scholarly journals Phycocyanin Monitoring in Some Spanish Water Bodies with Sentinel-2 Imagery

Water ◽  
2021 ◽  
Vol 13 (20) ◽  
pp. 2866
Author(s):  
Rebeca Pérez-González ◽  
Xavier Sòria-Perpinyà ◽  
Juan Miguel Soria ◽  
Jesús Delegido ◽  
Patricia Urrego ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Root Mean Square Error ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Water Bodies ◽  
World Health ◽  
Mean Square ◽  
Monitoring Method ◽  
And Control ◽  
Sentinel 2

Remote sensing is an appropriate tool for water management. It allows the study of some of the main sources of pollution, such as cyanobacterial harmful algal blooms. These species are increasing due to eutrophication and the adverse effects of climate change. This leads to water quality loss, which has a major impact on the environment, including human water supplies, which consequently require more expensive purification processes. The application of satellite remote sensing images as bio-optical tools is an effective way to monitor and control phycocyanin concentrations, which indicate the presence of cyanobacteria. For this study, 90 geo-referenced phycocyanin measurements were performed in situ, using a Turner C3 Submersible Fluorometer and a laboratory spectrofluorometer, both calibrated with phycocyanin standard, in water bodies of the Iberian Peninsula. These samples were synchronized with Sentinel-2 satellite orbit. The images were processed using Sentinel Application Program software and corrected with the Case 2 Regional Coast color-extended atmospheric correction tool. To produce algorithms that would help to obtain the phycocyanin concentration from the reflectance measured by the multispectral instrument sensor of the satellite, the following band combinations were tested, among others: band 665 nm, band 705 nm, and band 740 nm. The samples were equally divided: half were used for the algorithm’s calibration, and the other half for its validation. With the best adjustment, the algorithm was made more robust and accurate through a recalculation, obtaining a determination coefficient of 0.7, a Root Mean Square Error of 8.1 µg L−1, and a Relative Root Mean Square Error of 19%. In several reservoirs, we observed alarming phycocyanin concentrations that may trigger many environmental health problems, as established by the World Health Organization. Remote sensing provides a rapid monitoring method for the temporal and spatial distribution of these cyanobacteria blooms to ensure good preventive management and control, in order to improve the environmental quality of inland waters.

scholarly journals A COMPARISON OF MACHINE LEARNING MODELS FOR SOIL SALINITY ESTIMATION USING MULTI-SPECTRAL EARTH OBSERVATION DATA

2021 ◽  
Vol V-3-2021 ◽  
pp. 257-263
Author(s):  
A. Zarei ◽  
M. Hasanlou ◽  
M. Mahdianpari
Keyword(s):  
Machine Learning ◽  
Remote Sensing ◽  
Root Mean Square Error ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Soil Salinity ◽  
Field Data ◽  
Observation Data ◽  
Mean Square ◽  
Sentinel 2

Abstract. Soil salinity, a significant environmental indicator, is considered one of the leading causes of land degradation, especially in arid and semi-arid regions. In many cases, this major threat leads to loss of arable land, reduces crop productivity, groundwater resources loss, increases economic costs for soil management, and ultimately increases the probability of soil erosion. Monitoring soil salinity distribution and degree of salinity and mapping the electrical conductivity (EC) using remote sensing techniques are crucial for land use management. Salt-effected soil is a predominant phenomenon in the Eshtehard Salt Lake located in Alborz, Iran. In this study, the potential of Sentinel-2 imagery was investigated for mapping and monitoring soil salinity. According to the satellite's pass, different salt properties were measured for 197 soil samples in the field data study. Therefore several spectral features, such as satellite band reflectance, salinity indices, and vegetation indices, were extracted from Sentinel-2 imagery. To build an optimum machine learning regression model for soil salinity estimation, three different regression models, including Gradient Boost Machine (GBM), Extreme Gradient Boost (XGBoost), and Random Forest (RF), were used. The XGBoostmethod outperformed GBM and RF with the coefficient of determination (R2) more than 76%, Root Mean Square Error (RMSE) about 0.84 dS m−1, and Normalized Root Mean Square Error (NRMSE) about 0.33 dS m−1. The results demonstrated that the integration of remote sensing data, field data, and using an appropriate machine learning model could provide high-precision salinity maps to monitor soil salinity as an environmental problem.

scholarly journals Estimation of Apple Flowering Frost Loss for Fruit Yield Based on Gridded Meteorological and Remote Sensing Data in Luochuan, Shaanxi Province, China

