scholarly journals Genetic Structure of Cultivated Varieties of Radicchio (Cichorium intybus L.): A Comparison between F1 Hybrids and Synthetics

Plants ◽  
2019 ◽  
Vol 8 (7) ◽  
pp. 213 ◽  
Author(s):  
Alice Patella ◽  
Francesco Scariolo ◽  
Fabio Palumbo ◽  
Gianni Barcaccia

Cichorium intybus L., well known in Italy with the common name “Radicchio”, is an important leafy vegetable that is prevalently reproduced by allogamy due to very efficient barriers of self-incompatibility. Marker-assisted breeding is widely used by seed firms to develop new hybrid varieties that manifest genetic distinctiveness, uniformity and stability. A total of 29 mapped microsatellite markers were used for genotyping 504 samples of the Red of Chioggia biotype: First, two synthetics, four F1 hybrids and two derived F2 populations were compared to assess the distinctiveness of their gene pool and structure; then, the uniformity and stability of 3 years of production of a commercial F1 variety were also investigated. Genetic similarity and diversity statistics as well as the genetic structure of populations were analysed, including allele and genotype frequencies. The mean estimates and ranges of genetic similarity enabled the molecular discrimination of OP synthetics from F1 varieties and their F2 progenies and the determination of individual plant memberships. Moreover, the genetic structure of F1 hybrids produced in 3 years unexpectedly revealed two main clusters that discriminate the first 2 years from the 3rd, mainly because of the presence of uncommon specific alleles and different allele frequencies. Overall, this molecular information will enable breeders to determine the genetic distinctness, uniformity and stability of commercial and experimental varieties, as well as their genetic relationships and relatedness. Hence, this work provides a useful tool for achieving the molecular characterisation and genetic identification of different radicchio populations.

The Auk ◽  
2000 ◽  
Vol 117 (3) ◽  
pp. 651-662 ◽  
Author(s):  
Corinne Rabouam ◽  
Vincent Bretagnolle ◽  
Yves Bigot ◽  
Georges Periquet

Abstract We used DNA fingerprinting to assess genetic structure of populations in Cory's Shearwater (Calonectris diomedea). We analyzed mates and parent-offspring relationships, as well as the amount and distribution of genetic variation within and among populations, from the level of subcolony to subspecies. We found no evidence of extrapair fertilization, confirming that the genetic breeding system matches the social system that has been observed in the species. Mates were closely related, and the level of genetic relatedness within populations was within the range usually found in inbred populations. In contrast to previous studies based on allozymes and mtDNA polymorphism, DNA fingerprinting using microsatellites revealed consistent levels of genetic differentiation among populations. However, analyzing the two subspecies separately revealed that the pattern of genetic variation among populations did not support the model of isolation by distance. Natal dispersal, as well as historic and/or demographic events, probably contributed to shape the genetic structure of populations in the species.


2021 ◽  
Vol 158 ◽  
pp. 16351-16362
Author(s):  
Mariama FAYE ◽  
Awa NDIAYE ◽  
Ibrahima DIALLO ◽  
Pape Mbacké SEMBENE

Objectives: the study examines the effect of the host plant and of the agro-ecological area on the genetic structure of populations of Bactrocera dorsalis in order to apprehend an appropriate period to fight this pest. Methodology and results: this study was conducted in two large areas mango productions Senegal (area Niayes and the forest area South) on 41 individuals of Bactrocera dorsalis with mitochondrial gene sequencing (cytochrome B). Several haplotypes (28) of which 27 individual have been identified with a high level of genetic diversity (Hd 0.972 and Pi 0.1563). The genetic demo tests suggested a population in equilibrium, a moderate expansion and a grouping according to the areas thus revealing a genetic structure linked to the localities. In addition, the haplotype network showed a majority haplotype comprising all areas, 24 individual haplotypes and a typical haplotype to Notto. Conclusion and application of findings : this exploratory study was in addition to having provided information on the genetic characterization of the species Bactrocera dorsalis , describes its structure and its genetic differentiation based on two areas - ecological where mango is practically cultivated in Senegal . It helped to understand the genetic identity card of the species Bactrocera dorsalis, whose purpose will be to know its weakest link and food preferences to provide alternative struggles. Keywords: Bactrocera dorsalis, Niayes, lower Casamance, mangoes, citrus, PCR, sequencing, cytochrome B


2017 ◽  
Vol 54 ◽  
pp. 216-221 ◽  
Author(s):  
Yu. V. Gyzieev ◽  
О. V. Sydorenko ◽  
L. V. Vishnevsky

