Use of leaf hyperspectral data and different regression models to estimate photosynthetic parameters (Vcmax and Jmax) in three different row crops

2020 ◽  
Author(s):  
Maria Luisa Buchaillot ◽  
David Soba ◽  
Tianchu Shu ◽  
Liu Juan ◽  
José Luis Araus ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Maximum Rate ◽  
Regression Models ◽  
Vegetation Index ◽  
Phenotypic Variability ◽  
Vegetation Indices ◽  
Hyperspectral Data ◽  
Spatial And Temporal Variation ◽  
Photosynthetic Parameters ◽  
Row Crops

<p>By 2050 future global food demand is projected to require a doubling of agricultural output, and climate change will exacerbate this challenge by intensifying the exposure of field crops to abiotic stress conditions, including rising temperature, increased drought, and increased CO<sub>2</sub> concentration ([CO<sub>2</sub>]). One of the keys to improving crop yield under different stresses is studying is photosynthesis. Photosynthetic parameters, such as the maximum rate of carboxylation of RuBP (V<sub>c,max</sub>), and the maximum rate of electron transport driving RuBP regeneration (J<sub>max</sub>) vary in response to climate conditions and have been identified as a target for improvement. However, the techniques used to measure these physiological parameters are very time consuming, ranging from 30 to 70 min per measurement and require specialized personnel. Therefore, breeding or genetic mapping for these traits under these conditions is prohibitively time-consuming. Spatial and temporal variation in plant photosynthesis can be estimated using remote sensing-derived spectral vegetation indices. Spectral estimates of green vegetation biomass and vigor, including vegetation indices such as the Normalized Difference Vegetation Index (NDVI), are widely used to estimate vegetation productivity across spatial and temporal scales but are unable to provide assessments of specific photosynthetic parameters. For that reason, hyperspectral remote sensing shows promise for predicting photosynthetic capacity based on more detailed leaf optical properties. In this study, we developed and assessed estimates of Vcmax and Jmax through four different advanced regression models: PLS, BR, ARDR, and LASSO based on leaf reflectance metrics measured with an ASD FieldSpec4 Hi-RES of different crops under different environmental conditions such as (1) different varieties of soybean under high [CO<sub>2</sub>] and high temperature, (2) different varieties of peanut under drought stress and (3) 20 varieties of cotton diverse origin and grown under field conditions. Both phenotypic variability and varying levels of stress were employed with each crop to ensure adequate ranges of responses. Model sensitivities were assessed for each crop and treatment separately and in combination in order to better understand the strengths and weaknesses of each model in all the different conditions. For the combination of three species, all the models suggest a robust prediction of Vcmax around R<sup>2</sup>:0.67 and the same for the Jmax R<sup>2</sup>: 0.55.</p>

scholarly journals Tracing Leaf Photosynthetic Parameters Using Hyperspectral Indices in an Alpine Deciduous Forest

2020 ◽  
Vol 12 (7) ◽  
pp. 1124
Author(s):  
Jia Jin ◽  
Bayu Arief Pratama ◽  
Quan Wang
Keyword(s):  
Maximum Rate ◽  
Deciduous Forest ◽  
Vegetation Indices ◽  
Specific Area ◽  
Information Criterion ◽  
Short Wave ◽  
Hyperspectral Data ◽  
Photosynthetic Parameters ◽  
Leaf Sample ◽  
First Order

