the survey of the soils along the strand, the procedures proposed by the Structural Analysis of the Pedological Coverage and the collection of samples for the determination of the granulometry and stability of aggregates were used. The results indicated the action of the lateral and vertical water flows, acting on the transformation of the soil horizons along the slope and a variation of the structural stability associated with the morphological characteristics of the soils and the type of use and management used. The Argisols presented small aggregates and a textural gradient between the surface and subsurface horizon, giving it a strong susceptibility to erosion. The Nitossolo did not show great differentiation in the size of the aggregates, except in the Bw horizon, where the reduction in the size of the aggregates was associated to the morphological change of the soil structure.Keywords: structural analysis of the soil cover, stability of aggregates, susceptibility to erosion, pedological systems.


Author(s):  
Valnyr Vasconcelos Lira ◽  
Francisco Fechine Borges ◽  
Jéssica Cordeiro da Silva Santos ◽  
Antônio Pedro Gomes Tabosa ◽  
Mário Eduardo Rangel Moreira Cavalcanti Mata

<p><span class="fontstyle0">With the evolution of cultivation techniques, the world production of fruits and vegetables has been presenting a continuous growth. Despite the increase in production, a significant portion of the harvested products is mainly lost in the post-harvest due to several factors, such as inapropriate handling, transportation and conservation, lack of selection and classification, poorly sized packaging, among others. In general, the quality of fruits and vegetables is usually evaluated by the following parameters: size, shape, mass, color, firmness, ripeness, absence of bruises and pathologies.The objective of this work was to develop an application in Matlab to detect morphological characteristics (width, length, area, perimeter) of Mangifera indica L., ‘Tommy Atkins’ mangos from images, and using the same images, estimate its weigth. The images of the mangoes were acquired with a digital camera attached to an illuminated box and later processed in an application developed in Matlab. The images showed the morphological characteristics of the samples were obtained and an equation was determined to estimate their mass. The determination of the mass from the images had a 96% correlation with the actual mass measured with a scale and it was possible to obtain a reliable estimate of the masses of the mangoes from their images.</span></p>


2018 ◽  
Vol 25 (33) ◽  
pp. 33322-33333 ◽  
Author(s):  
Yamina Mehdi ◽  
Ashraf Mutlaq ◽  
Qosay Al-Balas ◽  
Elhanafi Azzi ◽  
Lamia Bouadjela ◽  
...  

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