scholarly journals Physiological and Transcriptomic Characterization of Sea-Wheatgrass-Derived Waterlogging Tolerance in Wheat

Plants ◽  
2021 ◽  
Vol 11 (1) ◽  
pp. 108
Author(s):  
Wenqiang Li ◽  
Ghana S. Challa ◽  
Ajay Gupta ◽  
Liping Gu ◽  
Yajun Wu ◽  
...  
Keyword(s):  
Nitric Oxide ◽  
Nitrate Assimilation ◽  
Root Tips ◽  
Waterlogging Tolerance ◽  
Root Porosity ◽  
Oxygen Loss ◽  
Hypoxia Stress ◽  
Underlying Mechanisms ◽  
Wheat Parent

Waterlogging, causing hypoxia stress and nitrogen depletion in the rhizosphere, has been an increasing threat to wheat production. We developed a wheat–sea wheatgrass (SWG) amphiploid showing superior tolerance to waterlogging and low nitrogen. Validated in deoxygenated agar medium for three weeks, hypoxia stress reduced the dry matter of the wheat parent by 40% but had little effect on the growth of the amphiploid. To understand the underlying mechanisms, we comparatively analyzed the wheat–SWG amphiploid and its wheat parent grown in aerated and hypoxic solutions for physiological traits and root transcriptomes. Compared with its wheat parent, the amphiploid showed less magnitude in forming root porosity and barrier to radial oxygen loss, two important mechanisms for internal O2 movement to the apex, and downregulation of genes for ethylene, lignin, and reactive oxygen species. In another aspect, however, hypoxia stress upregulated the nitrate assimilation/reduction pathway in amphiploid and induced accumulation of nitric oxide, a byproduct of nitrate reduction, in its root tips, and the amphiploid maintained much higher metabolic activity in its root system compared with its wheat parent. Taken together, our research suggested that enhanced nitrate assimilation and reduction and accumulation of nitric oxide play important roles in the SWG-derived waterlogging tolerance.

Anatomical Adaptive Strategies to Flooding and Rhizosphere Oxidation in Mangrove Seedlings

1996 ◽  
Vol 44 (3) ◽  
pp. 297 ◽  
Author(s):  
T Youssef ◽  
P Saenger
Keyword(s):  
Root Surface ◽  
Limited Information ◽  
Ground Tissue ◽  
Radial Oxygen Loss ◽  
Waterlogging Tolerance ◽  
Mangrove Species ◽  
Root Porosity ◽  
Oxygen Loss ◽  
Diffusive Resistance ◽  
Mangrove Seedlings

Limited information exists on the relation between the capacity of mangrove seedlings to oxidise the rhizosphere and their differential waterlogging tolerance. Laboratory experiments were conducted to estimate radial oxygen loss (ROL) by the entire root, the area of oxidising sites (AOS) on the root surface, root porosity (POR), and the internal diffusive resistance in the ground tissue of seedlings of six mangrove species that show a differential response to flooding. Radial oxygen loss was extremely low in all viviparous seedlings (0.7-1.5 μmol O2 per cm2AOS per day). Differential tolerance of species coincided with the degree of porosity (14.8-45.7%) and the ability of seedlings to develop barriers to oxygen leakage on the root surface. The percentage area of lacunae in the ground tissue of seedlings of the four viviparous species revealed a constriction of the air flow path at the hypocotyl junction. These findings suggest that: (i) the differential tolerance to waterlogging in mangrove seedlings is not simply based on their ability to oxidise the rhizosphere; (ii) the high diffusive resistance in the hypocotyl junction is likely to affect root aeration when the plant's access to air is limited by partial or total submergence; and (iii) waterlogging tolerance is probably a function of the strategy by which roots conserve oxygen to maintain aerobic metabolism for longer periods during submergence. Implications of these findings in seedlings are discussed in relation to other anatomical and morphological adaptations to waterlogging in mature mangroves.

Evaluation of root porosity and radial oxygen loss of disomic addition lines of Hordeum marinum in wheat

2017 ◽  
Vol 44 (4) ◽  
pp. 400 ◽  
Author(s):  
Dennis Konnerup ◽  
A. l. Imran Malik ◽  
A. K. M. R. Islam ◽  
Timothy David Colmer
Keyword(s):  
Triticum Aestivum L ◽  
Radial Oxygen Loss ◽  
Waterlogging Tolerance ◽  
Root Volume ◽  
Root Porosity ◽  
Oxygen Loss ◽  
Chromosome Addition ◽  
Disomic Addition Lines ◽  
Gas Volume ◽  
Root Aeration