Leaf photosynthetic parameters are important in understanding the role of photosynthesis in the carbon cycle. Conventional approaches to obtain information on the parameters usually involve long-term field work, even for one leaf sample, and are, thus, only applicable to a small area. The utilization of hyperspectral remote sensing especially of various vegetation indices is a promising approach that has been attracting increasing attention recently. However, most hyperspectral indices are only applicable to a specific area and specific forest stands, depending heavily on the conditions from which the indices are developed. In this study, we tried to develop new hyperspectral indices for tracing the two critical photosynthetic parameters (the maximum rate of carboxylation, Vcmax and the maximum rate of electron transport, Jmax) that are at least generally applicable for alpine deciduous forests, based on original hyperspectral reflectance, first-order derivatives, and apparent absorption spectra. In total, ten types of hyperspectral indices were screened to identify the best indices, and their robustness was determined using the ratio of performance to deviation (RPD) and Akaike’s Information Criterion corrected (AICc). The result revealed that the double differences (DDn) type of indices using the short-wave infrared (SWIR) region based on the first-order derivatives spectra performed best among all indices. The specific DDn type of indices obtained the RPD values of 1.43 (R2 = 0.51) for Vcmax and 1.68 (R2 = 0.64) for Jmax, respectively. These indices have also been tested using the downscaled dataset to examine the possibilities of using hyperspectral data derived from satellite-based information. These findings highlight the possibilities of tracing photosynthetic capacity using hyperspectral indices.

scholarly journals Spatial and temporal variation of vegetation cover in Al- Soudah area and its relationship to precipitation during the period (2014- 2018 AD) using remote sensing and geographic information systems: التباين المكاني والزمني للغطاء النباتي بمنطقة السودة وعلاقته بالتساقط خلال الفترة (2014- 2018م) باستخدام الاستشعار عن بعد ونظم المعلومات الجغرافية

2021 ◽  
Vol 5 (3) ◽  
pp. 107-87
Author(s):  
Fadi Abdullah alanazi, Yaser Rashed Alzannan, Faten Hamed Na Fadi Abdullah alanazi, Yaser Rashed Alzannan, Faten Hamed Na
Keyword(s):  
Remote Sensing ◽  
Information Systems ◽  
Geographic Information Systems ◽  
Vegetation Cover ◽  
Vegetation Index ◽  
Geographic Information ◽  
Temporal Changes ◽  
Spatial And Temporal Variation ◽  
Spatial And Temporal Changes ◽  
Modified Soil

Souda is one of the important regions in Saudi Arabia in terms of spatial and temporal changes in vegetation cover; It includes the National Park, which is a leading tourist destination and one of the most beautiful parks in it. by tracking the spatial and temporal changes of vegetation cover by integrating remote sensing and geographic information systems, through the application of the modified soil vegetation index MSAVI during the period (2014- 2018), it became clear the decrease in the quantity and density of vegetation cover in the area. Thus, the study concluded that this indicator is one of the best indicators that can be used to extract vegetation cover from satellite images.

Assessment of the State of the Territories of Closed Waste Disposal Facilities by Vegetation Indices

2021 ◽  
Vol 25 (9) ◽  
pp. 30-37
Author(s):  
N.N. Sliusar ◽  
A.P. Belousova ◽  
G.M. Batrakova ◽  
R.D. Garifzyanov ◽  
M. Huber-Humer ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Waste Disposal ◽  
Vegetation Cover ◽  
Vegetation Index ◽  
Vegetation Indices ◽  
Cost Effective ◽  
Google Earth ◽  
The State ◽  
Landsat 8 ◽  
The Earth

The possibilities of using remote sensing of the Earth data to assess the formation of phytocenoses at reclaimed dumps and landfills are presented. The objects of study are landfills and dumps in the Perm Territory, which differed from each other in the types and timing of reclamation work. The state of the vegetation cover on the reclaimed and self-overgrowing objects was compared with the reference plots with naturally formed herbage of zonal meadow vegetation. The process of reclamation of the territory of closed landfills was assessed by the presence and homogeneity of the vegetation layer and by the values of the vegetation index NDVI. To identify the dynamics of changes in the vegetation cover, we used multi-temporal satellite images from the open resources of Google Earth and images in the visible and infrared ranges of the Landsat-5/TM and Landsat-8/OLI satellites. It is shown that the data of remote sensing of the Earth, in particular the analysis of vegetation indices, can be used to assess the dynamics of overgrowing of territories of reclaimed waste disposal facilities, as well as an additional and cost-effective method for monitoring the restoration of previously disturbed territories.

scholarly journals Can We Detect the Brownness or Greenness of the Congo Rainforest Using Satellite-Derived Surface Albedo? A Study on the Role of Aerosol Uncertainties

