scholarly journals It takes two to tango – Phylogeography, taxonomy and hybridization in grass snakes and dice snakes (Serpentes: Natricidae: Natrix natrix, N. tessellata)

2021 ◽  
Vol 71 ◽  
pp. 813-834
Author(s):  
Marika Asztalos ◽  
Dinçer Ayaz ◽  
Yusuf Bayrakcı ◽  
Murat Afsar ◽  
Cemal Varol Tok ◽  
...  

Using two mitochondrial DNA fragments and 13 microsatellite loci, we examined the phylogeographic structure and taxonomy of two codistributed snake species (Natrix natrix, N. tessellata) in their eastern distribution area, with a focus on Turkey. We found evidence for frequent interspecific hybridization, previously thought to be extremely rare, and for backcrosses. This underscores that closely related sympatric species should be studied together because otherwise the signal of hybridization will be missed. Furthermore, the phylogeographic patterns of the two species show many parallels, suggestive of a shared biogeographic history. In general, the phylogeographies follow the paradigm of southern richness to northern purity, but the dice snake has some additional lineages in the south and east in regions where grass snakes do not occur. For both species, the Balkan Peninsula and the Caucasus region served as glacial refugia, with several mitochondrial lineages occurring in close proximity. Our results show that the mitochondrial divergences in both species match nuclear genomic differentiation. Yet, in the former glacial refugia of grass snakes there are fewer nuclear clusters than mitochondrial lineages, suggesting that Holocene range expansions transformed the glacial hotspots in melting pots where only the mitochondrial lineages persisted, bearing witness of former diversity. On the other hand, the deep mitochondrial divergences in N. tessellata across its entire range indicate that more than one species could be involved, even though lacking microsatellite data outside of Turkey prevent firm conclusions. On the contrary, our microsatellite and mitochondrial data corroborate that N. megalocephala is invalid and not differentiated from sympatric populations of N. natrix. For Cypriot grass snakes, our analyses yielded conflicting results. A critical assessment of the available evidence suggests that N. natrix is a genetically impoverished recent invader on Cyprus and taxonomically not distinct from a subspecies also occurring in western Anatolia and the southern Balkans. Based on combined mitochondrial and nuclear genomic evidence we propose that for grass snakes the following subspecies should be recognized in our study region: (1) Natrix natrix vulgaris Laurenti, 1768, southeastern Central Europe and northern Balkans; (2) Natrix natrix moreoticus (Bedriaga, 1882), southern Balkans, western Anatolia, and Cyprus; and (3) Natrix natrix scutata (Pallas, 1771), eastern Anatolia, Caucasus region, Iran, northeastern distribution range (from eastern Poland and Finland to Kazakhstan and the Lake Baikal region). Thus, Natrix natrix cypriaca (Hecht, 1930) becomes a junior synonym of N. n. moreoticus and Natrix natrix persa (Pallas, 1814) becomes a junior synonym of N. n. scutata. Due to insufficient material, we could not resolve the status of Natrix natrix syriaca (Hecht, 1930) from the Gulf of İskenderun, southeastern Turkey.

2020 ◽  
Vol 287 (1928) ◽  
pp. 20200468 ◽  
Author(s):  
Daniel E. Ruzzante ◽  
Annie P. Simons ◽  
Gregory R. McCracken ◽  
Evelyn Habit ◽  
Sandra J. Walde

The rise of the southern Andes and the Quaternary glacial cycles influenced the landscape of Patagonia, affecting the phylogeographic and biogeographic patterns of its flora and fauna. Here, we examine the phylogeography of the freshwater fish, Percichthys trucha, using 53 sequenced microsatellite DNA markers . Fish ( n = 835) were collected from 16 river systems (46 locations) spanning the species range on both sides of the Andes. Eleven watersheds drain to the Pacific, five of which are trans-Andean (headwaters east of Andes). The remaining five drainages empty into the Atlantic. Three analytical approaches (neighbour-joining tree, hierarchical AMOVAs, S tructure ) revealed evidence of historic drainage reversals: fish from four of the five trans-Andean systems (Puelo, Futalaufquen/Yelcho, Baker, Pascua) exhibited greater genetic similarity with Atlantic draining systems than with Pacific systems with headwaters west of Andes. Present-day drainage (Pacific versus Atlantic) explained only 5% of total genetic variance, while ancestral drainage explained nearly 27% of total variance. Thus, the phylogeographic structure of P. trucha is consistent with episodes of drainage reversal in multiple systems and suggests a major role for deglaciation in the genetic and indeed the geographical distribution of P. trucha in Patagonia. The study emphasizes the significant role of historical processes in the current pattern of genetic diversity and differentiation in a fish from a southern temperate region.


