Early stress detection in grapevine – can remotely-sensed sun-induced chlorophyll fluorescence do the job?

2021 ◽  
Author(s):  
Georg Wohlfahrt ◽  
Albin Hammerle ◽  
Barbara Rainer ◽  
Florian Haas
Keyword(s):  
Chlorophyll Fluorescence ◽  
Vegetation Index ◽  
Near Infrared ◽  
Census Data ◽  
Meteorological Data ◽  
Vegetation Indices ◽  
Wavelength Region ◽  
Remote Sensing Data ◽  
Warning Signs ◽  
Mitigation Measures

<p>Ongoing changes in climate (both in the means and the extremes) are increasingly challenging grapevine production in the province of South Tyrol (Italy). Here we ask the question whether sun-induced chlorophyll fluorescence (SIF) observed remotely from space can detect early warning signs of stress in grapevine and thus help guide mitigation measures.</p><p>Chlorophyll fluorescence refers to light absorbed by chlorophyll molecules that is re-emitted in the red to far-red wavelength region. Previous research at leaf and canopy scale indicated that SIF correlates with the plant photosynthetic uptake of carbon dioxide as it competes for the same energy pool.</p><p>To address this question, we use time series of two down-scaled SIF products (GOME-2 and OCO-2, 2007/14-2018) as well as the original OCO-2 data (2014-2019). As a benchmark, we use several vegetation indices related to canopy greenness, as well as a novel near-infrared radiation-based vegetation index (2000-2019). Meteorological data fields are used to explore possible weather-related causes for observed deviations in remote sensing data. Regional DOC grapevine census data (2000-2019) are used as a reference for the analyses.</p>

scholarly journals Development of forest cover mask to monitor the health condition of forests in Poland using long-term satellite observations

2016 ◽  
Vol 77 (2) ◽  
pp. 141-150
Author(s):  
Maciej Bartold
Keyword(s):  
Vegetation Index ◽  
Forest Cover ◽  
Normalized Difference Vegetation Index ◽  
Meteorological Data ◽  
Vegetation Indices ◽  
Forest Health ◽  
Remote Sensing Data ◽  
Forest Regions ◽  
The Impact

Abstract The work presented here aims at developing cover mask for monitoring forest health in Poland using remote sensing data. The main objective was to assess the impact of using the mask on forest condition monitoring combined with vegetation indices obtained from long-term satellite data. In this study, a new mask developed from the CORINE Land Cover 2012 (CLC2012) database is presented and its one-kilometer pixel size matched to low-resolution data derived from SPOT VEGETATION satellite registrations. For vegetation mapping, only pixels with a cover ≥ 50% of broad-leaved and mixed forests defined by CLC2012 were taken into account. The masked pixels were used to evaluate spatial variability in eight Natural-Forest Regions (NFRs). The largest coverages by masked forests were obtained in Sudetian (65.7%), Carpathian (65.9%) and Baltic (51.3%) regions. For other forest regions the coverage was observed to be around 30-50%. Time-series of the Normalized Difference Vegetation Index (NDVI) comprising SPOT VEGETATION images from 1998 until 2014 were computed and cross-comparison analyses on ≥ 50% and < 50% forest cover masks brought up frequent differences at a level higher than 0.05 NDVI in seven out of eight NFRs. An exception is the Sudetian region, where the data was highly consistent. Furthermore, the Mann-Whitney U non-parametric test revealed statistically significant differences in two regions: Baltic and Masurian-Podlasie NFR. The comparative analysis of NDVI confirmed that there is a need for additional investigation of the quality of newly developed forest mask combined with vegetation and meteorological data.

scholarly journals Understanding Vine Hyperspectral Signature through Different Irrigation Plans: A First Step to Monitor Vineyard Water Status

