scholarly journals Scaling of subcellular actin structures with cell length through decelerated growth

eLife ◽  
2021 ◽  
Vol 10 ◽  
Author(s):  
Shane G McInally ◽  
Jane Kondev ◽  
Bruce L Goode

How cells tune the size of their subcellular parts to scale with cell size is a fundamental question in cell biology. Until now, most studies on the size control of organelles and other subcellular structures have focused on scaling relationships with cell volume, which can be explained by limiting pool mechanisms. Here, we uncover a distinct scaling relationship with cell length rather than volume, revealed by mathematical modeling and quantitative imaging of yeast actin cables. The extension rate of cables decelerates as they approach the rear of the cell, until cable length matches cell length. Further, the deceleration rate scales with cell length. These observations are quantitatively explained by a 'balance-point' model, which stands in contrast to the limiting pool mechanisms and that senses the linear dimensions of the cell.

2021 ◽  
Author(s):  
Shane G. McInally ◽  
Jane Kondev ◽  
Bruce L. Goode

AbstractHow cells tune the size of their subcellular parts to scale with cell size is a fundamental question in cell biology. Until now, most studies on the size control of organelles and other subcellular structures have focused on scaling relationships with cell volume, which can be explained by limiting pool mechanisms. Here, we uncover a distinct scaling relationship with cell length rather than volume, revealed by mathematical modeling and quantitative imaging of yeast actin cables. The extension rate of cables decelerates as they approach the rear of the cell, until cable length matches cell length. Further, the deceleration rate scales with cell length. These observations reveal a new mode of scaling that senses the linear dimensions of a cell.One Sentence SummaryAs actin cables in yeast cells grow longer, their extension rate decelerates, enabling the cable length to match cell length.


2019 ◽  
Author(s):  
Kiandokht Panjtan Amiri ◽  
Asa Kalish ◽  
Shankar Mukherji

ABSTRACTOne of the grand challenges in quantitative cell biology is understanding the precision with which cells assemble and maintain subcellular organelles. A critical property that governs organelle function is its size. Organelle sizes must be flexible enough to allow cells to grow or shrink them as environments demand, yet be maintained within homeostatic limits. Despite identification of numerous molecular factors that regulate organelle sizes we lack insight into the quantitative principles underlying organelle size control. Here we examine organelle sizes from Saccharomyces cerevisiae and human iPS cells with mathematical theory to show that cells can robustly control average fluctuations in organelle size. By demonstrating that organelle sizes obey a universal scaling relationship we predict theoretically, our framework suggests that organelles grow in random bursts from a limited pool of building blocks. Burst-like growth provides a general biophysical mechanism by which cells can maintain on average reliable yet plastic organelle sizes.


2016 ◽  
Author(s):  
Lishibanya Mohapatra ◽  
Thibaut J. Lagny ◽  
David Harbage ◽  
Predrag R. Jelenkovic ◽  
Jane Kondev

AbstractHow the size of organelles in cells is controlled despite a constant turnover of their constituent parts is a central problem in cell biology. A general mechanism has been proposed based on the idea that an organelle grows by self-assembly of molecular subunits that freely diffuse in the cytoplasm. Assembly continues until the available pool of subunits is depleted to the point when the stochastic addition and removal of subunits is balanced, leading to a structure of well-defined size. Here we focus on length control of multiple filamentous structures in cells, such as actin cables and flagella. Using queueing theory and computation we show that the limiting pool mechanism leads to three different phases of assembly, starting with a rapid growth phase when all filaments quickly accumulate a large number of available subunits. Then, the slower growing filamentous structures enter a disassembly phase as they gradually lose all of their subunits to the faster growing structures. Finally, when multiple, equivalent fast-growing filaments are present, their lengths undergo protracted diffusive dynamics due to the stochastic swapping of subunits between them. This eventually leads to a broad, power-law distribution of filament lengths in steady state. Our findings demonstrate that the limiting-pool mechanism is incapable of controlling lengths of multiple filamentous structures that are assembled from a common pool of subunits, and at best, can produce only one filament of a well-defined size. Overall, our theoretical results reveal physical limitations of the limiting-pool mechanism of organelle size control.Significance StatementWhat determines the size of organelles in cells is a classic problem in cell biology. Recent experiments on mitotic spindles, and nucleolus have singled out the limiting-pool mechanism of size control. As these structures assemble, they deplete a finite pool of subunits present in the cell, thereby reducing the rate of subunit addition. Eventually the stochastic addition and removal of subunits are balanced and a well-defined size is achieved. We find that, while the limiting-pool mechanism does control the size of an individual structure, it fails when multiple structures are competing for the same pool of subunits. In that case we predict large size fluctuations and that the fastest growing structure takes up practically all the subunits from the pool.