2021 ◽  
Vol 13 (9) ◽  
pp. 1630
Author(s):  
Yaohui Zhu ◽  
Guijun Yang ◽  
Hao Yang ◽  
Fa Zhao ◽  
Shaoyu Han ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Root Mean Square Error ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Minimum Temperature ◽  
Price Regulation ◽  
Flowering Period ◽  
Mean Square ◽  
Prevention Measures ◽  
Agricultural Insurance

With the increase in the frequency of extreme weather events in recent years, apple growing areas in the Loess Plateau frequently encounter frost during flowering. Accurately assessing the frost loss in orchards during the flowering period is of great significance for optimizing disaster prevention measures, market apple price regulation, agricultural insurance, and government subsidy programs. The previous research on orchard frost disasters is mainly focused on early risk warning. Therefore, to effectively quantify orchard frost loss, this paper proposes a frost loss assessment model constructed using meteorological and remote sensing information and applies this model to the regional-scale assessment of orchard fruit loss after frost. As an example, this article examines a frost event that occurred during the apple flowering period in Luochuan County, Northwestern China, on 17 April 2020. A multivariable linear regression (MLR) model was constructed based on the orchard planting years, the number of flowering days, and the chill accumulation before frost, as well as the minimum temperature and daily temperature difference on the day of frost. Then, the model simulation accuracy was verified using the leave-one-out cross-validation (LOOCV) method, and the coefficient of determination (R2), the root mean square error (RMSE), and the normalized root mean square error (NRMSE) were 0.69, 18.76%, and 18.76%, respectively. Additionally, the extended Fourier amplitude sensitivity test (EFAST) method was used for the sensitivity analysis of the model parameters. The results show that the simulated apple orchard fruit number reduction ratio is highly sensitive to the minimum temperature on the day of frost, and the chill accumulation and planting years before the frost, with sensitivity values of ≥0.74, ≥0.25, and ≥0.15, respectively. This research can not only assist governments in optimizing traditional orchard frost prevention measures and market price regulation but can also provide a reference for agricultural insurance companies to formulate plans for compensation after frost.

scholarly journals Using Multi-Temporal MODIS NDVI Data to Monitor Tea Status and Forecast Yield: A Case Study at Tanuyen, Laichau, Vietnam

2020 ◽  
Vol 12 (11) ◽  
pp. 1814
Author(s):  
Phamchimai Phan ◽  
Nengcheng Chen ◽  
Lei Xu ◽  
Zeqiang Chen
Keyword(s):  
Remote Sensing ◽  
Root Mean Square Error ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Vegetation Index ◽  
Coefficient Of Determination ◽  
Percentage Error ◽  
Support Vector ◽  
Mean Square ◽  
Multi Temporal

Tea is a cash crop that improves the quality of life for people in the Tanuyen District of Laichau Province, Vietnam. Tea yield, however, has stagnated in recent years, due to changes in temperature, precipitation, the age of the tea bushes, and diseases. Developing an approach for monitoring tea bushes by remote sensing and Geographic Information Systems (GIS) might be a way to alleviate this problem. Using multi-temporal remote sensing data, the paper details an investigation of the changes in tea health and yield forecasting through the normalized difference vegetation index (NDVI). In this study, we used NDVI as a support tool to demonstrate the temporal and spatial changes in NDVI through the extract tea NDVI value and calculate the mean NDVI value. The results of the study showed that the minimum NDVI value was 0.42 during January 2013 and February 2015 and 2016. The maximum NDVI value was in August 2015 and June 2017. We indicate that the linear relationship between NDVI value and mean temperature was strong with R 2 = 0.79 Our results confirm that the combination of meteorological data and NDVI data can achieve a high performance of yield prediction. Three models to predict tea yield were conducted: support vector machine (SVM), random forest (RF), and the traditional linear regression model (TLRM). For period 2009 to 2018, the prediction tea yield by the RF model was the best with a R 2 = 0.73 , by SVM it was 0.66, and 0.57 with the TLRM. Three evaluation indicators were used to consider accuracy: the coefficient of determination ( R 2 ), root-mean-square error (RMSE), and percentage error of tea yield (PETY). The highest accuracy for the three models was in 2015 with a R 2 ≥ 0.87, RMSE < 50 kg/ha, and PETY less 3% error. In the other years, the prediction accuracy was higher in the SVM and RF models. Meanwhile, the RF algorithm was better than PETY (≤10%) and the root mean square error for this algorithm was significantly less (≤80 kg/ha). RMSE and PETY showed relatively good values in the TLRM model with a RMSE from 80 to 100 kg/ha and a PETY from 8 to 15%.

