13C CP/MAS NMR Spectroscopic Characterization of Native Silk Fibers

2011 ◽  
Vol 175-176 ◽  
pp. 328-332 ◽  
Author(s):  
Wei Zhang ◽  
Jian Xin He ◽  
Yan Wang

Differences in secondary structure among Bombyx mori (B. mori) silk and two wild silks of Antheraea yamamai (A. yamamai) and Antheraea pernyi (A. pernyi) were investigated by CP/MAS 13C NMR Spectroscopy. The β-sheet structure was primary in three silk, and B. mori silk had the highest β-sheet structure. Although amino acid compositions are very similar for two wild silk, their secondary structures had significant difference. A. yamamai silk contained more α-helix structure, whereas more β-turn and random coil structures formed in A. pernyi silk. B. mori silk was mainly composed of anti-parallel β-sheet structure, however, the parallel β-sheet structure was advantage in the two wild silks, and A. yamamai silk contained more anti-parallel β-sheet conformation than A. pernyi silk.

2011 ◽  
Vol 236-238 ◽  
pp. 2221-2224
Author(s):  
Kui Hua Zhang ◽  
Xiu Mei Mo

In order to improve water-resistant ability silk fibroin (SF) and SF/P(LLA-CL) blended nanofibrous scaffolds for tissue engineering applications, methanol vapor were used to treat electrospun nanofibers. SEM indicated SF and SF/ P(LLA-CL) scaffolds maintained nanofibrous structure after treated with methanol vapor and possessed good water-resistant ability. Characterization of 13C NMR clarified methanol vapor induced SF conformation from random coil or α- helix to β-sheet. Moreover, treated SF/ P (LLA-CL) nanofibrous scaffolds still kept good mechanical properties. Methanol vapor could be ideal method to treat SF and SF/ P(LLA-CL) nanofibrous scaffolds for biomedical applications.


2005 ◽  
Vol 187 (14) ◽  
pp. 5008-5012 ◽  
Author(s):  
Katherine M. Hoffmann ◽  
Daniel Williams ◽  
William M. Shafer ◽  
Richard G. Brennan

ABSTRACT MtrR represses expression of the Neisseria gonorrhoeae mtrCDE multidrug efflux transporter genes. MtrR displays salt-dependent DNA binding, a stoichiometry of two dimers per DNA site, and, for a protein that was expected to be essentially all helical, a high percentage of random coil and possibly β-sheet structure.


1994 ◽  
Vol 343 (1306) ◽  
pp. 435-441 ◽  

Although no chemical modifications have been found to distinguish the cellular prion protein PrP c from its infectious analogue PrP Sc , spectroscopic methods such as Fourier transform infrared (ftir) spectroscopy reveal a major conformational difference. PrP c is rich in a-helix but is devoid of β-sheet,whereas PrP Sc is high in β-sheet. N-terminal truncation of PrP Sc by limited proteolysis does not destroy infectivity but it increases the β-sheet content and shifts the ftir absorption to lower frequencies, typical of the cross β-pleated sheets of amyloids. Thus the formation of PrP Sc from PrP c involves a conformational transition in which one or more x-helical regions of the protein is converted to β-sheet. This transition is mimicked by synthetic peptides, allowing predictions of domains of PrP involved in prion diseases.


2011 ◽  
Vol 175-176 ◽  
pp. 132-136 ◽  
Author(s):  
Ming Xia Gou ◽  
Xu Hong Yang

The method of extracting protein from wool was studied for the purpose of reusing the waste wool. The aqueous solution of wool keratin was prepared with Sodium Shlfide as reductive agent. In this paper, PVA was used to mix with keratin in different proportions. Both solutions were cast to obtain blended films. Scanning electron microscopy investigation showed that the surface of blended films was rough and uneven and the surface of the pure keratin film had small peridiole. FTIR analysis indicated that the secondary structure of the keratin was influenced by the blending ratios. Compared with wool fiber, the keratin film cast from aqueous solution showed a decrease in the amount of α-helix structure, while β-sheet and random coil conformations increased. When the keratin solution and PVA solution were blended in the ratios of 40:60, the film was flexible and rigid, and had good mechanical properties. This study encourages the further investigation of the applications of wool keratin films in the biomedical field, which could provide a new way to reuse various waste feathers.


2013 ◽  
Vol 807-809 ◽  
pp. 2031-2034
Author(s):  
Yu Mei Li ◽  
Qiang Li ◽  
Sheng Han ◽  
Dong Xue Song ◽  
Yan Hong Qu ◽  
...  

A β-(1,3)-D-glucan (curdlan) synthase gene for a low molecular weight curdlan biosynthesis, crdSAg, from Agrobacterium sp. M503 was cloned and its encoding protein was characterized by several online protein analysis softwares. The crdSAg consists of 1965-base-pairs Open Reading Frame (ORF) encoding a protein with molecular weight approximate 73.5 kDa, which contains the conserved domain of CESA-CelA_like belonging to glycosyltransferase family 2 (GT2). Moreover, CrdSAg was a membrane protein with seven hydrophobic transmembrance domains. The second structure analysis indicated it was composed of 43.12% α-helix, 17.89% β-sheet, and 38.99% random coil structure. These data will lay a foundation to clarify the biosynthesis mechanism of the low molecular weight curdlan.


