scholarly journals Co-Localization of Crotamine with Internal Membranes and Accentuated Accumulation in Tumor Cells

Molecules ◽  
2018 ◽  
Vol 23 (4) ◽  
pp. 968 ◽  
Author(s):  
Nicole Mambelli-Lisboa ◽  
Juliana Mozer Sciani ◽  
Alvaro Rossan Brandão Prieto da Silva ◽  
Irina Kerkis
Keyword(s):  
Molecular Mass ◽  
Tumor Cells ◽  
Large Scale ◽  
Time Lapse ◽  
Mass Spectrometry Analysis ◽  
Molecular Probe ◽  
Spastic Paralysis ◽  
Spectrometry Analysis ◽  
Hind Limbs ◽  
Wide Range

Crotamine is a highly cationic; cysteine rich, cross-linked, low molecular mass cell penetrating peptide (CPP) from the venom of the South American rattlesnake. Potential application of crotamine in biomedicine may require its large-scale purification. To overcome difficulties related with the purification of natural crotamine (nCrot) we aimed in the present study to synthesize and characterize a crotamine analog (sCrot) as well investigate its CPP activity. Mass spectrometry analysis demonstrates that sCrot and nCrot have equal molecular mass and biological function—the capacity to induce spastic paralysis in the hind limbs in mice. sCrot CPP activity was evaluated in a wide range of tumor and non-tumor cell tests performed at different time points. We demonstrate that sCrot-Cy3 showed distinct co-localization patterns with intracellular membranes inside the tumor and non-tumor cells. Time-lapse microscopy and quantification of sCrot-Cy3 fluorescence signalss in living tumor versus non-tumor cells revealed a significant statistical difference in the fluorescence intensity observed in tumor cells. These data suggest a possible use of sCrot as a molecular probe for tumor cells, as well as, for the selective delivery of anticancer molecules into these tumors.

Purification and Partial Amino Acid Sequence of Pentocin 31-1, an Anti-Listeria Bacteriocin Produced by Lactobacillus pentosus 31-1

2009 ◽  
Vol 72 (12) ◽  
pp. 2524-2529 ◽  
Author(s):  
JINLAN ZHANG ◽  
GUORONG LIU ◽  
NAN SHANG ◽  
WANPENG CHENG ◽  
SHANGWU CHEN ◽  
...  
Keyword(s):  
Molecular Mass ◽  
Specific Activity ◽  
Consensus Sequence ◽  
Polyacrylamide Gel Electrophoresis ◽  
Sodium Dodecyl ◽  
Mass Spectrometry Analysis ◽  
Gel Chromatography ◽  
Original Activity ◽  
Lactobacillus Pentosus ◽  
Spectrometry Analysis

Pentocin 31-1, an anti-Listeria bacteriocin produced by Lactobacillus pentosus 31-1 from the traditional Chinese fermented Xuan-Wei ham, was successfully purified by the pH-mediated cell adsorption-desorption method and then purified by gel chromatography with Sephadex G-10. The purification resulted in a 1,381.9-fold increase in specific activity with a yield of 76.8% of the original activity. Using Tricine–sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE), the molecular mass of the purified peptide was found to be between 3,500 and 6,400 Da, and bacteriocin activity was confirmed by overlayer techniques. When subjected to mass spectrometry analysis, the protein was highly pure and its molecular mass was 5,592.225 Da. The partial N-terminal sequence of pentocin 31-1 was the following: NH2-VIADYGNGVRXATLL. Compared with the sequence of other bacteriocins, pentocin 31-1 has the consensus sequence YGNGV in its N-terminal region, and therefore it belongs to the class IIa of bacteriocins.

scholarly journals Bacteriophage φEf11 ORF28 Endolysin, a Multifunctional Lytic Enzyme with Properties Distinct from All Other IdentifiedEnterococcus faecalisPhage Endolysins