In Ukraine, especially in certain natural and climatic zones, an important role in the production of food and social life of the population is played by the Carpathian Brown breed of cattle that extremely efficiently uses the natural pastures of the Carpathians. Animals of this breed have unique biological characteristics, resistant to diseases, have high resistance, the ability to withstand stress, have a strong constitution, a high duration of productive use, reproductive and adaptive ability, the content of protein in milk, available for chewing the kappa-casein fraction, good parameters for realization of genetic potential. The Carpathian Brown cattle with its high adaptability to the environment deserve the preservation and sustainable use, and for this purpose it is necessary to create a reliable genetic foundation. Moreover, it is important to know the genetic features of animals that are intended to produce specific products and still remain a significant functional element of the production system in the region. The gene kappa-casein is one of the few known genes, is uniquely associated with the signs of protein digestibility and technological properties of milk. Allele In the kappa-casein gene is associated with a higher protein content in milk, a higher yield of cheese, as well as better coagulation properties of milk. The purpose of this work was to establish the genotypes and to determine the genetic structure of the population of the Carpathian Brown breeders for the gene of kappa-casein (CSN3) with the determination of the possibility of their further use. The material for research was the semen of the bulls of Carpathian Brown breed (n = 21 heads), which originate from the leading tribal herds of the Zakarpattia oblast and evaluated by origin, by their own productivity at the Zakarpattia Regional State Tribal Station (now Private Joint-stock company "Zakarpatske plempidpryyemstvo"). In accordance with FAO recommendations for assessing the risk status of animal genetic resources and calculations carried out, a brown Carpathian breed of cattle is in the critical state of risk of disappearance. This status depends on the effective size of the population, the number of females and males, trends in the dynamics of their changes and the way breeder breeding work. In 2005 in 16 controllable herds of Zakarpattia and Ivano-Frankivsk oblasts there were 2866 heads of cattle of Carpathian Brown breed, including 1083 cows. And since 2014 according to the State Register of subjects of breeding business in livestock breeding, no breeding farm has left in Ukraine for breeding this kind of breed and there is no program of breeding the pedigrees. The breeding stock of Carpathian Brown breed is breeding only in private peasant farms. According to FAO recommendations, a part of the genetic material from the breeders of the brown Carpathian breed that belongs to Private Joint-stock company "Zakarpatske plempidpryyemstvo" was deposited in the Bank of Animals of Genetic Resources of Institute of Animal Breeding and Genetics nd. a. M.V.Zubets of NAAS. According to the data provided in the section "Reserve gene pool" of the Catalog of bulls of dairy and dairy-meat breeds, allowed to reproduce the mother stock in 2017, information is provided on 28 bulls of Carpathian Brown breed with available semen. Therefore, taking into account the results of the monitoring and analysis carried out, it should be noted that the possibility of restoration of the stock breed stock of Carpathian Brown breed has not been lost. Carpathian Brown breed as a local breed requires systematic population-genetic monitoring. The genetic material of the breeders of Carpathian Brown breed according to the genealogical structure is diverse and belongs to 12 lines. The most numerous representatives of the fruit of the lines of the Sokola 553 i Malchyka 3, Kaplera 43, Stretcha 143612, Fitsko 33, Pishty 10, Eleyma 110327, Raneta 584, Rupora 6507, Siroho 1759, Shoni 6 i Yu. Yuvelira 273, which at one time were the most widespread in the breed. Representatives of these lines for the CSN3 gene revealed polymorphism of all possible variants of the genotypes AA, AB and BB. According to the results of molecular genetic analysis, determination of frequency of distribution of genotypes and alleles of bulls of Carpathian Brown breed according to the gene of kapa-casein CSN3 has been determined. The frequency of the desired genotype BB among the examined animals was 0.143, and the frequency of carriers of the genotype AA was 0.381. Frequency of carriers of the heterozygous genotype AB was 0.476. The carrier frequency of the allele A in the animals tested is 0.619, which is twice as high as the allele B frequency of 0.381. By Hardy-Weinberg law, we did not determine the probable difference between the actual and expected distribution of genotype frequencies for the CSN3 gene. Conclusions on the basis of the analysis of the established genotypes and the determined frequency of allelic variants for the kappa-casein (CSN3) gene in the explored bogs of Carpathian Brown breed Private Joint-stock company "Zakarpatske plempidpryyemstvo" it was revealed that the available genetic resources of the pedigrees are quite varied according to the genealogical and genetic structure.


