scholarly journals Microbiome analysis of healthy and diseased sponges Lubomirskia baicalensis by using cell cultures of primmorphs

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9080
Author(s):  
Lubov Chernogor ◽  
Elizaveta Klimenko ◽  
Igor Khanaev ◽  
Sergei Belikov
Keyword(s):  
Cell Culture ◽  
Cell Cultures ◽  
Lake Baikal ◽  
Mass Mortality ◽  
Rrna Gene ◽  
Freshwater Sponges ◽  
Lubomirskia Baicalensis ◽  
Sponge Disease ◽  
Microbe Interactions

Endemic sponges (Demosponges, Lubomirskiidae) dominate the fauna of the littoral zone of Lake Baikal. These freshwater sponges live in symbiosis with diverse eukaryotes and prokaryotes, including chlorophyll-containing microalgae. Within the last 5 years, the incidence of sponge disease and mortality events in Lake Baikal has increased. The etiology and ecology of these events remain unknown, in part because of the lack of models to study sponge-microbe interactions. In this work, we tested the use of primmorph cell cultures of Lubomirskia baicalensis as a tool for investigating the microbiomes of sponges. We infected primmorphs, cultured in vitro, with samples from diseased sponges and observed, by microscopy, disease symptoms, including loss of green symbionts, associated with mass die-off events. Subsequent sequencing of 16S rRNA gene fragments revealed that the microbiome community of healthy sponge and primmorphs formed a group separate from the community of diseased sponges and infected primmorphs. This confirms the suitability of the primmorph cell culture as a model sponge system. We also discovered mass mortality of green symbionts (Chlorophyta) was associated with a shift in the microbial communities of sponges/primmorphs. Microbes in diseased sponges, and infected primmorphs, belonged mainly to the phyla Bacteroidetes and Proteobacteria and these families Flavobacteriaceae, Burkholderiaceae, and Moraxellaceae. Primmorphs cell culture may provide a model to study interactions between these bacteria and their host and elucidate the cause of mass mortality events.

scholarly journals Microbiome analysis of healthy and diseased sponges Lubomirskia baicalensis by using cell cultures of primmorphs

2019 ◽  
Author(s):  
Lubov Chernogor ◽  
Elizabet Klimenko ◽  
Igor Khanaev ◽  
Sergei Belikov
Keyword(s):  
Cell Culture ◽  
Cell Cultures ◽  
Lake Baikal ◽  
Freshwater Sponges ◽  
Opportunistic Bacteria ◽  
Lubomirskia Baicalensis ◽  
Gene 16S Rrna ◽  
Sponge Disease ◽  
Pathogenic Agents

Background. Freshwater sponges (Demosponges, Lubomirskiidae) are dominated in the littoral zone Lake Baikal in the biomass of benthic organisms and represent complex consortia of many species of eukaryotes and prokaryotes. A distinctive feature of sponges from Lake Baikal is their ability to live in symbiosis with various kinds of chlorophyll containing microalgae. Recently there have been massive diseases and the death of freshwater sponges. The etiology and ecology of these events remain unknown. Purpose. The purpose of the research was to use cell culture of primmorphs in vitro to study the microbiomes of healthy and diseased sponges to show the transmission of pathogenic agents from diseased sponges to cell cultures. Methods. The cell culture of primmorphs sponge Lubomirskia baicalensis was used to study microbiome communities in diseased and sick sponges in comparison with healthy sponge with subsequent sequencing of gene 16S rRNA and analysis of changes in microbiomes. Results. Results this study were show that use of cell culture of primmorphs in vitro is equivale of healthy sponge. Microbial community of healthy sponge and primmorphs was grouped separately from the community of diseased sponges and infected primmorphs, which confirms the suitability the cell culture of primmorphs, as a model sponge system. We found the mass death of green symbionts (Chlorophyta) and a shift in the microbial communities of sponges/primmorphs, associated with increase in relative abundant of different phyla Bacteroidetes and Proteobacteria with dominated families Flavobacteriaceae and Burkholderiaceae, Moraxellaceae in diseased sponges and infected cell cultures of primmorphs. Conclusions. This approach allowed us, using the cell culture of primmorphs, to identify potential opportunistic bacteria that can work together, which possibly enhances their action. The primmorphs system described here is a powerful new model system for studying basic mechanisms of the development of sponge disease, which will be valuable in future studies.