2017 ◽  
Vol 28 (11) ◽  
pp. 1519-1529 ◽  
Author(s):  
Alison K. Spencer ◽  
Andrew J. Schaumberg ◽  
Jennifer A. Zallen

Spatially organized macromolecular complexes are essential for cell and tissue function, but the mechanisms that organize micron-scale structures within cells are not well understood. Microtubule-based structures such as mitotic spindles scale with cell size, but less is known about the scaling of actin structures within cells. Actin-rich denticle precursors cover the ventral surface of the Drosophila embryo and larva and provide templates for cuticular structures involved in larval locomotion. Using quantitative imaging and statistical modeling, we demonstrate that denticle number and spacing scale with cell length over a wide range of cell sizes in embryos and larvae. Denticle number and spacing are reduced under space-limited conditions, and both features robustly scale over a 10-fold increase in cell length during larval growth. We show that the relationship between cell length and denticle spacing can be recapitulated by specific mathematical equations in embryos and larvae and that accurate denticle spacing requires an intact microtubule network and the microtubule minus end–binding protein, Patronin. These results identify a novel mechanism of micro­tubule-dependent actin scaling that maintains precise patterns of actin organization during tissue growth.


Blood ◽  
2009 ◽  
Vol 114 (22) ◽  
pp. 1455-1455
Author(s):  
Cesar Nombela-Arrieta ◽  
Brendan Harley ◽  
Gregory Pivarnik ◽  
John E Mahoney ◽  
Elena Levantini ◽  
...  

Abstract Abstract 1455 Poster Board I-478 Sustained production of all mature blood cell types relies on the continuous proliferation and differentiation of a rare population of self-renewing, multipotent hematopoietic stem cells (HSCs). HSC maintenance and lineage differentiation are thought to be regulated by spatially confined niches, defined by cellular components, soluble regulators, and the extracellular matrix immediately surrounding stem cells. Identification of these microenvironments in which endogenous and transferred HSCs reside within the BM is a major challenge in stem cell biology with relevant clinical implications. Yet the extreme rarity of HSCs, their dynamic nature, and the lack of specific markers to identify them, have precluded an accurate definition of HSC niches to date. Quantitative imaging technologies such as Laser Scanning Cytometry (LSC) are designed for the automated analysis of large cell numbers at a single cell level with high resolution while preserving the morphological information lost in flow cytometry, therefore providing data of statistical significance even for rare cell populations such as HSCs. We have employed LSC to analyze the localization of both adoptively transferred and endogenous hematopoietic stem and progenitor cell (HSPC) populations inside whole longitudinal sections of murine femoral BM cavities. Our results indicate that, as previously suggested, purified HSPC (Lin−c-kit+Sca-1+) significantly accumulate in endosteal regions (ER) of BM cavities (within 100μm of inner bone surface) upon transplantation. Nevertheless, analysis of sufficient numbers of more differentiated cell subsets (Lin−c-kit+Sca-1− progenitors, pro B cells and mature B cells) indicated that these areas serve as homing sites for most hematopoietic cells, highlighting the limitations of any conclusions drawn on HSC niche identity from studies performed with transferred HSPC populations. Immunofluorescent staining of endogenous cell populations revealed a gradient in distribution of early hematopoietic progenitors (c-kit+), which accumulated in but were not restricted to ER regions. Of note, a vast majority (>80%) of HSPC (Bmi-GFPhic-kit+, or Lin−c-kit+Sca-1+),were found inside ER, although not directly adjacent to endosteal surfaces. Our studies define endosteal areas as tissue regions where HSPC reside in close proximity, but not necessarily in direct contact with a dense vascular network, osteoblastic cells and other potential niche cell types and growth factors currently under investigation. Disclosures No relevant conflicts of interest to declare.