2021 ◽  
Vol 13 (3) ◽  
pp. 536
Author(s):  
Eve Laroche-Pinel ◽  
Mohanad Albughdadi ◽  
Sylvie Duthoit ◽  
Véronique Chéret ◽  
Jacques Rousseau ◽  
...  
Keyword(s):  
Near Infrared ◽  
Water Status ◽  
Vegetation Indices ◽  
Remote Sensing Data ◽  
Short Wave ◽  
Spatial And Temporal Scales ◽  
Spectral Bands ◽  
Main Challenge ◽  
Spectral Scale ◽  
Grape Varieties

The main challenge encountered by Mediterranean winegrowers is water management. Indeed, with climate change, drought events are becoming more intense each year, dragging the yield down. Moreover, the quality of the vineyards is affected and the level of alcohol increases. Remote sensing data are a potential solution to measure water status in vineyards. However, important questions are still open such as which spectral, spatial, and temporal scales are adapted to achieve the latter. This study aims at using hyperspectral measurements to investigate the spectral scale adapted to measure their water status. The final objective is to find out whether it would be possible to monitor the vine water status with the spectral bands available in multispectral satellites such as Sentinel-2. Four Mediterranean vine plots with three grape varieties and different water status management systems are considered for the analysis. Results show the main significant domains related to vine water status (Short Wave Infrared, Near Infrared, and Red-Edge) and the best vegetation indices that combine these domains. These results give some promising perspectives to monitor vine water status.

scholarly journals Rapid Quantification of Microalgae Growth with Hyperspectral Camera and Vegetation Indices

Plants ◽  
2021 ◽  
Vol 10 (2) ◽  
pp. 341
Author(s):  
Pauliina Salmi ◽  
Matti A. Eskelinen ◽  
Matti T. Leppänen ◽  
Ilkka Pölönen
Keyword(s):  
Chlorophyll Fluorescence ◽  
Chlorophyll A ◽  
Near Infrared ◽  
Vegetation Indices ◽  
Hyperspectral Data ◽  
Strong Correlations ◽  
Algae Biomass ◽  
Chlorophyll A Concentration ◽  
Cost Efficient ◽  
Hyperspectral Camera

Spectral cameras are traditionally used in remote sensing of microalgae, but increasingly also in laboratory-scale applications, to study and monitor algae biomass in cultures. Practical and cost-efficient protocols for collecting and analyzing hyperspectral data are currently needed. The purpose of this study was to test a commercial, easy-to-use hyperspectral camera to monitor the growth of different algae strains in liquid samples. Indices calculated from wavebands from transmission imaging were compared against algae abundance and wet biomass obtained from an electronic cell counter, chlorophyll a concentration, and chlorophyll fluorescence. A ratio of selected wavebands containing near-infrared and red turned out to be a powerful index because it was simple to calculate and interpret, yet it yielded strong correlations to abundances strain-specifically (0.85 < r < 0.96, p < 0.001). When all the indices formulated as A/B, A/(A + B) or (A − B)/(A + B), where A and B were wavebands of the spectral camera, were scrutinized, good correlations were found amongst them for biomass of each strain (0.66 < r < 0.98, p < 0.001). Comparison of near-infrared/red index to chlorophyll a concentration demonstrated that small-celled strains had higher chlorophyll absorbance compared to strains with larger cells. The comparison of spectral imaging to chlorophyll fluorescence was done for one strain of green algae and yielded strong correlations (near-infrared/red, r = 0.97, p < 0.001). Consequently, we described a simple imaging setup and information extraction based on vegetation indices that could be used to monitor algae cultures.

scholarly journals Using remote sensing for identification of late-season grass weed patches in wheat

Weed Science ◽  
2006 ◽  
Vol 54 (02) ◽  
pp. 346-353 ◽  
Author(s):  
Francisca López-Granados ◽  
Montse Jurado-Expósito ◽  
Jose M. Peña-Barragán ◽  
Luis García-Torres
Keyword(s):  
Vegetation Index ◽  
Near Infrared ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Field Research ◽  
Aerial Images ◽  
Wild Oat ◽  
Late Season ◽  
High Resolution Satellite Imagery ◽  
Grass Weed