scholarly journals Low Cost Automatic Reconstruction of Tree Structure by AdQSM with Terrestrial Close-Range Photogrammetry

Forests ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1020
Author(s):  
Yanqi Dong ◽  
Guangpeng Fan ◽  
Zhiwu Zhou ◽  
Jincheng Liu ◽  
Yongguo Wang ◽  
...  
Keyword(s):  
Root Mean Square Error ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Low Cost ◽  
Reference Value ◽  
Tree Height ◽  
Point Clouds ◽  
Tree Structure ◽  
Mean Square ◽  
Tree Model

The quantitative structure model (QSM) contains the branch geometry and attributes of the tree. AdQSM is a new, accurate, and detailed tree QSM. In this paper, an automatic modeling method based on AdQSM is developed, and a low-cost technical scheme of tree structure modeling is provided, so that AdQSM can be freely used by more people. First, we used two digital cameras to collect two-dimensional (2D) photos of trees and generated three-dimensional (3D) point clouds of plot and segmented individual tree from the plot point clouds. Then a new QSM-AdQSM was used to construct tree model from point clouds of 44 trees. Finally, to verify the effectiveness of our method, the diameter at breast height (DBH), tree height, and trunk volume were derived from the reconstructed tree model. These parameters extracted from AdQSM were compared with the reference values from forest inventory. For the DBH, the relative bias (rBias), root mean square error (RMSE), and coefficient of variation of root mean square error (rRMSE) were 4.26%, 1.93 cm, and 6.60%. For the tree height, the rBias, RMSE, and rRMSE were—10.86%, 1.67 m, and 12.34%. The determination coefficient (R2) of DBH and tree height estimated by AdQSM and the reference value were 0.94 and 0.86. We used the trunk volume calculated by the allometric equation as a reference value to test the accuracy of AdQSM. The trunk volume was estimated based on AdQSM, and its bias was 0.07066 m3, rBias was 18.73%, RMSE was 0.12369 m3, rRMSE was 32.78%. To better evaluate the accuracy of QSM’s reconstruction of the trunk volume, we compared AdQSM and TreeQSM in the same dataset. The bias of the trunk volume estimated based on TreeQSM was −0.05071 m3, and the rBias was −13.44%, RMSE was 0.13267 m3, rRMSE was 35.16%. At 95% confidence interval level, the concordance correlation coefficient (CCC = 0.77) of the agreement between the estimated tree trunk volume of AdQSM and the reference value was greater than that of TreeQSM (CCC = 0.60). The significance of this research is as follows: (1) The automatic modeling method based on AdQSM is developed, which expands the application scope of AdQSM; (2) provide low-cost photogrammetric point cloud as the input data of AdQSM; (3) explore the potential of AdQSM to reconstruct forest terrestrial photogrammetric point clouds.

Comparison of Thresholding and Edge Detection Segmentation Techniques

2013 ◽  
Vol 860-863 ◽  
pp. 2783-2786
Author(s):  
Yu Bing Dong ◽  
Hai Yan Wang ◽  
Ming Jing Li
Keyword(s):  
Image Segmentation ◽  
Root Mean Square Error ◽  
Edge Detection ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Experimental Results ◽  
Mean Square ◽  
Segmentation Method ◽  
Segmentation Algorithms

Edge detection and thresholding segmentation algorithms are presented and tested with variety of grayscale images in different fields. In order to analyze and evaluate the quality of image segmentation, Root Mean Square Error is used. The smaller error value is, the better image segmentation effect is. The experimental results show that a segmentation method is not suitable for all images segmentation.

Quantitative Analysis of Forsythiae fructus by Near Infrared Spectroscopy

2013 ◽  
Vol 807-809 ◽  
pp. 1967-1971
Author(s):  
Yan Bai ◽  
Xiao Yan Duan ◽  
Hai Yan Gong ◽  
Cai Xia Xie ◽  
Zhi Hong Chen ◽  
...  
Keyword(s):  
Infrared Spectroscopy ◽  
Root Mean Square Error ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Near Infrared Spectroscopy ◽  
Near Infrared ◽  
Cross Validation ◽  
Ethanol Extract ◽  
Mean Square ◽  
Validation Set

In this paper, the content of forsythoside A and ethanol-extract were rapidly determinated by near-infrared reflectance spectroscopy (NIRS). 85 samples of Forsythiae Fructus harvested in Luoyang from July to September in 2012 were divided into a calibration set (75 samples) and a validation set (10 samples). In combination with the partical least square (PLS), the quantitative calibration models of forsythoside A and ethanol-extract were established. The correlation coefficient of cross-validation (R2) was 0.98247 and 0.97214 for forsythoside A and ethanol-extract, the root-mean-square error of calibration (RMSEC) was 0.184 and 0.570, the root-mean-square error of cross-validation (RMSECV) was 0.81736 and 0.36656. The validation set were used to evaluate the performance of the models, the root-mean-square error of prediction (RMSEP) was 0.221 and 0.518. The results indicated that it was feasible to determine the content of forsythoside A and ethanol-extract in Forsythiae Fructus by near-infrared spectroscopy.