scholarly journals Microbiome analysis of healthy and diseased sponges Lubomirskia baicalensis by using cell cultures of primmorphs

2019 ◽  
Author(s):  
Lubov Chernogor ◽  
Elizabet Klimenko ◽  
Igor Khanaev ◽  
Sergei Belikov
Keyword(s):  
Cell Culture ◽  
Cell Cultures ◽  
Lake Baikal ◽  
Freshwater Sponges ◽  
Opportunistic Bacteria ◽  
Lubomirskia Baicalensis ◽  
Gene 16S Rrna ◽  
Sponge Disease ◽  
Pathogenic Agents

Background. Freshwater sponges (Demosponges, Lubomirskiidae) are dominated in the littoral zone Lake Baikal in the biomass of benthic organisms and represent complex consortia of many species of eukaryotes and prokaryotes. A distinctive feature of sponges from Lake Baikal is their ability to live in symbiosis with various kinds of chlorophyll containing microalgae. Recently there have been massive diseases and the death of freshwater sponges. The etiology and ecology of these events remain unknown. Purpose. The purpose of the research was to use cell culture of primmorphs in vitro to study the microbiomes of healthy and diseased sponges to show the transmission of pathogenic agents from diseased sponges to cell cultures. Methods. The cell culture of primmorphs sponge Lubomirskia baicalensis was used to study microbiome communities in diseased and sick sponges in comparison with healthy sponge with subsequent sequencing of gene 16S rRNA and analysis of changes in microbiomes. Results. Results this study were show that use of cell culture of primmorphs in vitro is equivale of healthy sponge. Microbial community of healthy sponge and primmorphs was grouped separately from the community of diseased sponges and infected primmorphs, which confirms the suitability the cell culture of primmorphs, as a model sponge system. We found the mass death of green symbionts (Chlorophyta) and a shift in the microbial communities of sponges/primmorphs, associated with increase in relative abundant of different phyla Bacteroidetes and Proteobacteria with dominated families Flavobacteriaceae and Burkholderiaceae, Moraxellaceae in diseased sponges and infected cell cultures of primmorphs. Conclusions. This approach allowed us, using the cell culture of primmorphs, to identify potential opportunistic bacteria that can work together, which possibly enhances their action. The primmorphs system described here is a powerful new model system for studying basic mechanisms of the development of sponge disease, which will be valuable in future studies.

scholarly journals The influence of Janthinobacterium sp. strain SLB01 on the cell culture of primmorphs of the sponge Lubomirskia baicalensis

2021 ◽  
Author(s):  
Lubov I Chernogor ◽  
Marina G. Eliseikina ◽  
Ivan S Petrushin ◽  
Ekaterina A Chernogor ◽  
Igor V Khanaev ◽  
...  
Keyword(s):  
Cell Culture ◽  
Littoral Zone ◽  
Secretion System ◽  
Type Vi Secretion System ◽  
Bacterial Strains ◽  
Freshwater Sponges ◽  
Janthinobacterium Lividum ◽  
Type Vi Secretion ◽  
Lubomirskia Baicalensis

Sponges (phylum Porifera) are ancient, multicellular metazoans. Freshwater sponges (Demosponges, Lubomirskiidae) dominate the fauna of the littoral zone of Lake Baikal. Over the last years, there have been mass diseases and death of endemic sponges. Previously, the strain Janthinobacterium sp. SLB01 was isolated from the diseased sponge Lubomirskia baicalensis. The studies of the pathogenicity of the strain Janthinobacterium sp. SLB01 for Baikal sponges has not been carried out, therefore we infected experimentally in vitro to determine its pathogenicity by the cell culture of the primmorphs with subsequent isolation, sequencing, and analysis of the genomes. The purpose of the study is to show that the strain Janthinobacterium sp. SLB01 isolated from the diseased sponge L. baicalensis is a pathogen for the cell culture of primmorphs. The bacteria from the infected samples were isolated and identified as strain Janthinobacterium sp. PLB02. A comparative analysis of the genomes of the strains showed that they are practically identical. The genomes of both strains contain genes vioABCDE violacein, flok formation, and strong biofilm, and the type VI secretion system (T6SS), as the primary virulence factor. These bacterial strains based on a comparison of complete genomes showed similarity with strain Janthinobacterium lividum MTR. Isolated strains of Janthinobacterium sp. are pathogens for cell cultures of primmorphs and L. baicalensis sponges. The results of the study will help to expand the understanding of microbial relationships in the development of disease and the death of Baikal sponges.