2019 ◽  
Vol 11 (5) ◽  
pp. 1410 ◽  
Author(s):  
Suman Moparthy ◽  
Dominique Carrer ◽  
Xavier Ceamanos
Keyword(s):  
Remote Sensing ◽  
Surface Albedo ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Satellite Observations ◽  
Atmospheric Effects ◽  
Forest Regions ◽  
Aerosol Emissions

The ability of spatial remote sensing in the visible domain to properly detect the slow transitions in the Earth’s vegetation is often a subject of debate. The reason behind this is that the satellite products often used to calculate vegetation indices such as surface albedo or reflectance, are not always correctly decontaminated from atmospheric effects. In view of the observed decline in vegetation over the Congo during the last decade, this study investigates how effectively satellite-derived variables can contribute to the answering of this question. In this study, we use two satellite-derived surface albedo products, three satellite-derived aerosol optical depth (AOD) products, two model-derived AOD products, and synthetic observations from radiative transfer simulations. The study discusses the important discrepancies (of up to 70%) found between these satellite surface albedo products in the visible domain over this region. We conclude therefore that the analysis of trends in vegetation properties based on satellite observations in the visible domain such as NDVI (normalized difference vegetation index), calculated from reflectance or albedo variables, is still quite questionable over tropical forest regions such as the Congo. Moreover, this study demonstrates that there is a significant increase (of up to 14%) in total aerosols within the last decade over the Congo. We note that if these changes in aerosol loads are not correctly taken into account in the retrieval of surface albedo, a greenness change of the surface properties (decrease of visible albedo) of around 8% could be artificially detected. Finally, the study also shows that neglecting strong aerosol emissions due to volcano eruptions could lead to an artificial increase of greenness over the Congo of more than 25% in the year of the eruptions and up to 16% during the 2–3 years that follow.

scholarly journals Remote sensing of LAI, chlorophyll and leaf nitrogen pools of crop- and grasslands in five European landscapes

2013 ◽  
Vol 10 (10) ◽  
pp. 6279-6307 ◽  
Author(s):  
E. Boegh ◽  
R. Houborg ◽  
J. Bienkowski ◽  
C. F. Braban ◽  
T. Dalgaard ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Field Data ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Field Measurements ◽  
Leaf Nitrogen ◽  
Agricultural Landscapes ◽  
Nitrogen Pools ◽  
Spectral Vegetation Indices

Abstract. Leaf nitrogen and leaf surface area influence the exchange of gases between terrestrial ecosystems and the atmosphere, and play a significant role in the global cycles of carbon, nitrogen and water. The purpose of this study is to use field-based and satellite remote-sensing-based methods to assess leaf nitrogen pools in five diverse European agricultural landscapes located in Denmark, Scotland (United Kingdom), Poland, the Netherlands and Italy. REGFLEC (REGularized canopy reFLECtance) is an advanced image-based inverse canopy radiative transfer modelling system which has shown proficiency for regional mapping of leaf area index (LAI) and leaf chlorophyll (CHLl) using remote sensing data. In this study, high spatial resolution (10–20 m) remote sensing images acquired from the multispectral sensors aboard the SPOT (Satellite For Observation of Earth) satellites were used to assess the capability of REGFLEC for mapping spatial variations in LAI, CHLland the relation to leaf nitrogen (Nl) data in five diverse European agricultural landscapes. REGFLEC is based on physical laws and includes an automatic model parameterization scheme which makes the tool independent of field data for model calibration. In this study, REGFLEC performance was evaluated using LAI measurements and non-destructive measurements (using a SPAD meter) of leaf-scale CHLl and Nl concentrations in 93 fields representing crop- and grasslands of the five landscapes. Furthermore, empirical relationships between field measurements (LAI, CHLl and Nl and five spectral vegetation indices (the Normalized Difference Vegetation Index, the Simple Ratio, the Enhanced Vegetation Index-2, the Green Normalized Difference Vegetation Index, and the green chlorophyll index) were used to assess field data coherence and to serve as a comparison basis for assessing REGFLEC model performance. The field measurements showed strong vertical CHLl gradient profiles in 26% of fields which affected REGFLEC performance as well as the relationships between spectral vegetation indices (SVIs) and field measurements. When the range of surface types increased, the REGFLEC results were in better agreement with field data than the empirical SVI regression models. Selecting only homogeneous canopies with uniform CHLl distributions as reference data for evaluation, REGFLEC was able to explain 69% of LAI observations (rmse = 0.76), 46% of measured canopy chlorophyll contents (rmse = 719 mg m−2) and 51% of measured canopy nitrogen contents (rmse = 2.7 g m−2). Better results were obtained for individual landscapes, except for Italy, where REGFLEC performed poorly due to a lack of dense vegetation canopies at the time of satellite recording. Presence of vegetation is needed to parameterize the REGFLEC model. Combining REGFLEC- and SVI-based model results to minimize errors for a "snap-shot" assessment of total leaf nitrogen pools in the five landscapes, results varied from 0.6 to 4.0 t km−2. Differences in leaf nitrogen pools between landscapes are attributed to seasonal variations, extents of agricultural area, species variations, and spatial variations in nutrient availability. In order to facilitate a substantial assessment of variations in Nl pools and their relation to landscape based nitrogen and carbon cycling processes, time series of satellite data are needed. The upcoming Sentinel-2 satellite mission will provide new multiple narrowband data opportunities at high spatio-temporal resolution which are expected to further improve remote sensing capabilities for mapping LAI, CHLl and Nl.