2020 ◽  
Author(s):  
André Luís de Gasper ◽  
Guilherme Salgado Grittz ◽  
Carlos Henrique Russi ◽  
Carlos Eduardo Schwartz ◽  
Arthur Vinicius Rodrigues

ABSTRACTTree ferns are common elements in the Atlantic Forest domain, sometimes reaching more than half of total dominance at forest sites. Just as most groups, climate change might impact the distribution and diversity of tree ferns. To investigate the extent of these impacts in the subtropical Atlantic Rainforest, we measured the changes in species distribution, α- and β-diversity between current climate and future climatic scenarios for 2050. Most tree ferns species tend to lose their distribution area. Hence, species richness tends to decrease in the future, especially in the Rainforest sites. In general, β-diversity tend to not change on the regional scale, but some sites can change its relative singularity in composition. Our results show that climate change can impact distribution and α-diversity of tree ferns, but with no trend to cause homogenization in the tree ferns of the study area. Protected Areas (PAs) in our study region manage to withhold more α-diversity than areas without PAs — the same applies to β-diversity. Our study offers a new light into the effects of climate change in tree ferns by integrating the evaluation of its impacts on distribution, α- and β-diversity in all study areas and inside PAs.


2019 ◽  
Author(s):  
Rodrigo Vega ◽  
Allan D. McDevitt ◽  
Joanna Stojak ◽  
Alina Mishta ◽  
Jan M. Wójcik ◽  
...  

ABSTRACTSouthern and northern glacial refugia are considered paradigms that explain the complex phylogeographic patterns and processes of European biota. Although the Eurasian pygmy shrew Sorex minutus Linnaeus, 1766 (Eulipotyphla, Soricidae) has been used a model species to study geographic isolation and genetic diversification in Mediterranean peninsulas in the Last Glacial Maximum (LGM), and post-glacial population expansion from cryptic northern glacial refugia in Western and Central Europe, there has been incomplete knowledge about the phylogeographic structure, genetic differentiation and demographic history within these regions. Here, we provide a revisited statistical phylogeographic study of S. minutus with greater sampling coverage in terms of numbers of individuals and geographic range, making it the most comprehensive investigation of this species to date. The results showed support for genetically distinct and diverse phylogeographic groups consistent with southern and northern glacial refugia, as expected from previous studies, but also identified geographical barriers concordant with glaciated mountain ranges during the LGM, early diversification events dated between the Upper Pleistocene and Lower Holocene for the main phylogeographic groups, and recent (post-LGM) patterns of demographic expansions. The results have implications for the conservation of intraspecific diversity and the preservation of the evolutionary potential of S. minutus.


2022 ◽  
Author(s):  
Jorge Gutiérrez-Rodríguez ◽  
Alejandro Zaldívar-Riverón ◽  
David B. Weissman ◽  
Amy G. Vandergast

The Jerusalem cricket subfamily Stenopelmatinae is distributed from south-western Canada through the western half of the United States to as far south as Ecuador. Recently, the generic classification of this subfamily was updated to contain two genera, the western North American Ammopelmatus, and the Mexican, and central and northern South American Stenopelmatus. The taxonomy of the latter genus was also revised, with 5, 13 and 14 species being respectively validated, declared as nomen dubium and described as new. Despite this effort, the systematics of Stenopelmatus is still far from complete. Here, we generated sequences of the mitochondrial DNA barcoding locus and performed two distinct DNA sequence-based approaches to assess the species’ limits among several populations of Stenopelmatus, with emphasis on populations from central and south-east Mexico. We reconstructed the phylogenetic relationships among representative species of the main clades within the genus using nuclear 3RAD data and carried out a molecular clock analysis to investigate its biogeographic history. The two DNA sequence-based approaches consistently recovered 34 putative species, several of which are apparently undescribed. Our estimates of phylogeny confirmed the recent generic update of Stenopelmatinae and revealed a marked phylogeographic structure within Stenopelmatus. Based on our results, we propose the existence of four species-groups within the genus (the faulkneri, talpa, Central America and piceiventris species-groups). The geographic distribution of these species-groups and our molecular clock estimates are congruent with the geological processes that took place in mountain ranges along central and southern Mexico, particularly since the Neogene. Our study emphasises the necessity to continue performing more taxonomic and phylogenetic studies on Stenopelmatus to clarify its actual species richness and evolutionary history in Mesoamerica.