2019 ◽  
Vol 60 (4) ◽  
pp. 555-562
Author(s):  
In Seok Um ◽  
Min Ju Lee ◽  
Ju Hee Nam ◽  
Sun Yi Lee ◽  
Do Sun Kim ◽  
...  

OENO One ◽  
2012 ◽  
Vol 46 (2) ◽  
pp. 113 ◽  
Author(s):  
Teodora Dzhambazova ◽  
Ivan Tsvetkov ◽  
Ilian Simeonov ◽  
Miroslav Ivanov ◽  
Zdravko Nakov ◽  
...  

<p style="text-align: justify;"><strong>Aim</strong>: Assessment of the genetic diversity and relationships in a group of 31 Bulgarian grape accessions through microsatellite markers.</p><p style="text-align: justify;"><strong>Methods and results</strong>: Thirty-one accessions, including 20 old rare local and 11 newly bred varieties were characterized through 13 nuclear and 5 chloroplast microsatellite loci. The genetic diversity (0.81±0.01) obtained for the investigated group of cultivars was comparable to those reported for other grapevine germplasms. The low PI value (1.0x10<sup>-16</sup>) allowed proper genetic identification and determination of synonyms. Microsatellite analysis of the 31 accessions resulted in 26 unique genotypes and 2 groups of synonyms. Four cases of supposed synonymy with local Bulgarian and foreign cultivars were rejected. Three chlorotypes, B, C and D, were defined among the studied cultivars, with a prevalence of chlorotype C (62%).</p><p style="text-align: justify;"><strong>Conclusion</strong>: The high genetic diversity found in the set of old rare grapevines demonstrated their importance as a rich source of alleles for breeding. The pattern of chlorotype distribution observed among local varieties confirmed the previous results and supports the hypothesis of an Eastern origin of local Bulgarian cultivars.</p><p style="text-align: justify;"><strong>Significance and impact of the study</strong>: The obtained results provide an important support for the preservation of grape biodiversity in Bulgaria as well as for the clarification of genetic relationships between local and foreign cultivars.</p>


2019 ◽  
Vol 109 (9) ◽  
pp. 1614-1627 ◽  
Author(s):  
Amanda Saville ◽  
Jean Beagle Ristaino

The oomycete Phytophthora infestans is an important plant pathogen on potato and tomato crops. We examined the genetic structure of extant 20th and 21st century U.S. lineages of P. infestans and compared them with populations from South America and Mexico to examine genetic relationships and potential sources of lineages. US-23, currently the most prevalent lineage detected in the United States, shared genetic similarity primarily with the BR-1 lineage identified in the 1990s from Bolivia and Brazil. Lineages US-8, US-14, and US-24, predominantly virulent on potato, formed a cluster distinct from other U.S. lineages. Many of the other U.S. lineages shared significant genetic similarity with Mexican populations. The US-1 lineage, dominant in the mid-20th century, clustered with US-1 lineages from Peru. A survey of the presence of RXLR effector PiAVR2 revealed that some lineages carried PiAVR2, its resistance-breaking variant PiAVR2-like, or both. Minimum spanning networks developed from simple sequence repeat genotype datasets from USABlight outbreaks clearly showed the expansion of US-23 over a 6-year time period and geographic substructuring of some lineages in the western United States. Many clonal lineages of P. infestans in the United States have come from introductions from Mexico, but the US-23 and US-1 lineages were most likely introduced from other sources.


2017 ◽  
pp. 85
Author(s):  
Adriana Otero-Arnaiz ◽  
Marlene De la Cruz ◽  
Ken Oyama

In this paper a review of RAPDs (Random Amplified Polymorphic DNA) as molecular markers is presented. This molecular marker has been used to genetic mapping, population genetic structure, genetic identification, intra and interspecific variation, reconstructing phylogenies and conservation biology. In general, RAPDs have been useful to estimate genetic diversity, genetic identification of taxa, clones, varieties and hybrids. However, their use in Systematic has been questioned due to the difficulties in the determination of identity, homologies and independence of characters. Methods of analyses used to estimate genetic diversity are briefly described. Finally, some recent advances and new technics based on PCR are presented.


Author(s):  
Т.В. Никитина ◽  
А.А. Кашеварова ◽  
М.М. Гридина ◽  
А.А. Хабарова ◽  
А.Г. Мензоров ◽  
...  