Combining tree ring analysis and remote sensing to assess the 2017 black pine dieback in Vinschgau/Val Venosta (Italy)

2020 ◽  
Author(s):  
Nikolaus Obojes ◽  
Jennifer Klemm ◽  
Ruth Sonnenschein ◽  
Francesco Giammarchi ◽  
Giustino Tonon ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Tree Ring ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Black Pine ◽  
Growth Data ◽  
Tree Vitality ◽  
Mountain Terrain ◽  
Ring Analysis

<p>To prevent further erosion of pastures along the south slopes of the Vinschgau/Val Venosta (South Tyrol/Italy) about 900 ha of non-native black pine (Pinus nigra) have been afforested there between 1900 and the 1960s. This drought-tolerant Mediterranean species was supposed to be able to cope with the dry climate at degraded soils in the inner-alpine dry valley. Nevertheless, black pine in the Vinschgau has been affected by reoccurring tree vitality decline and diebacks in the last 20 years linked to repeated droughts and heat waves. Observing growth trends via tree ring analysis is usually restricted to single stands. On the other hand, remote sensing data to track tree vitality was not available in sufficient spatial and temporal resolution to be applied to complex mountain terrain until recently. This has changed with the launch of the Sentinel-2 A and B satellites in 2015 and 2017 with a spatial resolution of 10 to 20 m and a revisiting period of 5 days. To analyse the accordance of remote sensing-based vegetation indices to tree-ring based growth data, we compared twelve sites across the Vinschgau/Val Venosta with a differing degree of vitality loss in 2017 for a four-year period from 2015 to 2018. In general, less vital sites were located at lower elevation and on steeper slopes. Radial tree growth was positively correlated to spring precipitation and strongly decreased during earlier hot and dry years such as 1995 and 2003. We found high and statistically significant correlations between site-average basal area increment as well as tree ring width indices and multiple vegetation indices (Normalized Difference Vegetation Index NDVI, Green Normalized Difference Vegetation Index GNDVI, Normalized Difference Infrared Index NDII, Moisture Stress Index MSI) especially for the dry 2017 growing season and the 2018 recovery year, which had large gradients in tree vitality between sites. Overall, these results show that remote sensing-based vegetation indices can be used to scale up stand level growth data also in complex mountain terrain.</p>

scholarly journals Früherkennung von Buchdruckerbefall dank Fern erkundung: Was ist schon möglich?