Obtaining and Characterization of Alhagi persarum Boiss. et Buhse Callus Cell Cultures, Isoflavonoid Producers

2020 ◽  
Vol 36 (6) ◽  
pp. 35-48
Author(s):  
D.V. Коchkin ◽  
G.I. Sobolkovа ◽  
А.А. Fоmеnkov ◽  
R.А. Sidorov ◽  
А.М. Nоsоv
Keyword(s):  
Fatty Acids ◽  
Cell Culture ◽  
Liquid Chromatography ◽  
Secondary Metabolites ◽  
Cell Cultures ◽  
Mass Spectrometric ◽  
Mass Spectrometric Detection ◽  
Gas Liquid Chromatography ◽  
Callus Cell

The physiological characteristics of the callus cell cultures of Alhagi persarum Boiss et Buhse, a member of the legume family, widely used in folk medicine, have been studied. It was shown that the source of the explant was an important factor in the initiation of callusogenesis: more intense callusogenesis (almost 100%) was observed for explants from various organs of sterile seedlings, rather than intact plants (less than 30%). As a result, more than 20 lines of morphologically different callus cell cultures were obtained, and the growth parameters for the 5 most intensively growing lines were determined. The composition of fatty acids (FA) of total lipids and secondary metabolites in the most physiologically stable callus line Aр-207 was analyzed. Using capillary gas-liquid chromatography with mass spectrometric detection (GLC-MS), 19 individual C12--C24 FAs were identified, the main fraction of which were palmitic (~ 23%), stearic (~ 22%), linoleic (~ 14%) and α-linolenic (~ 33%) acids. The established atypical ratio of FAs (a simultaneous high content of both saturated FAs and polyunsaturated α-linolenic acid) is possibly due to the adaptation of cells to in vitro growth conditions. Phytochemical analysis of the secondary metabolites was carried out using ultra-performance liquid chromatography with electrospray ionization mass spectrometric detection (UPLC MS). Compounds belonging to different structural groups of isoflavones were found. Aglycones (calycosin, formononetin and afrormosin isomer), glucosides (formononetin glucoside), as well as esters of glucosides (malonylglycosides of calicosin, formononetin, afrormosin isomers, glycitein and genistein) were detected. These secondary metabolites are widespread in plants of the Fabaceae family; however, isoflavones are rare in representatives of the Alhagi genus. The presence of malonylated isoflavone glycosides in Alhagi spp. was shown for the first time. endemic plant species, Alhagi, in vitro cell culture, callus cell culture, isoflavones, fatty acids All studies were carried out using the equipment of the "Experimental Biotechnological Facility" and the "All-Russian Collection of Cell Cultures of Higher Plants" of IРР RAS. This work was supported by the Russian Foundation for Basic Research (RFBR), contract no.18-54-06021 (Az_a), and the Government of the Russian Federation, Megagrant Project no. 075-15-2019-1882.

scholarly journals THE PROLONGED GROWTH AND SURVIVAL OF OVARIAN TISSUE OF THE PROMETHEA MOTH (CALLOSAMIA PROMETHEA) IN VITRO

1958 ◽  
Vol 41 (5) ◽  
pp. 1027-1034 ◽  
Author(s):  
T. D. C. Grace
Keyword(s):  
Cell Culture ◽  
Cell Migration ◽  
Cell Cultures ◽  
Ovarian Tissue ◽  
Explant Culture ◽  
Growth And Survival ◽  
Live Tissue ◽  
Cell Divisions ◽  
Callosamia Promethea

1. The ovarian tissues from diapausing pupae of the promethea moth (Callosamia promethea) have survived and grown for 186 days under in vitro conditions. There was continual cell migration and multiplication for a period of 53 days, followed by a period of 47 days during which no cells migrated from the tissues. Between the 100th and 105th days after setting up the cultures, cell migration was resumed, and by the 111th day 250 cells were present in the medium. A few cell divisions were observed between the 126th and 136th days. After the tissues were subcultured on the 140th day, the explant culture continued to survive, but the cell culture died 3 days later. 2. The tissues were subcultured a total of 6 times during the 186 days. By the introduction of a piece of live tissue into the cell cultures, the growth and survival of the cells were increased from 8 days to about 20 days. 3. It is possible that the tissues had become adapted to the medium during their long survival, as the cells which migrated from them after 100 days showed considerably longer survival than those in earlier cultures.

