scholarly journals Autologous tumor‑derived microvesicles influence gene expression profiles and enhance protumorigenic chemotactic potential, signal transduction and cellular respiration in gastric cancer cells

Author(s):  
Rafal Szatanek ◽  
Kazimierz Weglarczyk ◽  
Malgorzata Stec ◽  
Jaroslaw Baran ◽  
Magdalena Parlinska‑Wojtan ◽  
...  
Oncogene ◽  
2002 ◽  
Vol 21 (42) ◽  
pp. 6549-6556 ◽  
Author(s):  
Jiafu Ji ◽  
Xin Chen ◽  
Suet Yi Leung ◽  
Jen-Tsan A Chi ◽  
Kent Man Chu ◽  
...  

2020 ◽  
Vol 21 (22) ◽  
pp. 8520
Author(s):  
Ling Qin ◽  
Erying Chen ◽  
Feifei Li ◽  
Xiao Yu ◽  
Zhenyu Liu ◽  
...  

Foxtail millet (Setaria italica (L.) P. Beauv) is an important food and forage crop because of its health benefits and adaptation to drought stress; however, reports of transcriptomic analysis of genes responding to re-watering after drought stress in foxtail millet are rare. The present study evaluated physiological parameters, such as proline content, p5cs enzyme activity, anti-oxidation enzyme activities, and investigated gene expression patterns using RNA sequencing of the drought-tolerant foxtail millet variety (Jigu 16) treated with drought stress and rehydration. The results indicated that drought stress-responsive genes were related to many multiple metabolic processes, such as photosynthesis, signal transduction, phenylpropanoid biosynthesis, starch and sucrose metabolism, and osmotic adjustment. Furthermore, the Δ1-pyrroline-5-carboxylate synthetase genes, SiP5CS1 and SiP5CS2, were remarkably upregulated in foxtail millet under drought stress conditions. Foxtail millet can also recover well on rehydration after drought stress through gene regulation. Our data demonstrate that recovery on rehydration primarily involves proline metabolism, sugar metabolism, hormone signal transduction, water transport, and detoxification, plus reversal of the expression direction of most drought-responsive genes. Our results provided a detailed description of the comparative transcriptome response of foxtail millet variety Jigu 16 under drought and rehydration environments. Furthermore, we identify SiP5CS2 as an important gene likely involved in the drought tolerance of foxtail millet.


2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Dominic A. Pearce ◽  
Laura M. Arthur ◽  
Arran K. Turnbull ◽  
Lorna Renshaw ◽  
Vicky S. Sabine ◽  
...  

2021 ◽  
Vol 41 (1) ◽  
Author(s):  
Xianxue Zhang ◽  
Feng Yang ◽  
Zhenbao Wang

Abstract Immunotherapy is remarkably affected by the immune environment of the principal tumor. Nonetheless, the immune environment’s clinical relevance in stage IV gastric cancer (GC) is largely unknown. The gene expression profiles of 403 stage IV GC patients in the three cohorts: GEO (Gene Expression Omnibus, GSE84437 (n=292) and GSE62254 (n=77), and TCGA (The Cancer Genome Atlas, n=34) were used in the present study. Using four publicly available stage IV GC expression datasets, 29 immune signatures were expression profiled, and on this basis, we classified stage IV GC. The classification was conducted using the hierarchical clustering method. Three stage IV GC subtypes L, M, and H were identified representing low, medium, and high immunity, respectively. Immune correlation analysis of these three types revealed that Immune H exhibited a better prognostic outcome as well as a higher immune score compared with other subtypes. There was a noticeable difference in the three subgroups of HLA genes. Further, on comparing with other subtypes, CD86, CD80, CD274, CTLA4, PDCD1, and PDCD1LG2 had higher expression in the Immunity H subtype. In stage IV GC, potentially positive associations between immune and pathway activities were displayed, due to the enrichment of pathways including TNF signaling, Th-17 cell differentiation, and JAK-STAT signaling pathways in Immunity H vs Immunity L subtypes. External cohorts from TCGA cohort ratified these results. The identification of stage IV GC subtypes has potential clinical implications in stage IV GC treatment.


2020 ◽  
Vol 10 (9) ◽  
pp. 1490-1497
Author(s):  
Diqun Liu ◽  
Wenbo Cao ◽  
Guangsheng Hu ◽  
Nannan Wang ◽  
Weiwei Zhou

The aim of this study was to use current genomics methodologies to screen for gastric cancer (GC)-related gene expression and to compare expression levels associated with GC and paracancerous tissues. These findings will be considered together with patient clinicopathological data with the goal of identifying new tumor markers and novel directions for diagnosis and treatment. GC-associated gene expression profiles were identified in the Gene Expression Omnibus (GEO) and The Cancer Genome Atlas (TCGA) databases; these resources facilitated identification of genes that were differentially expressed in GC and adjacent normal tissues. Genomics screening identified ∼49 genes that were expressed at comparatively high levels and 65 genes that were expressed at comparatively low levels in association with GC. Moreover, specimens from fifty-six patients diagnosed with GC who underwent gastrointestinal surgery between March 2017 to September 2018 were used to generate RNA that was evaluated by real-time fluorescence quantitative PCR in order to confirm differential expression of genes encoding orosomucoid 1 (ORM1), hepsin (HPN), uridine phosphorylase 1 (UPP1), and glycoprotein nonmetastatic melanoma protein B (GPNMB). The nucleic acid of these samples was extracted by nanometric magnetic bead method. Among our findings, GPNMB was expressed at relatively high levels in association GC, while both ORM1 and HPN are expressed at relatively low levels in these tissues and expression of UPP1 remained unchanged. Taken together, our findings suggest that genomics methodologies can be used to identify differentially expressed genes in a comparison of GC to adjacent paracancerous tissue. Our findings also suggest that the transmembrane glycoprotein GPNMB may play a role in promoting the incidence and development of GC.


2009 ◽  
Vol 31 (9) ◽  
pp. 1381-1388 ◽  
Author(s):  
Michael J. Korenberg ◽  
Bryan J. Dicken ◽  
Sambasivarao Damaraju ◽  
Kathryn Graham ◽  
Carol E. Cass

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