2020 ◽  
Vol 171 (1) ◽  
pp. 36-43 ◽  
Author(s):  
Luzia Götz ◽  
Achilleas Psomas ◽  
Harald Bugmann
Keyword(s):  
Remote Sensing ◽  
Early Detection ◽  
Bark Beetle ◽  
Vegetation Indices ◽  
Remote Sensing Data ◽  
Cost Effective ◽  
Hyperspectral Data ◽  
Time Saving ◽  
Federal Institute ◽  
Institute Of Technology

Early detection of bark beetle infestations by remote sensing: what is feasible today? Infestation by the Norway spruce (Picea abies) bark beetle (Ips typographus) in uniform forest stands of the high montane and subalpine stage is a major challenge for management. It is impossible to identify in time all susceptible or already infested spruces in the often steep terrain solely by terrestrial observations and to prevent the proliferation of the beetle. A time-saving, cost-effective and effective method for finding these spruces is necessary and remote sensing techniques appear promising. Therefore, we investigated the potential of hyperspectral remote sensing data for the early detection of stressed or infested spruces using a case study in the experimental forest of the Swiss Federal Institute of Technology Zurich (ETHZ) in Sedrun. The approach that we developed is based on a combination of field surveys, hyperspectral data, vegetation indices calculated from these and their classification into the three classes “dead”, “stressed” and “healthy” using Random Forests, a machine-learning approach. We demonstrate that stressed spruces can be identified with this approach, but it is not yet ready for operational use. In particular, a slope-specific calibration of the method is necessary, which makes practical application impossible.

scholarly journals Evaluation of Organic Camelina Crop Under Different Tillage Systems and Fertilization Types Using Proximal Remote Sensing

2020 ◽  
Vol 77 (1) ◽  
pp. 1
Author(s):  
Foteini ANGELOPOULOU ◽  
Evangelos ANASTASIOU ◽  
Spyros FOUNTAS ◽  
Dimitrios BILALIS
Keyword(s):  
Remote Sensing ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Crop Growth ◽  
Growth And Yield ◽  
Tillage Systems ◽  
Minimum Tillage ◽  
Spectral Vegetation Indices ◽  
Crop Parameters

A field experiment was conducted in Southern Greece to assess Normalized Difference Vegetation Index (NDVI) and Red-Edge Normalized Difference Vegetation Index (NDRE) in estimating Camelina’s crop growth and yield parameters under different tillage systems (conventional and minimum tillage) and organic fertilization types (compost, vermicompost and untreated control). A proximal canopy sensor was used to measure the aforementioned Spectral Vegetation Indices (SVIs) at different days after sowing (DAS). Camelina presented the highest values of NDVI and NDRE under compost fertilization (0.63 and 0.22 accordingly) and minimum tillage system (0.50 and 0.18 accordingly). Additionally, the highest correlations between the measured crop parameters and NDVI, NDRE were achieved at leaf development to early flowering stage. Moreover, NDRE presented the highest correlation with seed yield (R2=0.60, p<0.05) and thus it is suggested for estimating Camelina’s productivity instead of NDVI. Finally, further research is needed for adopting the use of remote sensing technologies on predicting Camelina’s crop growth and yield.

Comparison of UAV RGB Imagery and Hyperspectral Remote-sensing Data for Monitoring Winter-wheat Growth

2021 ◽  
Author(s):  
Haikuan Feng ◽  
Huilin Tao ◽  
Chunjiang Zhao ◽  
Zhenhai Li ◽  
Guijun Yang
Keyword(s):  
Remote Sensing ◽  
Spectral Index ◽  
Vegetation Index ◽  
Crop Growth ◽  
Hyperspectral Data ◽  
Growth Stages ◽  
Growth Monitoring ◽  
Estimation Model ◽  
Area Index ◽  
Simple Ratio