scholarly journals Three-Dimensional Cell Cultures as an In Vitro Tool for Prostate Cancer Modeling and Drug Discovery

2020 ◽  
Vol 21 (18) ◽  
pp. 6806 ◽  
Author(s):  
Fabrizio Fontana ◽  
Michela Raimondi ◽  
Monica Marzagalli ◽  
Michele Sommariva ◽  
Nicoletta Gagliano ◽  
...  
Keyword(s):  
Prostate Cancer ◽  
Cell Culture ◽  
Drug Discovery ◽  
Cancer Cells ◽  
Cell Cultures ◽  
Antitumor Agents ◽  
Three Dimensional ◽  
3D Cell Culture ◽  
Cancer Modeling

In the last decade, three-dimensional (3D) cell culture technology has gained a lot of interest due to its ability to better recapitulate the in vivo organization and microenvironment of in vitro cultured cancer cells. In particular, 3D tumor models have demonstrated several different characteristics compared with traditional two-dimensional (2D) cultures and have provided an interesting link between the latter and animal experiments. Indeed, 3D cell cultures represent a useful platform for the identification of the biological features of cancer cells as well as for the screening of novel antitumor agents. The present review is aimed at summarizing the most common 3D cell culture methods and applications, with a focus on prostate cancer modeling and drug discovery.

Ratiometric Nanoviscometers: Applications for Measuring Cellular Physical Properties in 3D Cultures

2020 ◽  
Vol 25 (3) ◽  
pp. 234-246
Author(s):  
Charles McRae White ◽  
Mark A. Haidekker ◽  
William S. Kisaalita
Keyword(s):  
Cell Culture ◽  
Cell Cultures ◽  
Cell Biology ◽  
Low Cost ◽  
3D Cell Culture ◽  
Biomechanical Properties ◽  
Practical Applications ◽  
3D Cell Cultures

New insights into the biomechanical properties of cells are revealing the importance of these properties and how they relate to underlying molecular, architectural, and behavioral changes associated with cell state and disease processes. However, the current understanding of how these in vitro biomechanical properties are associated with in vivo processes has been developed based on the traditional monolayer (two-dimensional [2D]) cell culture, which traditionally has not translated well to the three-dimensional (3D) cell culture and in vivo function. Many gold standard methods and tools used to observe the biomechanical properties of 2D cell cultures cannot be used with 3D cell cultures. Fluorescent molecules can respond to external factors almost instantaneously and require relatively low-cost instrumentation. In this review, we provide the background on fluorescent molecular rotors, which are attractive tools due to the relationship of their emission quantum yield with environmental microviscosity. We make the case for their use in both 2D and 3D cell cultures and speculate on their fundamental and practical applications in cell biology.

BeO-OSL detectors for dose measurements in cell cultures

2009 ◽  
Vol 48 (06) ◽  
pp. 227-232
Author(s):  
D. Sommer ◽  
R. Freudenberg ◽  
U. Reichelt ◽  
J. Henniger ◽  
J. Kotzerke ◽  
...  
Keyword(s):  
Cell Culture ◽  
Monte Carlo Simulation ◽  
Monte Carlo ◽  
Cell Cultures ◽  
Rate Sensitivity ◽  
Culture Vessel ◽  
Qualitative Properties ◽  
Dose Profile ◽  
Ambient Lighting

Summary Aim: The absorbed dose is an important parameter in experiments involving irradiation of cells in vitro with unsealed radionuclides. Typically, this is estimated with a model calculation, although the results thus obtained cannot be verified. Generally used real-time measurement methods are not applicable in this setting. A new detector material with in vitro suitability is the subject of this work. Methods: Optically-stimulated luminescence (OSL) dosimeters based on beryllium oxide (BeO) were used for dose measurement in cell cultures exposed to unsealed radionuclides. Their qualitative properties (e. g. energy-dependent count rate sensitivity, fading, contamination by radioactive liquids) were determined and compared to the results of a Monte Carlo simulation (using AMOS software). OSL dosimeters were tested in common cell culture setups with a known geometry. Results: Dose reproducibility of the OSL dosimeters was ± 1.5%. Fading at room temperature was 0.07% per day. Dose loss (optically-stimulated deletion) under ambient lighting conditions was 0.5% per minute. The Monte Carlo simulation for the relative sensitivity at different beta energies provided corresponding results to those obtained with the OSL dosimeters. Dose profile measurements using a 6 well plate and 14 ml PP tube showed that the geometry of the cell culture vessel has a marked influence on dose distribution with 188Re. Conclusion: A new dosimeter system was calibrated with β-emitters of different energy. It turned out as suitable for measuring dose in liquids. The dose profile measurements obtained are suitably precise to be used as a check against theoretical dose calculations.