Hordeum marinum Huds. is a waterlogging-tolerant wild relative of wheat (Triticum aestivum L.). Greater root porosity (gas volume per root volume) and formation of a barrier to reduce root radial O2 loss (ROL) contribute to the waterlogging tolerance of H. marinum and these traits are evident in some H. marinum–wheat amphiploids. We evaluated root porosity, ROL patterns and tolerance to hypoxic stagnant conditions for 10 various H. marinum (two accessions) disomic chromosome addition (DA) lines in wheat (two varieties), produced from two H. marinum–wheat amphiploids and their recurrent wheat parents. None of the DA lines had a barrier to ROL or higher root porosity than the wheat parents. Lack of a root ROL barrier in the six DA lines for H. marinum accession H21 in Chinese Spring (CS) wheat indicates that the gene(s) for this trait do not reside on one of these six chromosomes; unfortunately, chromosome 3 of H. marinum has not been isolated in CS. Unlike the H21–CS amphiploid, which formed a partial ROL barrier in roots, the H90–Westonia amphiploid and the four derived DA lines available did not. The unaltered root aeration traits in the available DA lines challenge the strategy of using H. marinum as a donor of these traits to wheat.

scholarly journals Characterization of the Survival Influential Genes in Carcinogenesis

2021 ◽  
Vol 22 (9) ◽  
pp. 4384
Author(s):  
Divya Sahu ◽  
Yu-Lin Chang ◽  
Yin-Chen Lin ◽  
Chen-Ching Lin
Keyword(s):  
Cell Cycle ◽  
Cox Regression ◽  
Monte Carlo Algorithm ◽  
Functional Modules ◽  
Protective Genes ◽  
Cancer Types ◽  
Underlying Mechanisms ◽  
Patient Prognosis ◽  
Pan Cancer

The genes influencing cancer patient mortality have been studied by survival analysis for many years. However, most studies utilized them only to support their findings associated with patient prognosis: their roles in carcinogenesis have not yet been revealed. Herein, we applied an in silico approach, integrating the Cox regression model with effect size estimated by the Monte Carlo algorithm, to screen survival-influential genes in more than 6000 tumor samples across 16 cancer types. We observed that the survival-influential genes had cancer-dependent properties. Moreover, the functional modules formed by the harmful genes were consistently associated with cell cycle in 12 out of the 16 cancer types and pan-cancer, showing that dysregulation of the cell cycle could harm patient prognosis in cancer. The functional modules formed by the protective genes are more diverse in cancers; the most prevalent functions are relevant for immune response, implying that patients with different cancer types might develop different mechanisms against carcinogenesis. We also identified a harmful set of 10 genes, with potential as prognostic biomarkers in pan-cancer. Briefly, our results demonstrated that the survival-influential genes could reveal underlying mechanisms in carcinogenesis and might provide clues for developing therapeutic targets for cancers.

scholarly journals Transcriptome-based identification and characterization of genes responding to imidacloprid in Myzus persicae

2019 ◽  
Vol 9 (1) ◽  
Author(s):  
Jianyu Meng ◽  
Xingjiang Chen ◽  
Changyu Zhang
Keyword(s):  
Genetic Basis ◽  
Expression Profiles ◽  
Control Measure ◽  
Effective Control ◽  
Agricultural Pest ◽  
Functional Classification ◽  
Quantitative Real Time Pcr ◽  
Underlying Mechanisms ◽  
Identification And Characterization

Abstract Myzus persicae is a serious and widespread agricultural pest, against which, imidacloprid remains an effective control measure. However, recent reports indicate that this aphid has evolved and developed resistance to imidacloprid. This study aimed to elucidate the underlying mechanisms and genetic basis of this resistance by conducting comparative transcriptomics studies on both imidacloprid-resistant (IR) and imidacloprid-susceptible (IS) M. persicae. The comparative analysis identified 252 differentially expressed genes (DEGs) among the IR and IS M. persicae transcriptomes. These candidate genes included 160 and 92 genes that were down- and up-regulated, respectively, in the imidacloprid-resistant strain. Using functional classification in the GO and KEGG databases, 187 DEGs were assigned to 303 functional subcategories and 100 DEGs were classified into 45 pathway groups. Moreover, several genes were associated with known insecticide targets, cuticle, metabolic processes, and oxidative phosphorylation. Quantitative real-time PCR of 10 DEGs confirmed the trends observed in the RNA sequencing expression profiles. These findings provide a valuable basis for further investigation into the complicated mechanisms of imidacloprid resistance in M. persicae.

scholarly journals Trichoderma asperelloides Suppresses Nitric Oxide Generation Elicited by Fusarium oxysporum in Arabidopsis Roots

2014 ◽  
Vol 27 (4) ◽  
pp. 307-314 ◽  
Author(s):  
Kapuganti J. Gupta ◽  
Luis A. J. Mur ◽  
Yariv Brotman
Keyword(s):  
Nitric Oxide ◽  
Fusarium Oxysporum ◽  
No Production ◽  
Disease Development ◽  
Necrotrophic Pathogen ◽  
Trichoderma Spp ◽  
Promote Plant Growth ◽  
Induced Genes ◽  
Underlying Mechanisms ◽  
Lectin Protein