2021 ◽  
Author(s):  
Daniel S Levic ◽  
Naoya Yamaguchi ◽  
Siyao Wang ◽  
Holger Knaut ◽  
Michel Bagnat

Zebrafish provide an excellent model for in vivo cell biology studies due to their amenability to live imaging. Protein visualization in zebrafish has traditionally relied on overexpression of fluorescently tagged proteins from heterologous promoters, making it difficult to recapitulate endogenous expression patterns and protein function. One way to circumvent this problem is to tag the proteins by modifying their endogenous genomic loci. Such an approach is not widely available to zebrafish researchers due to inefficient homologous recombination and the error-prone nature of targeted integration in zebrafish. Here, we report a simple approach for tagging proteins in zebrafish on their N- or C termini with fluorescent markers by inserting PCR-generated donor amplicons into non-coding regions of the corresponding genes. Using this approach, we generated endogenously tagged alleles for several genes critical for epithelial biology and organ development including the tight junction components ZO-1 and Cldn15la, the trafficking effector Rab11a, and the ECM receptor β1 integrin. Our approach facilitates the generation of knock-in lines in zebrafish, opening the way for accurate quantitative imaging studies.


2018 ◽  
Author(s):  
Kishore R. Mosaliganti ◽  
Ian A. Swinburne ◽  
Chon U Chan ◽  
Nikolaus D. Obholzer ◽  
Amelia A. Green ◽  
...  

SUMMARYAnimals make organs of precise size, shape, and symmetry despite noise in underlying molecular and cellular processes. How developing organs manage this noise is largely unknown. Here, we combine quantitative imaging, physical theory, and physiological measurement of hydrostatic pressure and fluid transport in zebrafish to study size control of the developing inner ear. We find that fluid accumulation creates hydrostatic pressure in the lumen leading to stress in the epithelium and expansion of the otic vesicle. Pressure, in turn, inhibits fluid transport into the lumen. This negative feedback loop between pressure and transport allows the otic vesicle to change growth rate to control natural or experimentally-induced size variation. Spatiotemporal patterning of contractility modulates pressure-driven strain for regional tissue thinning. Our work connects moleculardriven mechanisms, such as osmotic pressure driven strain and actomyosin tension, to the regulation of tissue morphogenesis via hydraulic feedback to ensure robust control of organ size.


2014 ◽  
Vol 25 (22) ◽  
pp. 3581-3594 ◽  
Author(s):  
Joe Grove ◽  
Daniel J. Metcalf ◽  
Alex E. Knight ◽  
Silène T. Wavre-Shapton ◽  
Tony Sun ◽  
...  