scholarly journals Cytogenetic analysis of rat pancreatic cell cultures at early passages

2016 ◽  
Vol 4 (1) ◽  
pp. 66-69
Author(s):  
V. Kovpak ◽  
O. Kovpak
Keyword(s):  
Cell Culture ◽  
Mitotic Index ◽  
Cell Cultures ◽  
Cytogenetic Analysis ◽  
Pancreatic Cell ◽  
Binucleated Cells ◽  
Treatment Of Diabetes ◽  
Cultivation In Vitro ◽  
Number Of Cells

Cell culture obtained from the pancreas can serve as a source of physiologically competent substitute for primary islets of Langerhans in the treatment of diabetes. However, it is possible to obtain the required number of cells only at long-term cultivation in vitro. Therefore, it is necessary to investigate the risks of neoplastic transformation of cells in vitro before transplantation.Materials and methods. Cell culture was obtained by explant method from pancreas of 12-day-old rats. Cell cultures of the first to sixth passages were used for the cytogenetic analysis. In this study the number of cells with altered karyotype, cells with micronuclei, binucleated cells and the cells in a state of apoptosis were considered, mitotic index was calculated.Results. Aneuploid cells were noted at all passages in an amount of 2.2 % (1st) to 16.6 % (4th). Polyploidy manifested in a population of cells from the second (1.1 %) to the sixth passage (4.4 %) with a maximum at passage four (7.8 %). A significant increase in their number was observed since the second passage (0.3 %). We have seen a significant increase in the number of binucleated cells from the first (0.1 %) to the sixth passage (0.8 %). During the study there was a decrease in mitotic index from the first (2.7 %), to the third passage (1.5 %) and its gradual increase in fourth (1.7 %) and sixth (2.0 %) passages. In addition, there was discovered a small percentage of cells in apoptosis, their number gradually increased to the 4th passage (0.5 %). The 5th-6th passages showed decrease in the number of apoptotic cells to 0.1 %.Conclusion. There have been revealed changes in the rat pancreatic cells culture as aneuploidies, polyploidies and micronuclei, the intensity of which varied depending on the passage. However, karyotype variability of mentioned cell did not exceed the level of spontaneous mutations characteristic of mammalians.

scholarly journals Genetic relationships of Corynebacterium diphtheriae strains isolated from a diphtheria case and carriers by restriction fragment length polymorphism of rRNA genes

1995 ◽  
Vol 37 (4) ◽  
pp. 291-296
Author(s):  
Claudio Tavares Sacchi ◽  
Ana Paula Silva de Lemos ◽  
Silvana Tadeu Casagrande ◽  
Alice Massumi Mori ◽  
Carmecy Lopes de Almeida
Keyword(s):  
Cell Culture ◽  
Genetic Relationships ◽  
Culture Method ◽  
Vero Cells ◽  
Corynebacterium Diphtheriae ◽  
Rrna Genes ◽  
Diffusion Method ◽  
Rrna Gene

In the present study we report the results of an analysis, based on ribotyping of Corynebacterium diphtheriae intermedius strains isolated from a 9 years old child with clinical diphtheria and his 5 contacts. Quantitative analysis of RFLPs of rRNA was used to determine relatedness of these 7 C.diphtheriae strains providing support data in the diphtheria epidemiology. We have also tested those strains for toxigenicity in vitro by using the Elek's gel diffusion method and in vivo by using cell culture method on cultured monkey kidney cell (VERO cells). The hybridization results revealed that the 5 C.diphtheriae strains isolated from contacts and one isolated from the clinical case (nose case strain) had identical RFLP patterns with all 4 restriction endonucleases used, ribotype B. The genetic distance from this ribotype and ribotype A (throat case strain), that we initially assumed to be responsible for the illness of the patient, was of 0.450 showing poor genetic correlation among these two ribotypes. We found no significant differences concerned to the toxin production by using the cell culture method. In conclusion, the use of RFLPs of rRNA gene was successful in detecting minor differences in closely related toxigenic C.diphtheriae intermedius strains and providing information about genetic relationships among them.

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