Field research was conducted to determine the potential of hyperspectral and multispectral imagery for late-season discrimination and mapping of grass weed infestations in wheat. Differences in reflectance between weed-free wheat and wild oat, canarygrass, and ryegrass were statistically significant in most 25-nm-wide wavebands in the 400- and 900-nm spectrum, mainly due to their differential maturation. Visible (blue, B; green, G; red, R) and near infrared (NIR) wavebands and five vegetation indices: Normalized Difference Vegetation Index (NDVI), Ratio Vegetation Index (RVI), R/B, NIR-R and (R − G)/(R + G), showed potential for discriminating grass weeds and wheat. The efficiency of these wavebands and indices were studied by using color and color-infrared aerial images taken over three naturally infested fields. In StaCruz, areas infested with wild oat and canarygrass patches were discriminated using the indices R, NIR, and NDVI with overall accuracies (OA) of 0.85 to 0.90. In Florida–West, areas infested with wild oat, canarygrass, and ryegrass were discriminated with OA from 0.85 to 0.89. In Florida–East, for the discrimination of the areas infested with wild oat patches, visible wavebands and several vegetation indices provided OA of 0.87 to 0.96. Estimated grass weed area ranged from 56 to 71%, 43 to 47%, and 69 to 80% of the field in the three locations, respectively, with per-class accuracies from 0.87 to 0.94. NDVI was the most efficient vegetation index, with a highly accurate performance in all locations. Our results suggest that mapping grass weed patches in wheat is feasible with high-resolution satellite imagery or aerial photography acquired 2 to 3 wk before crop senescence.

scholarly journals Evaluation and Normalization of Topographic Effects on Vegetation Indices

2020 ◽  
Vol 12 (14) ◽  
pp. 2290
Author(s):  
Rui Chen ◽  
Gaofei Yin ◽  
Guoxiang Liu ◽  
Jing Li ◽  
Aleixandre Verger
Keyword(s):  
Vegetation Index ◽  
Near Infrared ◽  
Vegetation Indices ◽  
Topographic Effects ◽  
Terrestrial Vegetation ◽  
Mountainous Areas ◽  
Near Infrared Reflectance ◽  
Illumination Condition ◽  
Vegetation Monitoring ◽  
Local Illumination

The normalization of topographic effects on vegetation indices (VIs) is a prerequisite for their proper use in mountainous areas. We assessed the topographic effects on the normalized difference vegetation index (NDVI), the enhanced vegetation index (EVI), the soil adjusted vegetation index (SAVI), and the near-infrared reflectance of terrestrial vegetation (NIRv) calculated from Sentinel-2. The evaluation was based on two criteria: the correlation with local illumination condition and the dependence on aspect. Results show that topographic effects can be neglected for the NDVI, while they heavily influence the SAVI, EVI, and NIRv: the local illumination condition explains 19.85%, 25.37%, and 26.69% of the variation of the SAVI, EVI, and NIRv, respectively, and the coefficients of variation across different aspects are, respectively, 8.13%, 10.46%, and 14.07%. We demonstrated the applicability of existing correction methods, including statistical-empirical (SE), sun-canopy-sensor with C-correction (SCS + C), and path length correction (PLC), dedicatedly designed for reflectance, to normalize topographic effects on VIs. Our study will benefit vegetation monitoring with VIs over mountainous areas.