Clathrin-mediated endocytosis (CME) is a fundamental property of eukaryotic cells. Classical CME proceeds via the formation of clathrin-coated pits (CCPs) at the plasma membrane, which invaginate to form clathrin-coated vesicles, a process that is well understood. However, clathrin also assembles into flat clathrin lattices (FCLs); these structures remain poorly described, and their contribution to cell biology is unclear. We used quantitative imaging to provide the first comprehensive description of FCLs and explore their influence on plasma membrane organization. Ultrastructural analysis by electron and superresolution microscopy revealed two discrete populations of clathrin structures. CCPs were typified by their sphericity, small size, and homogeneity. FCLs were planar, large, and heterogeneous and present on both the dorsal and ventral surfaces of cells. Live microscopy demonstrated that CCPs are short lived and culminate in a peak of dynamin recruitment, consistent with classical CME. In contrast, FCLs were long lived, with sustained association with dynamin. We investigated the biological relevance of FCLs using the chemokine receptor CCR5 as a model system. Agonist activation leads to sustained recruitment of CCR5 to FCLs. Quantitative molecular imaging indicated that FCLs partitioned receptors at the cell surface. Our observations suggest that FCLs provide stable platforms for the recruitment of endocytic cargo.


Blood ◽  
2010 ◽  
Vol 116 (21) ◽  
pp. 1496-1496
Author(s):  
Amir Shamloo ◽  
Milan Manchandia ◽  
Maheswaran Mani ◽  
Christopher Nguyen ◽  
Thomas Jahn ◽  
...  

Abstract Abstract 1496 Besides its cooperating effects on stem cell proliferation and survival, KL (stem cell factor) is a potent chemotactic protein; much of the Kit (-) phenotype is related to loss of chemotaxis of progenitor cells. While transwell assays permit studies of the frequency of migrating cells, the lack of direct visualization during chemotaxis precludes dynamic or detailed studies of cell behavior. We have developed microfluidic biochambers fabricated from optically clear plastic with microcapillaries continuously perfused from source and sink channels to create stable ligand gradients of desired concentration and steepness without mechanical shear forces. We have analyzed KL-induced chemotaxis, using Kit+ cultured murine bone marrow-derived mast cells (BMMC) as a model. BMMC were plated onto fibronectin coated chambers and two linear KL equilibrium concentration profiles were tested (gradients of 4 and 8 ng/ml/mm across a concentration range of 1.5–11 ng/ml) for their ability to induce BMMC chemotaxis. Cell movement and morphology was captured by time-lapse microscopy and quantitatively analyzed for migration rate, frequency and duration of pauses, directional persistence, filopodia extension rate, filopodia asymmetry, and cell perimeter asymmetry. Our results indicate a minimum activating threshold of ∼3 ng/ml is required to induce BMMC chemoattraction. The chemotactic index (CI) is a ratio of distance travelled towards a gradient to total distance travelled (e.g., CI=0 indicates random migration, CI=1 indicates movement in a straight line towards the gradient). Between 3–8 ng/ml, higher KL concentrations resulted in faster cell speed (means 1.0–1.9 μm/min; maximum up to 2.9 μ/min), higher migratory persistence (means 0.2–0.5), higher CI (means 0.05 to 0.42), and greater filopodial formation. Analysis of cells at the lowest KL concentrations revealed a paradoxical chemorepulsive activity, which has not been previously described. The majority of the cells undergo chemorepulsion at KL concentrations 1.5–3 ng/ml. Unlike chemoattraction which was continuous, chemorepulsion only occurs during the first 30–40 minutes of KL stimulation, followed by predominantly random or no migration, i.e., chemorepulsion is followed by a chemotaxis-refractory state. Both chemoattractive and chemorepulsive movements were characterized by filopodia formation on the leading edge of movement. The results with the Kit receptor tyrosine kinase differ significantly from previous studies of G-protein coupled receptors, where chemorepulsion only occurred at high ligand concentrations. The results indicate that Kit-mediated chemotaxis is mainly concentration-dependent; involves complex dose-response relationships; and includes both chemoattractive and chemorepellent phases. Studies of Kit+ hematopoietic stem cells are being performed to determine whether KL chemotactic responses similar to those seen in BMMC are a general phenomenon, which would have major implications for understanding HSC migration, homing and niche relationships, as well as mast cell biology and inflammation. Disclosures: No relevant conflicts of interest to declare.


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