2019 ◽  
Vol 85 (13) ◽  
Author(s):  
Hongming Zhang ◽  
Bettina A. Buttaro ◽  
Derrick E. Fouts ◽  
Salar Sanjari ◽  
Bradley S. Evans ◽  
...  
Keyword(s):  
Cell Wall ◽  
Enterococcus Faecalis ◽  
Amino Acid Identity ◽  
Lytic Infection ◽  
Mass Spectrometry Analysis ◽  
Lytic Enzyme ◽  
Lytic Enzymes ◽  
Content Type ◽  
Spectrometry Analysis ◽  
Wide Range

ABSTRACTϕEf11 is a temperateSiphoviridaebacteriophage that infects strains ofEnterococcus faecalis. The ϕEf11 genome, encompassing 65 open reading frames (ORFs), is contained within 42,822 bp of DNA. Within this genome, a module of six lysis-related genes was identified. Based upon sequence homology, one of these six genes, ORF28, was predicted to code for anN-acetylmuramoyl-l-alanine amidase endolysin of 46.133 kDa, composed of 421 amino acids. The PCR-amplified ORF28 was cloned and expressed, and the resulting gene product was affinity purified to homogeneity. The purified protein was obtained from a fusion protein that exhibited a molecular mass of 72.5 kDa, consistent with a 46.1-kDa protein combined with a fused 26.5-kDa glutathioneS-transferase tag. It produced rapid, profound lysis inE. faecalispopulations and was active against 73 of 103 (71%)E. faecalisstrains tested. In addition, it caused substantial destruction ofE. faecalisbiofilms. The lysin was quite stable, retaining its activity for three years in refrigerated storage, was stable over a wide range of pHs, and was unaffected by the presence of a reducing agent; however, it was inhibited by increasing concentrations of Ca2+. Liquid chromatography-mass spectrometry analysis ofE. faecaliscell wall digestion products produced by the ORF28 endolysin indicated that the lysin acted as anN-acetylmuramidase, an endo-β-N-acetylglucosaminidase, and an endopeptidase, rather than anN-acetylmuramoyl-l-alanine amidase. The ϕEf11 ORF28 lysin shared 10% to 37% amino acid identity with the lytic enzymes of all other characterizedE. faecalisbacteriophages.IMPORTANCEThe emergence of multidrug-resistant pathogenic microorganisms has brought increasing attention to the urgent need for the development of alternative antimicrobial strategies. One such alternative to conventional antibiotics employs lytic enzymes (endolysins) that are produced by bacteriophages in the course of lytic infection. During lytic infection by a bacteriophage, these enzymes hydrolyze the cell wall peptidoglycan, resulting in the lysis of the host cell. However, external endolysin application can result in lysis from without. In this study, we have cloned, expressed, purified, and characterized an endolysin produced by a bacteriophage infecting strains ofEnterococcus faecalis. The lysin is broadly active against most of the testedE. faecalisstrains and exhibits multifunctional enzymatic specificities that differ from all other characterized endolysins produced byE. faecalisbacteriophages.

The Occurrence and Origin of Pentlandite-Chalcopyrite-Pyrrhotite Loop Textures in Magmatic Ni-Cu Sulfide Ores

2020 ◽  
Vol 115 (8) ◽  
pp. 1777-1798 ◽  
Author(s):  
Stephen J. Barnes ◽  
Valentina Taranovic ◽  
Louise E. Schoneveld ◽  
Eduardo T. Mansur ◽  
Margaux Le Vaillant ◽  
...  
Keyword(s):  
Grain Boundary ◽  
Peritectic Reaction ◽  
Inductively Coupled Plasma ◽  
Mass Spectrometry Analysis ◽  
Sulfide Liquid ◽  
Monosulfide Solid Solution ◽  
Spectrometry Analysis ◽  
Inductively Coupled ◽  
Regional Deformation ◽  
Wide Range