Zootaxa ◽  
2021 ◽  
Vol 4999 (4) ◽  
pp. 389-396
Author(s):  
ESRA BAYÇELEBİ ◽  
DAVUT TURAN ◽  
CÜNEYT KAYA ◽  
JÖRG FREYHOF

Alburnus battalgilae Özuluğ & Freyhof, 2007 from the Gediz River drainage in western Anatolia is a junior synonym of A. attalus Özuluğ & Freyhof, 2007, from the adjacent Bakır River drainage. We were unable to confirm the morphological differences originally proposed. As both species have been described in the same publication, as First Reviewers, we prioritise of A. attalus over A. battalgilae.


2012 ◽  
Vol 60 (1) ◽  
pp. 20 ◽  
Author(s):  
S. M. Ma ◽  
M. L. Zhang ◽  
S. C. Sanderson

We investigated the phylogeography of Gymnocarpos przewalskii Maxim. (Caryophyllaceae), a rare relictual shrub restricted to north-western China, in the context of Quaternary climate oscillations. Three cpDNA regions (psbA–trnH, ycf6–psbM and rpl32–trnL (UAG)) were sequenced for 160 individuals from 16 populations. High genetic diversity (hT = 0.930, hS = 0.425) and a significant phylogeographic structure (NST > GST, P < 0.01) were identified; 31 different cpDNA haplotypes were detected. Phylogenetic analyses showed that the haplotypes were clustered into five clades, consistent with their distributions in the following four geographic regions: the Tarim Basin, Hami Basin, the western Yumen of Gansu Province and an easternmost region, consisting of populations in the Wulate Rear Banner region in Inner Mongolia, the Jinta and Jingyuan regions in Gansu Province and the Zhongwei region in Ningxia. The existence of regional divergence was supported by AMOVA, which revealed that ~63% of variation was due to differences among the four geographic regions. Four independent glacial refugia were inferred, in the western Tarim Basin, Hami Basin, the Liuyuan region in western Gansu and the easternmost region mentioned. Population bottlenecks and postglacial recolonisation were identified in the northern Tarim Basin, western Yumen and the Jinta region in Gansu Province.


Forests ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 511
Author(s):  
Le T. Ho ◽  
Jana Hoppe ◽  
Frank M. Thomas

Using a dendrochronological approach, we determined the resistance, recovery and resilience of the radial stem increment towards episodes of growth decline, and the accompanying variation of 13C discrimination against atmospheric CO2 (Δ13C) in tree rings of two palaeotropical pine species. These species co-occur in the mountain ranges of south–central Vietnam (1500–1600 m a.s.l.), but differ largely in their areas of distribution (Pinus kesiya from northeast India to the Philippines; P. dalatensis only in south and central Vietnam and in some isolated populations in Laos). For P. dalatensis, a robust growth chronology covering the past 290 years could be set up for the first time in the study region. For P. kesiya, the 140-year chronology constructed was the longest that could be established to date in that region for this species. In the first 40 years of the trees’ lives, the stem diameter increment was significantly larger in P. kesiya, but levelled off and even decreased after 100 years, whereas P. dalatensis exhibited a continuous growth up to an age of almost 300 years. Tree-ring growth of P. kesiya was negatively related to temperature in the wet months and season of the current year and in October (humid transition period) of the preceding year and to precipitation in August (monsoon season), but positively to precipitation in December (dry season) of the current year. The P. dalatensis chronologies exhibited no significant correlation with temperature or precipitation. Negative correlations between BAI and Δ13C indicate a lack of growth impairment by drought in both species. Regression analyses revealed a lower resilience of P. dalatensis upon episodes of growth decline compared to P. kesiya, but, contrary to our hypothesis, mean values of the three sensitivity parameters did not differ significantly between these species. Nevertheless, the vigorous growth of P. kesiya, which does not fall behind that of P. dalatensis even at the margin of its distribution area under below-optimum edaphic conditions, is indicative of a relatively high plasticity of this species towards environmental factors compared to P. dalatensis, which, in tendency, is less resilient upon environmental stress even in the “core” region of its occurrence.


Zootaxa ◽  
2021 ◽  
Vol 4964 (2) ◽  
pp. 382-384
Author(s):  
PETER HLAVÁČ ◽  
HEINRICH MEYBOHM