Evaluation of a Low-cost Camera for Agricultural Applications

2019 ◽  
pp. 1-9 ◽  
Author(s):  
Abdon Francisco Aureliano Netto ◽  
Rodrigo Nogueira Martins ◽  
Guilherme Silverio Aquino De Souza ◽  
Fernando Ferreira Lima Dos Santos ◽  
Jorge Tadeu Fim Rosas
Keyword(s):  
Vegetation Index ◽  
Near Infrared ◽  
Normalized Difference Vegetation Index ◽  
Low Cost ◽  
Vegetation Indices ◽  
Paspalum Notatum ◽  
Crop Canopy ◽  
N Application ◽  
Satisfactory Accuracy ◽  
Agricultural Applications

This study aimed to modify a webcam by replacing its near-infrared (NIR) blocking filter to a low-cost red, green and blue (RGB) filter for obtaining NIR images and to evaluate its performance in two agricultural applications. First, the sensitivity of the webcam to differentiate normalized difference vegetation index (NDVI) levels through five nitrogen (N) doses applied to the Batatais grass (Paspalum notatum Flugge) was verified. Second, images from maize crops were processed using different vegetation indices, and thresholding methods with the aim of determining the best method for segmenting crop canopy from the soil. Results showed that the webcam sensor was capable of detecting the effect of N doses through different NDVI values at 7 and 21 days after N application. In the second application, the use of thresholding methods, such as Otsu, Manual, and Bayes when previously processed by vegetation indices showed satisfactory accuracy (up to 73.3%) in separating the crop canopy from the soil.

scholarly journals Evaluation of Soil Degradation Based on High Resolution Remote Sensing Data

2005 ◽  
pp. 145-148
Author(s):  
Péter Burai ◽  
János Tamás
Keyword(s):  
Remote Sensing ◽  
High Resolution ◽  
Soil Salinity ◽  
Strong Correlation ◽  
Soil Degradation ◽  
Vegetation Index ◽  
Near Infrared ◽  
Salt Content ◽  
Remote Sensing Data ◽  
Test Site

Soil salinity is the main problem of soil degradation in the Grate Plain with cultivated area of 20% affected. Its influence is accelerated on the water managed and irrigated lands. Remote sensing can significantly contribute to detecting temporal changes of salt-related surface features. We have chosen a farm where intensive crop cultivation takes place as a test site as soil degradation can be intensive as a result of land use and irrigation. In order to evaluate soil salt content and biomass analysis, we gathered detailed data from an 100x250 m area. We analyzed the salinity property of the samples. In our research we used a TETRACAM ADC multispectral camera to take high resolution images (0,2-0,5 m) of low altitude (300-500 m). A Normalized Vegetation Index was computed from near infrared (750-950 nm) and red (620-750 nm) bands. This data was compared with the samples of investigated area. Analyzing the images, we evaluated image reliability, and the connection between the bands and the soil properties (pH, salt content). A strong correlation observed between NDVI and soil salinity (EC) makes the multispectral images suitable for construction of salinity map. A further strong correlation was determined between NDVI and yield.

scholarly journals Seasonal dynamics of lingonberry and blueberry spectra

Silva Fennica ◽  
2019 ◽  
Vol 53 (2) ◽  
Author(s):  
Petri Forsström ◽  
Jouni Peltoniemi ◽  
Miina Rautiainen
Keyword(s):  
Vegetation Index ◽  
Near Infrared ◽  
Normalized Difference Vegetation Index ◽  
Reference Data ◽  
Leaf Growth ◽  
Vegetation Indices ◽  
Growing Season ◽  
Moisture Stress ◽  
Stress Index ◽  
Infrared Spectral