Abstract Pentlandite is the dominant Ni-hosting ore mineral in most magmatic sulfide deposits and has conventionally been interpreted as being entirely generated by solid-state exsolution from the high-temperature monosulfide solid solution (MSS) (Fe,Ni)1–xS. This process gives rise to the development of loops of pentlandite surrounding pyrrhotite grains. Recently it has been recognized that not all pentlandite forms by exsolution. Some may form as the result of peritectic reaction between early formed MSS and residual Ni-Cu–rich sulfide liquid during differentiation of the sulfide melt, such that at least some loop textures may be genuinely magmatic in origin. Testing this hypothesis involved microbeam X-ray fluorescence mapping to image pentlandite-pyrrhotite-chalcopyrite intergrowths from a range of different deposits. These deposits exemplify slowly cooled magmatic environments (Nova, Western Australia; Sudbury, Canada), globular ores from shallow-level intrusions (Norilsk, Siberia), extrusive komatiite-hosted ores from low and high metamorphic-grade terranes, and a number of other deposits. Our approach was complemented by laser ablation-inductively coupled plasma-mass spectrometry analysis of palladium in varying textural types of pentlandite within these deposits. Pentlandite forming coarse granular aggregates, together with loop-textured pentlandite where chalcopyrite also forms part of the loop framework, consistently has the highest Pd content compared with pentlandite clearly exsolved as lamellae from MSS or pyrrhotite. This is consistent with much of granular and loop pentlandite being formed by peritectic reaction between Pd-rich residual sulfide liquid and early crystallized MSS, rather than forming entirely by subsolidus grain boundary exsolution from MSS, as has hitherto been assumed. The wide range of Pd contents in pentlandite in individual samples reflects a continuum of processes between peritectic reaction and grain boundary exsolution. Textures in metamorphically recrystallized ores are distinctly different from loop-textured ores, implying that loop textures cannot be regenerated (except in special circumstances) by metamorphic recrystallization of original magmatic-textured ores. The presence of loop textures can therefore be taken as evidence of a lack of penetrative deformation and remobilization at submagmatic temperatures, a conclusion of particular significance to the interpretation of the Nova deposit as having formed synchronously with the peak of regional deformation at temperatures within the sulfide melting range.

Purification and characterization of enterocin MC13 produced by a potential aquaculture probiontEnterococcus faeciumMC13 isolated from the gut ofMugil cephalus

2011 ◽  
Vol 57 (12) ◽  
pp. 993-1001 ◽  
Author(s):  
R. Satish Kumar ◽  
P. Kanmani ◽  
N. Yuvaraj ◽  
K.A. Paari ◽  
V. Pattukumar ◽  
...  
Keyword(s):  
Molecular Mass ◽  
Enterococcus Faecium ◽  
Vibrio Vulnificus ◽  
Proteolytic Enzymes ◽  
Polyacrylamide Gel Electrophoresis ◽  
Sodium Dodecyl ◽  
Probiotic Bacterium ◽  
Mass Spectrometry Analysis ◽  
Native Page ◽  
Spectrometry Analysis

A bacteriocin producer strain MC13 was isolated from the gut of Mugil cephalus (grey mullet) and identified as Enterococcus faecium . The bacteriocin of E. faecium MC13 was purified to homogeneity, as confirmed by Tricine sodium dodecyl sulphate – polyacrylamide gel electrophoresis (SDS–PAGE). Reverse-phase high-performance liquid chromatography (HPLC) analysis showed a single active fraction eluted at 26 min, and matrix-assisted laser desorption ionization time of flight (MALDI-TOF) mass spectrometry analysis showed the molecular mass to be 2.148 kDa. The clear zone in native PAGE corresponding to enterocin MC13 band further substantiated its molecular mass. A dialyzed sample (semicrude preparation) of enterocin MC13 was broad spectrum in its action and inhibited important seafood-borne pathogens: Listeria monocytogenes , Vibrio parahaemolyticus , and Vibrio vulnificus . This antibacterial substance was sensitive to proteolytic enzymes: trypsin, protease, and chymotrypsin but insensitive to catalase and lipase, confirming that inhibition was due to the proteinaceous molecule, i.e., bacteriocin, and not due to hydrogen peroxide. Enterocin MC13 tolerated heat treatment (up to 90 °C for 20 min). Enterococcus faecium MC13 was effective in bile salt tolerance, acid tolerance, and adhesion to the HT-29 cell line. These properties reveal the potential of E. faecium MC13 to be a probiotic bacterium. Enterococcus faecium MC13 could be used as potential fish probiotic against pathogens such as V. parahaemolyticus, Vibrio harveyi , and Aeromonas hydrophila in fisheries. Also, this could be a valuable seafood biopreservative against L. monocytogenes.