The subgenus Tetramelus Motschulsky, 1869 with its currently 109 palaearctic species, is the largest Palaearctic subgenus of the largest world scydmaenine genus Euconnus Thomson, 1859. The nomenclatural validity of the subgenus-name has been recently supported by a detailed morphological study (Jałoszyński 2015). Euconnus (Tetramelus) kraussi was described by Edmund Reitter (1881a), with the type locality indicated as Caucasus, Martkopi. This was the second species of the subgenus Tetramelus known to occur in the entire Caucasus region, after Euconnus (Tetramelus) reitteri Saulcy, 1878, the latter with unknown type locality. The former was treated as a junior synonym of the latter by Croissandeau (1898), and as a subspecies by Karaman (1973). A modern redescription and illustration of the aedeagus was given by Vít & Hlaváč (1998), together with a key to all species of Tetramelus known at that time from the Caucasus. Castellini (2006: 102) placed Euconnus (Tetramelus) kraussi as a junior synonym of Euconnus (Tetramelus) reitteri. This taxonomic act was based just on the similarity of aedeagi of these two taxa illustrated by Vít & Hlaváč (1998). No type material was studied. Euconnus (Tetramelus) reitteri is smaller, only 1.25-1.30 mm long, against 1.40-1.60 mm for Euconnus (Tetramelus) kraussi. To combine this with differences on the aedeagus and with the allopatric distribution, we regard these two forms as two different species. Later, two new species were described, Euconnus (Tetramelus) marinae Franz, 1979, the type locality „Kachetien nächst Shuamta“ and Euconnus (Tetramelus) nachuzrischwilii Franz, 1986, the type locality „nördlich von Anamuri in etwa 1000 m“. Both were included in the key of Vít & Hlaváč (1998). The type material of both these species was found well-preserved in the Natural History Museum in Vienna (NMW), and thanks to Dr. Harald Schillhammer it was available to the senior author for study. A detailed study of this material proved that both species were conspecific with Euconnus (Tetramelus) kraussi, and their synonymy is formally established here. We are also providing new records for this species, which is so far endemic to eastern Georgia, well delimited by the Meskheti-Likhi range. The material treated in this study is deposited in the following collections: MNHN – Muséum National d‘Histoire Naturelle, Paris, France; NMW – Naturhistorisches Museum Wien, Vienna, Austria; PCAP – private collection of Andreas Pütz, Eisenhüttenstadt, Germany; PCHM – private collection of Heinrich Meybohm, Großhansdorf, Germany; PCMS – private collection of Michael Schülke, Berlin, Germany; PCPH – private collection of Peter Hlaváč, Prague, Czech Republic. The distributional map was created using Encarta software. 


2009 ◽  
Vol 39 (2) ◽  
pp. 286-307 ◽  
Author(s):  
Juan P. Jaramillo-Correa ◽  
Jean Beaulieu ◽  
Damase P. Khasa ◽  
Jean Bousquet

The study of past historical events that have led to ecological changes is a recurrent topic in many disciplines. Given that many of these events have left a large and long-lasting evolutionary imprint on the extant population genetic structure of species, phylogeographic studies on modern taxa have been largely used to infer the impacts of these events and to complement previous paleoecological and paleobotanical surveys. In spite of the geographical and geological complexity of North America, converging patterns can be observed when comparing the available genetic data for forest trees. Such patterns include the co-location of genetic discontinuities among species and their coincidence with mountain ranges (e.g., the Appalachians, the Rocky Mountains, the Sierra Nevada, or the Transverse Volcanic Belt) and with previously inferred glacial refugia. Using examples drawn from the available literature, we illustrate such shared features and present the contrasting phylogeographic patterns observed among the different regions of the continent. The various evolutionary consequences of historical events that can be deduced from these phylogeographic studies (e.g., past bottlenecks, founder effects, allopatric divergence, or introgressive hybridization) are additionally discussed. The present challenges and future research prospects that are likely to further advance this field are finally outlined.


Forests ◽  
2020 ◽  
Vol 11 (10) ◽  
pp. 1118
Author(s):  
Claudia Mattioni ◽  
Liliana Ranzino ◽  
Marcello Cherubini ◽  
Luca Leonardi ◽  
Tommaso La Mantia ◽  
...  

Large old trees are extraordinary organisms. They not only represent a historical, landscape and environmental heritage of inestimable value, but they also witness a long history of environmental changes and human interventions, and constitute an as yet poorly known reserve of genetic variability which can be considered a great resource for management programs of forest species. This is the first genetic study on Italian, large, old chestnut trees (Castanea sativa Mill.). Ninety-nine trees were surveyed and analysed. For each tree, more than one sample from canopy and root suckers was collected to test for the genetic integrity of the individuals. All samples were genotyped using nine nuclear microsatellite markers (nSSRs) and 106 unique genetic profiles were identified. A Bayesian analysis performed with the software STRUCTURE revealed the occurrence of two main gene pools and unveiled the genetic relationships existing among the genotyped individuals, and with the natural chestnut populations living in proximity. A phylogeographic structure of the plastid diversity was also obtained by the use of DNA sequence variation at two marker regions, revealing different origins and probable connections of the old trees with different glacial refugia. Our results contribute to an improved evaluation of the European chestnut genetic resources and provide useful insights into the species’ history and domestication in Italy. The importance of carefully targeted conservation strategies for these invaluable organisms is reaffirmed.


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