scholarly journals Dissolved Organic Matter Quality and Biofilm Composition Affect Microbial Organic Matter Uptake in Stream Flumes

Water ◽  
2020 ◽  
Vol 12 (11) ◽  
pp. 3246
Author(s):  
Gabriele Weigelhofer ◽  
Tania Sosa Jirón ◽  
Tz-Ching Yeh ◽  
Gertraud Steniczka ◽  
Matthias Pucher

Agriculture delivers significant amounts of dissolved organic matter (DOM) to streams, thereby changing the composition and biodegradability of the aquatic DOM. This study focuses on the interactive effects of DOM quality and biofilm composition on the degradation of DOM in a laboratory flume experiment. Half of the flumes were exposed to light to stimulate algal growth, the other half was shaded. Leachates of deciduous leaves, maize leaves, and cow dung were added to the flumes in a single pulse and changes of DOC (dissolved organic carbon) and nutrient concentrations, DOM composition (absorbance and fluorescence data), chlorophyll-a concentrations, bacterial abundances, and enzymatic activities were recorded over a week. DOM was taken up with rates of 50, 109, and 136 µg DOC L−1 h−1 for dung, leaf, and maize leachates, respectively, in the light flumes and 37, 80, and 170 µg DOC L−1 h−1 in the dark flumes. DOC uptake correlated strongly with initial SRP (soluble reactive phosphorus) and DOC concentrations, but barely with DOM components and indices. Algae mostly stimulated the microbial DOC uptake, but the effects differed among differently aged biofilms. We developed a conceptual model of intrinsic (DOM quality) and external (environmental) controlling factors on DOM degradation, with the microbial community acting as biotic filter.

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Brice K. Grunert ◽  
Maria Tzortziou ◽  
Patrick Neale ◽  
Alana Menendez ◽  
Peter Hernes

AbstractThe Arctic is experiencing rapid warming, resulting in fundamental shifts in hydrologic connectivity and carbon cycling. Dissolved organic matter (DOM) is a significant component of the Arctic and global carbon cycle, and significant perturbations to DOM cycling are expected with Arctic warming. The impact of photochemical and microbial degradation, and their interactive effects, on DOM composition and remineralization have been documented in Arctic soils and rivers. However, the role of microbes, sunlight and their interactions on Arctic DOM alteration and remineralization in the coastal ocean has not been considered, particularly during the spring freshet when DOM loads are high, photoexposure can be quite limited and residence time within river networks is low. Here, we collected DOM samples along a salinity gradient in the Yukon River delta, plume and coastal ocean during peak river discharge immediately after spring freshet and explored the role of UV exposure, microbial transformations and interactive effects on DOM quantity and composition. Our results show: (1) photochemical alteration of DOM significantly shifts processing pathways of terrestrial DOM, including increasing relative humification of DOM by microbes by > 10%; (2) microbes produce humic-like material that is not optically distinguishable from terrestrial humics; and (3) size-fractionation of the microbial community indicates a size-dependent role for DOM remineralization and humification of DOM observed through modeled PARAFAC components of fluorescent DOM, either through direct or community effects. Field observations indicate apparent conservative mixing along the salinity gradient; however, changing photochemical and microbial alteration of DOM with increasing salinity indicate changing DOM composition likely due to microbial activity. Finally, our findings show potential for rapid transformation of DOM in the coastal ocean from photochemical and microbial alteration, with microbes responsible for the majority of dissolved organic matter remineralization.