2006 ◽  
Vol 17 (02) ◽  
pp. 235-246 ◽  
Author(s):  
GÖKHAN GÖKOĞLU ◽  
TARIK ÇELİK

In order to provide insights into the misfolding mechanism and the subsequent aggregate formation which cause what are known as the neurodegenerative polyglutamine diseases, we have simulated a 10-residue polyglutamine (poly-Q) chain in vacuum and in solvent by multicanonical method, which enabled us to study the system in a wide temperature range and discuss thermodynamic properties. It is understood that the system in vacuum shows two phase transitions, first of them occur at high temperature that is the well-known helix-coil transition and the second one is a solid-solid transition. However, the poly-Q chain in solvent is in a random coil state at higher temperatures, goes through a conformational change at T = 200 K and assumes predominantly a mixture of anti-parallel β-sheet and α-helix structures at low temperatures. One-residue glutamine dipeptide is also simulated and low-energy stable conformations are identified.


1982 ◽  
Vol 28 (7) ◽  
pp. 795-808
Author(s):  
K. B. Easterbrook ◽  
R. W. Coombs

The tubular appendage, spina (Easterbrook and Coombs. 1976. Can. J. Microbiol. 22: 438–440), dissociates most efficiently under conditions of low ionic strength (0.01 M), high pH (10), and high temperature (95 °C). The protomer, spinin, thus produced is stable under these conditions and reassociates on cooling to give two distinct filamentous polymeric structures that differ in their stability, protein conformation, and reassociation characteristics. Under conditions of low ionic strength (0.01 M), reassociation is relatively slow and leads to a product that has significant amounts of α-helix in addition to the high β-sheet component; under conditions of high ionic strength (1 M), reassociation is rapid and the non-β-sheet component is in the random coil configuration. Since polymerization of the latter structure is "seeded" by either endogenous or exogenously supplied spina fragments, the protomers comprising it are assumed to be in the same conformation as in the spinae. High ionic strength induces folding of the protomer, multimeric association, and finally, elongation by a temperature-dependent process. Reassociation appears to be pH (6–10) independent and, apart from a possible minor calcium effect, cation nonspecific.


2019 ◽  
Vol 20 (12) ◽  
pp. 3078 ◽  
Author(s):  
Sara Signorelli ◽  
Salvatore Cannistraro ◽  
Anna Rita Bizzarri

Raman spectroscopy, which is a suitable tool to elucidate the structural properties of intrinsically disordered proteins, was applied to investigate the changes in both the structure and the conformational heterogeneity of the DNA-binding domain (DBD) belonging to the intrinsically disordered protein p53 upon its binding to Azurin, an electron-transfer anticancer protein from Pseudomonas aeruginosa. The Raman spectra of the DBD and Azurin, isolated in solution or forming a complex, were analyzed by a combined analysis based on peak inspection, band convolution, and principal component analysis (PCA). In particular, our attention was focused on the Raman peaks of Tyrosine and Tryptophan residues, which are diagnostic markers of protein side chain environment, and on the Amide I band, of which the deconvolution allows us to extract information about α-helix, β-sheet, and random coil contents. The results show an increase of the secondary structure content of DBD concomitantly with a decrease of its conformational heterogeneity upon its binding to Azurin. These findings suggest an Azurin-induced conformational change of DBD structure with possible implications for p53 functionality.


Author(s):  
Yoshihiro Taniguchi ◽  
Naohiro Takeda

Infrared spectra of five globular proteins (bovine pancreas ribonuclease A, horse skeletal muscle myoglobin, bovine pancreas insulin, horse heart cytochrome c, egg white lysozyme) in 5% D2O solutions (pD 7.0) were measured as a function of pressure up to 1470 MPa at 30 °C. According to the second-derivative spectral changes in the observed amide I band of the proteins, which indicate that the α-helix and β-sheet substructures of the secondary structures break dramatically into the random coil conformation, ribonuclease A and myoglobin are denatured reversibly at 850 MPa and 350 MPa, respectively. Lysozyme denatures partially and reversibly at 670 MPa, as shown by decrease in the α-helix and β-turn substructures, but no change occurs in the random coil and β-sheet substructures. The secondary structure of cytochrome c is not disrupted at pressures up to 1470 MPa, and partial transformation of the α-helix of insulin to random coil starts at 960 MPa. Hydrogen-deuterium exchange of protons on the amide groups in the protein interior is increased by external pressure and is associated with the pressure-induced protein conformational changes. A number of studies on the effects of pressure on protein denaturation have been carried out using various high-pressure detection methods: ultraviolet absorbance spectroscopy (Brandts et al., 1970; Hawley, 1971), visible absorbance spectroscopy (Zipp & Kauzmann, 1973), fluorescence intensity spectroscopy (Li et al., 1976), polarization fluorescence spectroscopy (Chryssomallis et al., 1981), and enzyme activity assays (Taniguchi & Suzuki, 1983; Makimoto et al., 1989). These techniques have the great advantage of being applicable to pressure-induced reversible denaturation of proteins to identify the thermodynamic parameters, especially the volume change and compressibility of a protein in solution, because the experiments can be run under dilute conditions at a protein concentration of less than 0.05% w/v. Therefore, these data reflect the intramolecular phenomena of reversible pressure changes and provide the volume changes accompanying the denaturation of proteins, which are due to the difference in partial molal (specific) volume between the native and denatured proteins in solution.


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