scholarly journals Large-scale identification of protein histidine methylation in human cells

2021 ◽  
Vol 3 (2) ◽  
Author(s):  
Sebastian Kapell ◽  
Magnus E Jakobsson
Keyword(s):  
Large Scale ◽  
Human Cells ◽  
System Level ◽  
Mass Spectrometry Analysis ◽  
Regulatory Function ◽  
Lysine Methylation ◽  
Spectrometry Analysis ◽  
Arginine Residues ◽  
Sequence Requirements ◽  
Level Analysis

Abstract Methylation can occur on histidine, lysine and arginine residues in proteins and often serves a regulatory function. Histidine methylation has recently attracted attention through the discovery of the human histidine methyltransferase enzymes SETD3 and METTL9. There are currently no methods to enrich histidine methylated peptides for mass spectrometry analysis and large-scale studies of the modification are hitherto absent. Here, we query ultra-comprehensive human proteome datasets to generate a resource of histidine methylation sites. In HeLa cells alone, we report 299 histidine methylation sites as well as 895 lysine methylation events. We use this resource to explore the frequency, localization, targeted domains, protein types and sequence requirements of histidine methylation and benchmark all analyses to methylation events on lysine and arginine. Our results demonstrate that histidine methylation is widespread in human cells and tissues and that the modification is over-represented in regions of mono-spaced histidine repeats. We also report colocalization of the modification with functionally important phosphorylation sites and disease associated mutations to identify regions of likely regulatory and functional importance. Taken together, we here report a system level analysis of human histidine methylation and our results represent a comprehensive resource enabling targeted studies of individual histidine methylation events.

scholarly journals Novel exosome biomarker candidates for Alzheimer´s disease unraveled through Mass Spectrometry analysis

2021 ◽  
Author(s):  
Tânia Soares Martins ◽  
Rui Marçalo ◽  
Cristóvão B. da Cruz e Silva ◽  
Dário Trindade ◽  
José Catita ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Multivariate Analyses ◽  
Cost Effective ◽  
Accurate Diagnosis ◽  
Functional Enrichment ◽  
Mass Spectrometry Analysis ◽  
Spectrometry Analysis ◽  
Wide Range ◽  
Go Terms ◽  
Peripheral Biomarker

Abstract Exosomes are small extracellular vesicles (EVs) present in human biofluids that can transport specific disease-associated molecules. Consequently blood-derived exosomes have emerged as important peripheral biomarker sources for a wide range of diseases, among them Alzheimer’s disease (AD). Although there is no effective cure for AD, an accurate diagnosis, relying on easily accessible peripheral biofluids, is still necessary to discriminate this disease from other dementias, test potential therapies and even monitor rate of disease progression. The ultimate goal is to produce a cost-effective and widely available alternative, which can also be employed as a first clinical screen. In this study, EVs with exosome-like characteristics were isolated from serum of Controls and AD cases through precipitation- and column-based methods, followed by mass spectrometry analysis. The resulting proteomes were characterized by Gene Ontology (GO) functional enrichment and multivariate analyses. Although GO terms were similar for exosomes proteomes of Controls and ADs, using both methodologies, a clear segregation of disease cases was obtained when using the precipitation-based method. Nine significantly different abundant proteins were identified between Controls and AD cases, representing putative biomarker candidate targets. Among them AACT and C4BPα, two Aβ-binding proteins, whose exosome levels were further validated in individuals from independent cohorts using antibody-based approaches. The findings discussed represent an important contribution to the identification of novel exosomal biomarker candidates useful as potential blood-based tools for AD diagnosis.

scholarly journals Flavin dependency undermines proteome stability, lipid metabolism and cellular proliferation during vitamin B2 deficiency