2008 ◽  
Vol 5 (2) ◽  
pp. 281-298 ◽  
Author(s):  
P. Raimbault ◽  
N. Garcia ◽  
F. Cerutti

Abstract. During the BIOSOPE cruise the RV Atalante was dedicated to study the biogeochemical properties in the South Pacific between the Marquesas Islands (141° W–8° S) and the Chilean upwelling (73° W–34° S). Over the 8000 km covered by the cruise, several different trophic situations were encountered, in particular strong oligotrophic conditions in the South Pacific Gyre (SPG, between 123° W and 101° W). In this isolated region, nitrate was undetectable between the surface and 160–180 m and only trace quantities (<20 nmoles l−1) of regenerated nitrogen (nitrite and ammonium) were detected, even in the subsurface maximum. Integrated nitrate over the photic layer, which reached 165 m, was close to zero. Despite this severe nitrogen-depletion, phosphate was always present in significant concentrations (≈0.1 μmoles l−1), while silicic acid was maintained at low but classical oceanic levels (≈1 μmoles l−1). In contrast, the Marquesas region (MAR) to the west and Chilean upwelling (UPW) to the east were characterized by high nutrient concentrations, one hundred to one thousand fold higher than in the SPG. The distribution of surface chlorophyll reflected the nitrate gradient, the lowest concentrations (0.023 nmoles l−1) being measured at the centre of the SPG, where integrated value throughout the photic layer was very low (≈ 10 mg m−2). However, due to the relatively high concentrations of chlorophyll-a encountered in the DCM (0.2 μg l−1), chlorophyll-a concentrations throughout the photic layer were less variable than nitrate concentrations (by a factor 2 to 5). In contrast to chlorophyll-a, integrated particulate organic matter (POM) remained more or less constant along the study area (500 mmoles m−2, 60 mmoles m−2 and 3.5 mmoles m−2 for particulate organic carbon, particulate organic nitrogen and particulate organic phosphorus, respectively), with the exception of the upwelling, where values were two fold higher. The residence time of particulate carbon in the surface water was only 4–5 days in the upwelling, but up to 30 days in the SPG, where light isotopic δ15N signal noted in the suspended POM suggests that N2-fixation provides a dominant supply of nitrogen to phytoplankton. The most striking feature was the large accumulation of dissolved organic matter (DOM) in the SPG compared to the surrounding waters, in particular dissolved organic carbon (DOC) where concentrations were at levels rarely measured in oceanic waters (>100 μmoles l−1). Due to this large pool of DOM in the SPG photic layer, integrated values followed a converse geographical pattern to that of inorganic nutrients with a large accumulation in the centre of the SPG. Whereas suspended particulate matter in the mixed layer had a C/N ratio largely conforming to the Redfield stochiometry (C/N≈6.6), marked deviations were observed in this excess DOM (C/N≈16 to 23). The marked geographical trend suggests that a net in situ source exists, mainly due to biological processes. Thus, in spite of strong nitrate-depletion leading to low chlorophyll biomass, the closed ecosystem of the SPG can accumulate large amounts of C-rich dissolved organic matter. The implications of this finding are examined, the conclusion being that, due to weak lateral advection, the biologically produced dissolved organic carbon can be accumulated and stored in the photic layer for very long periods. In spite of the lack of seasonal vertical mixing, a significant part of new production (up to 34%), which was mainly supported by dinitrogen fixation, can be exported to deep waters by turbulent diffusion in terms of DOC. The diffusive rate estimated in the SPG (134 μmolesC m−2 d−1), was quite equivalent to the particles flux measured by sediments traps.


2019 ◽  
Vol 193 (2) ◽  
pp. 131-142
Author(s):  
Verónica Díaz-Villanueva

Forest streams receive large amounts of leaves whose leachates are an important source of dissolved organic matter (DOM), providing not only carbon but also organic nutrients to the microbial communities in streams. I carried out a field study to evaluate the effect of different DOM concentrations on the biofilm structure and functional traits in two similar forest streams belonging to the same catchment. I compared biofilm biomass and nutri- ent content throughout one year, algal species composition, and biofilm community-level physiological profiles in two streams with different DOM concentration and aromaticity. Dissolved nutrient concentrations were higher in the stream with higher DOM concentration, with a concomitant higher biofilm biomass, and there was also a temporal pattern, with higher values during the autumn. Phosphorus content in biofilms was also higher in the high DOM stream, coincidently with a higher capacity of the community to utilize organic P source (glucose-1-P) as a substrate. In contrast, the biofilms from the stream with lower DOM concentrations preferentially used N-organic substrates (amino acids and amines). These results reveal that the biofilms of forest streams make use of organic matter nutrients, so that streams with different DOM loads may differ in biofilm biomass due to changes in both bacterial and autotrophic biomass. In addition, biofilm dynamics may be related to forest phenology, as the highest OM input in this deciduous forest is represented by tree leaves, which supply DOM through leachates, and in particular, with P-rich leachates. In conclusion, different DOM concentrations in two nearby streams led to differences in the community-level physiological profile, as has been previously demonstrated at larger spatial scales in oceans, lakes and along larger rivers.