Inoculations with saprophytic fungus Trichoderma spp. are now extensively used both to promote plant growth and to suppress disease development. The underlying mechanisms for both roles have yet to be fully described so that the use of Trichoderma spp. could be optimized. Here, we show that Trichoderma asperelloides effects include the manipulation of host nitric oxide (NO) production. NO was rapidly formed in Arabidopsis roots in response to the soil-borne necrotrophic pathogen Fusarium oxysporum and persisted for about 1 h but is only transiently produced (approximately 10 min) when roots interact with T. asperelloides (T203). However, inoculation of F. oxysporum–infected roots with T. asperelloides suppressed F. oxysporum–initiated NO production. A transcriptional study of 78 NO-modulated genes indicated most genes were suppressed by single and combinational challenge with F. oxysporum or T. asperelloides. Only two F. oxysporum–induced genes were suppressed by T. asperelloides inoculation undertaken either 10 min prior to or after pathogen infection: a concanavlin A-like lectin protein kinase (At4g28350) and the receptor-like protein RLP30. Thus, T. asperelloides can actively suppress NO production elicited by F. oxysporum and impacts on the expression of some genes reported to be NO-responsive. Of particular interest was the reduced expression of receptor-like genes that may be required for F. oxysporum–dependent necrotrophic disease development.

PHYSIOLOGIC AND MOLECULAR CHARACTERIZATION OF THE ROLE OF NITRIC OXIDE IN HEMORRHAGIC SHOCK

Shock ◽  
1997 ◽  
Vol 7 (3) ◽  
pp. 157-163 ◽  
Author(s):  
Edward Kelly ◽  
Nishit S. Shah ◽  
Nathan N. Morgan ◽  
Simon C. Watkins ◽  
Andrew B. Peitzman ◽  
...  
Keyword(s):  
Nitric Oxide ◽  
Hemorrhagic Shock ◽  
Molecular Characterization

scholarly journals A novel long intergenic non-coding RNA, Nostrill, regulates iNOS gene transcription and neurotoxicity in microglia

2021 ◽  
Vol 18 (1) ◽  
Author(s):  
Nicholas W. Mathy ◽  
Olivia Burleigh ◽  
Andrew Kochvar ◽  
Erin R. Whiteford ◽  
Matthew Behrens ◽  
...  
Keyword(s):  
Nitric Oxide ◽  
No Production ◽  
Cortical Tissue ◽  
Non Coding Rna ◽  
Transcriptional Regulatory ◽  
Lncrna Locus ◽  
Rna Immunoprecipitation ◽  
Long Non Coding Rna

Abstract Background Microglia are resident immunocompetent and phagocytic cells in the CNS. Pro-inflammatory microglia, stimulated by microbial signals such as bacterial lipopolysaccharide (LPS), viral RNAs, or inflammatory cytokines, are neurotoxic and associated with pathogenesis of several neurodegenerative diseases. Long non-coding RNAs (lncRNA) are emerging as important tissue-specific regulatory molecules directing cell differentiation and functional states and may help direct proinflammatory responses of microglia. Characterization of lncRNAs upregulated in proinflammatory microglia, such as NR_126553 or 2500002B13Rik, now termed Nostrill (iNOS Transcriptional Regulatory Intergenic LncRNA Locus) increases our understanding of molecular mechanisms in CNS innate immunity. Methods Microglial gene expression array analyses and qRT-PCR were used to identify a novel long intergenic non-coding RNA, Nostrill, upregulated in LPS-stimulated microglial cell lines, LPS-stimulated primary microglia, and LPS-injected mouse cortical tissue. Silencing and overexpression studies, RNA immunoprecipitation, chromatin immunoprecipitation, chromatin isolation by RNA purification assays, and qRT-PCR were used to study the function of this long non-coding RNA in microglia. In vitro assays were used to examine the effects of silencing the novel long non-coding RNA in LPS-stimulated microglia on neurotoxicity. Results We report here characterization of intergenic lncRNA, NR_126553, or 2500002B13Rik now termed Nostrill (iNOS Transcriptional Regulatory Intergenic LncRNA Locus). Nostrill is induced by LPS stimulation in BV2 cells, primary murine microglia, and in cortical tissue of LPS-injected mice. Induction of Nostrill is NF-κB dependent and silencing of Nostrill decreased inducible nitric oxide synthase (iNOS) expression and nitric oxide (NO) production in BV2 and primary microglial cells. Overexpression of Nostrill increased iNOS expression and NO production. RNA immunoprecipitation assays demonstrated that Nostrill is physically associated with NF-κB subunit p65 following LPS stimulation. Silencing of Nostrill significantly reduced NF-κB p65 and RNA polymerase II recruitment to the iNOS promoter and decreased H3K4me3 activating histone modifications at iNOS gene loci. In vitro studies demonstrated that silencing of Nostrill in microglia reduced LPS-stimulated microglial neurotoxicity. Conclusions Our data indicate a new regulatory role of the NF-κB-induced Nostrill and suggest that Nostrill acts as a co-activator of transcription of iNOS resulting in the production of nitric oxide by microglia through modulation of epigenetic chromatin remodeling. Nostrill may be a target for reducing the neurotoxicity associated with iNOS-mediated inflammatory processes in microglia during neurodegeneration.

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