Abstract Background: Although crop-growth monitoring is important for agricultural managers, it has always been a difficult research topic. However, unnamed aerial vehicles (UAVs) equipped with RGB and hyperspectral cameras can now acquire high-resolution remote-sensing images, which facilitates and accelerates such monitoring. Results: To explore the effect of monitoring a single crop-growth indicator and multiple indicators, this study combines six growth indicators (plant nitrogen content, above-ground biomass, plant water content, chlorophyll, leaf area index, and plant height) into a new comprehensive growth index (CGI). We investigate the performance of RGB imagery and hyperspectral data for monitoring crop growth based on multi-time estimation of the CGI. The CGI is estimated from the vegetation indices based on UAV hyperspectral data treated by linear, nonlinear, and multiple linear regression (MLR), partial least squares (PLSR), and random forest (RF). The results show that (1) the RGB-imagery indices red reflectance (r), the excess-red index(EXR), the vegetation atmospherically resistant index(VARI), and the modified green-red vegetation index(MGRVI) , as well as the spectral indices consisting of the linear combination index (LCI), the modified simple ratio index(MSR), the simple ratio vegetation index(SR), and the normalized difference vegetation index (NDVI)are more strongly correlated with the CGI than a single growth-monitoring indicator (2) The CGI estimation model is constructed by comparing a single RGB-imagery index and a spectral index, and the optimal RGB-imagery index corresponding to each of the four growth stage in order is r, r, r, EXR; the optimal spectral index is LCI for all four growth stages. (3) The MLR, PLSR, and RF methods are used to estimate the CGI. The MLR method produces the best estimates. (4) Finally, the CGI is more accurately estimated using the UAV hyperspectral indices than using the RGB-image indices.Conclusions: UAVs carrying RGB cameras and hyperspectral cameras have high inversion CGI accuracy and can judge the overall growth of wheat can provide a reference for monitoring the growth of wheat.

scholarly journals Mining and Restoration Monitoring of Rare Earth Element (REE) Exploitation by New Remote Sensing Indicators in Southern Jiangxi, China

2020 ◽  
Vol 12 (21) ◽  
pp. 3558
Author(s):  
Lifeng Xie ◽  
Weicheng Wu ◽  
Xiaolan Huang ◽  
Penghui Ou ◽  
Ziyu Lin ◽  
...  
Keyword(s):  
Remote Sensing ◽  
Rare Earth ◽  
Land Surface ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Rapid Expansion ◽  
Open Pit ◽  
Open Pit Mining ◽  
Chemical Extraction

Rare earth elements (REEs) are widely used in various industries. The open-pit mining and chemical extraction of REEs in the weathered crust in southern Jiangxi, China, since the 1970s have provoked severe damages to the environment. After 2010, different restorations have been implemented by various enterprises, which seem to have a spatial variability in both management techniques and efficiency from one mine to another. A number of vegetation indices, e.g., normalized difference vegetation index (NDVI), soil-adjusted vegetation index (SAVI), enhanced vegetation index (EVI) and atmospherically resistant vegetation index (ARVI), can be used for this kind of monitoring and assessment but lack sensitivity to subtle differences. For this reason, the main objective of this study was to explore the possibility to develop new, mining-tailored remote sensing indicators to monitor the impacts of REE mining on the environment and to assess the effectiveness of its related restoration using multitemporal Landsat data from 1988 to 2019. The new indicators, termed mining and restoration assessment indicators (MRAIs), were developed based on the strong contrast of spectral reflectance, albedo, land surface temperature (LST) and tasseled cap brightness (TCB) of REE mines between mining and postmining restoration management. These indicators were tested against vegetation indices such as NDVI, EVI, SAVI and generalized difference vegetation index (GDVI), and found to be more sensitive. Of similar sensitivity to each other, one of the new indicators was employed to conduct the restoration assessment of the mined areas. Six typically managed mines with different restoration degrees and management approaches were selected as hotspots for a comparative analysis to highlight their temporal trajectories using the selected MRAI. The results show that REE mining had experienced a rapid expansion in 1988–2010 with a total mined area of about 66.29 km2 in the observed counties. With implementation of the post-2010 restoration measures, an improvement of varying degrees in vegetation cover in most mines was distinguished and quantified. Hence, this study with the newly developed indicators provides a relevant approach for assessing the sustainable exploitation and management of REE resources in the study area.

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