2012 ◽  
Vol 9 (11) ◽  
pp. 4263-4278 ◽  
Author(s):  
N. Welti ◽  
E. Bondar-Kunze ◽  
M. Mair ◽  
P. Bonin ◽  
W. Wanek ◽  
...  

Abstract. Floodplain restoration changes the nitrate delivery pattern and dissolved organic matter pool in backwaters, though the effects these changes have are not yet well known. We performed two mesocosm experiments on floodplain sediments to quantify the nitrate metabolism in two types of floodplains. Rates of denitrification, dissimilatory nitrate reduction to ammonium (DNRA) and anammox were measured using 15N-NO3 tracer additions in mesocosms of undisturbed floodplain sediments originating from (1) restored and (2) disconnected sites in the Alluvial Zone National Park on the Danube River downstream of Vienna, Austria. DNRA rates were an order of magnitude lower than denitrification and neither rate was affected by changes in nitrate delivery pattern or organic matter quality. Anammox was not detected at any of the sites. Denitrification was out-competed by assimilation, which was estimated to use up to 70% of the available nitrate. Overall, denitrification was higher in the restored sites, with mean rates of 5.7 ± 2.8 mmol N m−2 h−1 compared to the disconnected site (0.6 ± 0.5 mmol N m−2 h−1). In addition, ratios of N2O : N2 were lower in the restored site indicating a more complete denitrification. Nitrate addition had neither an effect on denitrification, nor on the N2O : N2 ratio. However, DOM (dissolved organic matter) quality significantly changed the N2O : N2 ratio in both sites. Addition of riverine-derived organic matter lowered the N2O : N2 ratio in the disconnected site, whereas addition of floodplain-derived organic matter increased the N2O : N2 ratio in the restored site. These results demonstrate that increasing floodplains hydrological connection to the main river channel increases nitrogen retention and decreases nitrous oxide emissions.


2010 ◽  
Vol 41 (11) ◽  
pp. 1177-1188 ◽  
Author(s):  
Jennifer J. Mosher ◽  
Geoffrey C. Klein ◽  
Alan G. Marshall ◽  
Robert H. Findlay

2010 ◽  
Vol 61 (10) ◽  
pp. 1197 ◽  
Author(s):  
María Fernanda Adame ◽  
Bernardino Virdis ◽  
Catherine E. Lovelock

One of the key ecosystem services provided by mangroves is their role in mediating nutrient exchange, thereby protecting coastal ecosystems from negative impacts of nutrient enrichment. In this study, we tested whether geomorphological setting and level of rainfall affect the intensity and direction of nutrient exchange. Our hypotheses were that tidal mangroves retain more nutrients than riverine mangroves and that nutrient retention is stronger during periods of high rainfall. Concentrations of soluble reactive phosphorus (SRP), nitrogen oxides (NOx–-N) and ammonium (NH4+) were measured from water entering and leaving the mangroves during tidal cycles. Our results show that nutrient concentrations were higher in the flood tide compared with the ebb tide by up to 28% for NOx–-N, 51% for SRP and 83% for NH4+, suggesting retention by the mangroves. Geomorphological setting determined nutrient exchange to some extent, with some riverine sites receiving more nutrients than tidal sites and thus, being more important in nutrient retention. Rainfall was important in determining nutrient exchange as it enhanced SRP and NH4+ retention. These results show that mangroves can improve water quality of creeks and rivers, and underscore the need for conservation of mangroves over a range of geomorphological settings.


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