Accurate mapping of the spatial distribution of understory species from spectral images requires ground reference data which represent the prevailing phenological stage at the time of image acquisition. We measured the spectral bidirectional reflectance factors (BRFs, 350–2500 nm) at varying view angles for lingonberry ( L.) and blueberry ( L.) throughout the growing season of 2017 using Finnish Geospatial Research Institute’s FIGIFIGO field goniometer. Additionally, we measured spectra of leaves and berries of both species, and flowers of lingonberry. Both lingonberry and blueberry showed seasonality in visible and near-infrared spectral regions which was linked to occurrences of leaf growth, flowering, berrying, and leaf senescence. The seasonality of spectra differed between species due to different phenologies (evergreen vs. deciduous). Vegetation indices, normalized difference vegetation index (NDVI), moisture stress index (MSI), plant senescence reflectance index (PSRI), and red-edge inflection point (REIP2), showed characteristic seasonal trends. NDVI and PSRI were sensitive to the presence of flowers and berries of lingonberry, while with blueberry the effects were less evident. Off-nadir observations supported differentiating the dwarf shrub species from each other but showed little improvement for detection of flowers and berries. Lingonberry and blueberry can be identified by their spectral signatures if ground reference data are available over the entire growing season. The spectral data measured in this study are reposited in the publicly open SPECCHIO Spectral Information System.Vaccinium vitis-idaeaVaccinium myrtillus

scholarly journals Using remote sensing data in population density estimation

2021 ◽  
Author(s):  
E.G. Shvetsov ◽  
N.M. Tchebakova ◽  
E.I. Parfenova
Keyword(s):  
Remote Sensing ◽  
Spatial Distribution ◽  
Population Density ◽  
Vegetation Index ◽  
Census Data ◽  
Remote Sensing Data ◽  
Satellite System ◽  
Population Census ◽  
Krasnoyarsk Krai ◽  
Using Data

In recent decades, remote sensing methods have often been used to estimate population density, especially using data on nighttime illumination. Information about the spatial distribution of the population is important for understanding the dynamics of cities and analyzing various socio-economic, environmental and political factors. In this work, we have formed layers of the nighttime light index, surface temperature and vegetation index according to the SNPP/VIIRS satellite system for the territory of the central and southern regions of the Krasnoyarsk krai. Using these data, we have calculated VTLPI (vegetation temperature light population index) for the year 2013. The obtained values of the VTLPI calculated for a number of settlements of the Krasnoyarsk krai were compared with the results of the population census conducted in 2010. In total, we used census data for 40 settlements. Analysis of the data showed that the relationship between the value of the VTLPI index and the population density in the Krasnoyarsk krai can be adequately fitted (R 2 = 0.65) using a linear function. In this case, the value of the root-meansquare error was 345, and the relative error was 0.09. Using the obtained model equation and the spatial distribution of the VTLPI index using GIS tools, the distribution of the population over the study area was estimated with a spatial resolution of 500 meters. According to the obtained model and the VTLPI index, the average urban population density in the study area exceeded 500 people/km2 . Comparison of the obtained data on the total population in the study area showed that the estimate based on the VTLPI index is about 21% higher than the actual census data.

scholarly journals Determining Spatial Parameters of the Ecological Niche of Parus Major (Passeriformes, Paridae) on the Base of Remote Sensing Data

2016 ◽  
Vol 50 (3) ◽  
pp. 251-258
Author(s):  
А. A. Zimaroeva ◽  
O. V. Zhukov ◽  
O. L. Ponomarenko
Keyword(s):  
Ecological Niche ◽  
Vegetation Index ◽  
Normalized Difference Vegetation Index ◽  
Vegetation Indices ◽  
Parus Major ◽  
Remote Sensing Data ◽  
Great Tit ◽  
Ecological Niches ◽  
Water Index ◽  
Preference Map

Abstract Using factor analysis of ecological niches, we found that Parus major has high marginality to such ecogeographical variables (EGVs), as normalized difference vegetation index, the altitude above sea level, the diffuse insolation, activity of chlorophyll, normalized difference water index. This species is highly specialized in relation to various vegetation indices. Based on the type of habitat preference map, we found that Parus major doesn’t implement all its potential pro-spatial niche. Considering the ecological niche of great tit on different levels of scale, we noticed certain features: first, a list of factors that influence the distribution of great tit significantly altered by changing the scale, secondly, the factors that play a significant role in spreading Parus major on level of total consideration losing their weight and relevance on closer inspection (when the scale down); third, although specialization of great tits changes with the scale of consideration but Parus major mostly specialized by vegetation index.

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