Митотическая нестабильность кольцевых хромосом может приводить к появлению клеточных клонов с различной генетической структурой. В качестве модели нестабильности кольцевых хромосом в митозе мы использовали фибробласты от пациентов с r(8), r(13), r(18) и r(22) и полученные из них индуцированные плюрипотентные стволовые клетки (ИПСК). Линии ИПСК с r(22) имели относительно стабильный кариотип на протяжении десятков (до 60) пассажей и сохраняли неизменную структуру кольцевой хромосомы. Кариотип линий ИПСК с r(8) и r(18) на ранних пассажах стабильный, планируется его изучение на поздних пассажах. Наибольшее разнообразие кариотипа выявлено в линиях ИПСК с r(13), в которых наблюдали различные перестройки и выраженную клеточную гетерогенность. Определение факторов, влияющих на митотическую стабильность кольцевых хромосом, может иметь значение для консультирования пациентов. Mitotic instability of ring chromosomes can lead to the appearance of cell clones with different genetic structure. IPSCs from fibroblasts of patients with r(8), r(13), r(18), and r(22) were used as a model of ring chromosomes mitotic behavior. Karyotypes of iPSC lines with r(8) and r(18) have so far been evaluated only in the early passages, lines with r(22) have maintained a relatively stable karyotype up to 60 passages. The occurrence of rearrangements and cellular heterogeneity was found characteristic for r(13) iPSCs. The determination of factors affecting the ring chromosomes mitotic stability would be beneficial for the patient’s prognosis.


Genes ◽  
2021 ◽  
Vol 12 (3) ◽  
pp. 383
Author(s):  
Aornpriya Mawan ◽  
Nonglak Prakhun ◽  
Kanha Muisuk ◽  
Suparat Srithawong ◽  
Metawee Srikummool ◽  
...  

The hill tribes of northern Thailand comprise nine officially recognized groups: the Austroasiatic-speaking (AA) Khmu, Htin and Lawa; the Hmong-Mien-speaking (HM) IuMien and Hmong; and the Sino-Tibetan-speaking (ST) Akha, Karen, Lahu and Lisu. Except the Lawa, the rest of the hill tribes migrated into their present habitats only very recently. The Thai hill tribes were of much interest to research groups focusing on study of cultural and genetic variation because of their unique languages and cultures. So far, there have been several genetic studies of the Thai hill tribes. However, complete forensic microsatellite database of the Thai hill tribes is still lacking. To construct such database, we newly generated 654 genotypes of 15 microsatellites commonly used in forensic investigation that belong to all the nine hill tribes and also non-hill tribe highlanders from northern Thailand. We also combined 329 genotypes from previous studies of northern Thai populations bringing to a total of 983 genotypes, which were then subjected to genetic structure and population relationships analyses. Our overall results indicated homogenous genetic structure within the HM- and Tai-Kadai (TK)-speaking groups, large genetic divergence of the HM-speaking Hmong but not IuMien from the other Thai groups, and genetic heterogeneity within the ST- and AA-speaking groups, reflecting different population interactions and admixtures. In addition to establishing genetic relationships within and among these populations, our finding, which provides a more complete picture of the forensic microsatellite database of the multiple Thai highland dwellers, would not only serve to expand and strengthen forensic investigation in Thailand, but would also benefit its neighboring countries of Laos and Myanmar, from which many of the Thai hill tribes originated and where large populations of these ethnic groups still reside.


Plants ◽  
2021 ◽  
Vol 10 (7) ◽  
pp. 1424
Author(s):  
Magdalena Cieplak ◽  
Sylwia Okoń ◽  
Krystyna Werwińska

The assessment of the genetic diversity of cultivated varieties is a very important element of breeding programs. This allows the determination of the level of genetic differentiation of cultivated varieties, their genetic distinctiveness, and is also of great importance in the selection of parental components for crossbreeding. The aim of the present study was to determine the level of genetic diversity of oat varieties currently grown in Central Europe based on two marker systems: ISSR and SCoT. The research conducted showed that both these types of markers were suitable for conducting analyses relating to the assessment of genetic diversity. The calculated coefficients showed that the analyzed cultivars were characterized by a high genetic similarity. However, the UPGMA and PCoA analyses clearly indicated the distinctiveness of the breeding programs conducted in Central European countries. The high genetic similarity of the analyzed forms allow us to conclude that it is necessary to expand the genetic pool of oat varieties. Numerous studies show that landraces may be the donor of genetic variation.


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