Analysis of candlenut oil as oil adulterant in three functional oils of soybean oil, sunflower oil and grapeseed oil in quaternary mixture systems using FTIR spectroscopy and chemometrics

Food Research ◽  
2021 ◽  
Vol 5 (2) ◽  
pp. 248-253
Author(s):  
A.B. Riyanta ◽  
S. Riyanto ◽  
E. Lukitaningsih ◽  
A. Rohman
Keyword(s):  
Root Mean Square Error ◽  
Soybean Oil ◽  
Ftir Spectroscopy ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Sunflower Oil ◽  
Ftir Spectra ◽  
Mean Square ◽  
Grapeseed Oil ◽  
Quaternary Mixture

Soybean oil (SBO), sunflower oil (SFO) and grapeseed oil (GPO) contain high levels of unsaturated fats that are good for health and have proximity to candlenut oil. Candlenut oil (CNO) has a lower price and easier to get oil from that seeds than other seed oils, so it is used as adulteration for gains. Therefore, authentication is required to ensure the purity of oils by proper analysis. This research was aimed to highlight the FTIR spectroscopy application with multivariate calibration is a potential analysis for scanning the quaternary mixture of CNO, SBO, SFO and GPO. CNO quantification was performed using multivariate calibrations of principle component (PCR) regression and partial least (PLS) square to predict the model from the optimization FTIR spectra regions. The highest R2 and the lowest values of root mean square error of calibration (RMSEC) and root mean square error of prediction (RMSEP) were used as the basis for selection of multivariate calibrations created using several wavenumbers region of FTIR spectra. Wavenumbers regions of 4000-650 cm-1 from the second derivative FTIR-ATR spectra using PLS was used for quantitative analysis of CNO in quaternary mixture with SBO, SFO and GPO with R2 calibration = 0.9942 and 0.0239% for RMSEC value and 0.0495%. So, it can be concluded the use of FTIR spectra combination with PLS is accurate to detect quaternary mixtures of CNO, SBO, SFO and GPO with the highest R2 values and the lowest RMSEC and RMSEP values.

scholarly journals A useful quantitative model for determination of enantiomeric composition of racemate praziquantel by ultraviolet spectroscopy combined with partial least squares and its application to praziquantel tablets

2018 ◽  
Vol 11 (03) ◽  
pp. 1850011 ◽  
Author(s):  
Man Zhao ◽  
Ran Meng ◽  
Yifang Lu ◽  
Lingyun Hu ◽  
Na Sun ◽  
...  
Keyword(s):  
Root Mean Square Error ◽  
Least Squares ◽  
Partial Least Squares ◽  
Mean Square Error ◽  
Root Mean Square ◽  
Reference Value ◽  
Quantitative Model ◽  
Enantiomeric Composition ◽  
Mean Square ◽  
Validation Set

A simple and novel method has been proposed to determine the enantiomeric composition of racemate praziquantel (PZQ) by using the analysis of ultraviolet (UV) spectroscopy combined with partial least squares (PLS). This method does not rely on the use of expensive carbohydrates such as cyclodextrins, but on the use of inexpensive sucrose, which is equally effective as carbohydrate. PZQ has two enantiomers. Through measuring the slight difference in the UV spectral absorption of PZQ due to different interactions between its two enantiomers and sucrose, the enantiomeric composition was determined by a quantitative model based on PLS analysis. The model showed that the correlation coefficients of calibration set and validation set were 0.9971 and 0.9972, respectively. The root mean square error of calibration (RMSEC) and the root mean square error of prediction (RMSEP) were 0.0167 and 0.0129, respectively. Then, the independent data of PZQ tablets were also used to test how well the quantitative model of PLS predicted the enantiomeric composition. The ratio of S-PZQ in tablet was 0.492, determined by high-performance liquid chromatography as the reference value. Six solutions of the tablet samples were prepared, and the ratios of S-PZQ in tablet samples in the validation set were predicted by the PLS model. Their relative errors with the reference value were not more than 4%. Therefore, the established model could be accurate and employed to predict the enantiomeric compositions of PZQ tablets.

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