2020 ◽  
Vol 11 (9) ◽  
Author(s):  
Adrían Martínez-Limón ◽  
Giulia Calloni ◽  
Robert Ernst ◽  
R. Martin Vabulas
Keyword(s):  
Tumor Cells ◽  
Mammalian Cells ◽  
Cellular Proliferation ◽  
Mevalonate Pathway ◽  
Synthetic Lethality ◽  
Metabolic Reprogramming ◽  
Mass Spectrometry Analysis ◽  
Vitamin B2 ◽  
Hsp90 Inhibition ◽  
Spectrometry Analysis

Abstract Tumor cells adapt their metabolism to meet the energetic and anabolic requirements of high proliferation and invasiveness. The metabolic addiction has motivated the development of therapies directed at individual biochemical nodes. However, currently there are few possibilities to target multiple enzymes in tumors simultaneously. Flavin-containing enzymes, ca. 100 proteins in humans, execute key biotransformations in mammalian cells. To expose metabolic addiction, we inactivated a substantial fraction of the flavoproteome in melanoma cells by restricting the supply of the FMN and FAD precursor riboflavin, the vitamin B2. Vitamin B2 deficiency affected stability of many polypeptides and thus resembled the chaperone HSP90 inhibition, the paradigmatic multiple-target approach. In support of this analogy, flavin-depleted proteins increasingly associated with a number of proteostasis network components, as identified by the mass spectrometry analysis of the FAD-free NQO1 aggregates. Proteome-wide analysis of the riboflavin-starved cells revealed a profound inactivation of the mevalonate pathway of cholesterol synthesis, which underlines the manifold cellular vulnerability created by the flavoproteome inactivation. Cell cycle-arrested tumor cells became highly sensitive to alkylating chemotherapy. Our data suggest that the flavoproteome is well suited to design synthetic lethality protocols combining proteostasis manipulation and metabolic reprogramming.

Rutin synthase in fava d’anta: purification and influence of stressors

2009 ◽  
Vol 89 (5) ◽  
pp. 895-902 ◽  
Author(s):  
N Lucci ◽  
P Mazzafera
Keyword(s):  
Mass Spectrometry ◽  
Molecular Mass ◽  
Reaction Temperature ◽  
Enzyme Activities ◽  
Apparent Molecular Mass ◽  
Mass Spectrometry Analysis ◽  
Spectrometry Analysis ◽  
Intermediary Metabolite ◽  
Sds Page ◽  
Optimum Reaction

The flavonoid rutin is synthesized in plants from quercetin, via a process in which isoquercitrin is an intermediary metabolite. In this work, the activities of isoquercitrin synthase and rutin synthase, and the quercetin, isoquercitrin and rutin contents of fava d’anta plants stressed for water (drought and flooding) and salt (NaCl) were studied. In general, stress increased the contents of the three compounds and both enzyme activities. Semi-purified rutin synthase and isoquercitrin synthase showed Km values of 1.816 and 2.10 µM, respectively, with optimum reaction pHs of 5 and 7, respectively, and an optimum reaction temperature of 35°C. Rutin synthase was purified from leaf buds and showed an apparent molecular mass of 39 KDa by SDS-PAGE. Mass spectrometry analysis of the purified protein did not reveal any similarity to the few known sequenced glycosyltransferases.Key words: Dimorphandra mollis, faveiro, flavonoid, isoquercitrin, quercetin.

Application of IOT (Internet of Things) Technology in Chemical Testing with Large-Scale Analysis Instruments

2014 ◽  
Vol 701-702 ◽  
pp. 475-479
Author(s):  
Hong Bo Chen ◽  
Yi Zheng ◽  
Yan Gang Han
Keyword(s):  
Large Scale ◽  
Mass Spectrometry Analysis ◽  
Testing System ◽  
Spectrometry Analysis ◽  
Whole Process ◽  
Large Scale Analysis ◽  
Intelligent Methods ◽  
Internet Of Things Technology ◽  
Chemical Testing ◽  
Standard Development

In the field of chemical testing, it is of great importance to improve the accuracy and efficiency and reduce the risk caused by artificial factor with modern intelligent methods, which are critical to the standard development of testing labs. In this paper, intelligent control during the whole process of chromatography and mass spectrometry analysis with cloud computing technology was realized and discussed in detail. The intelligent testing system could be applied to the chemical analysis labs and spread to other fields.

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