scholarly journals No evidence that crayfish carcasses produce detectable environmental DNA (eDNA) in a stream enclosure experiment

PeerJ ◽  
2020 ◽  
Vol 8 ◽  
pp. e9333 ◽  
Author(s):  
Amanda N. Curtis ◽  
Eric R. Larson

Environmental DNA (eDNA) is an emerging tool for monitoring invasive and imperiled species, particularly at low densities. However, the factors that control eDNA production, transport, and persistence in aquatic systems remain poorly understood. For example, the extent to which carcasses produce detectable eDNA is unknown. If positive detections are associated with dead organisms, this could confound monitoring for imperiled or invasive species. Here, we present results from one of the first studies to examine carcass eDNA in situ by deploying carcasses of the invasive red swamp crayfish (Procambarus clarkii) in a stream enclosure experiment for 28 days. We predicted that carcasses would initially produce eDNA that would decline over time as carcasses decayed. Unsurprisingly, crayfish carcasses lost biomass over time, but at the conclusion of our experiment much of the carapace and chelae remained. However, no eDNA of P. clarkii was detected in any of our samples at the crayfish density (15 P. clarkii carcasses at ∼615 g of biomass initially), stream flow (520–20,319 L/s), or temperature (∼14–25 °C) at our site. Subsequent analyses demonstrated that these results were not the consequence of PCR inhibition in our field samples, poor performance of the eDNA assay for intraspecific genetic diversity within P. clarkii, or due to the preservation and extraction procedure used. Therefore, our results suggest that when crayfish are relatively rare, such as in cases of new invasive populations or endangered species, carcasses may not produce detectable eDNA. In such scenarios, positive detections from field studies may be more confidently attributed to the presence of live organisms. We recommend that future studies should explore how biomass, flow, and differences in system (lentic vs. lotic) influence the ability to detect eDNA from carcasses.

Shore & Beach ◽  
2019 ◽  
pp. 3-14 ◽  
Author(s):  
Joshua Davis ◽  
Diana Mitsova ◽  
Tynon Briggs ◽  
Tiffany Briggs

Wave forcing from hurricanes, nor’easters, and energetic storms can cause erosion of the berm and beach face resulting in increased vulnerability of dunes and coastal infrastructure. LIDAR or other surveying techniques have quantified post-event morphology, but there is a lack of in situ hydrodynamic and morphodynamic measurements during extreme storm events. Two field studies were conducted in March 2018 and April 2019 at Bethany Beach, Delaware, where in situ hydrodynamic and morphodynamic measurements were made during a nor’easter (Nor’easter Riley) and an energetic storm (Easter Eve Storm). An array of sensors to measure water velocity, water depth, water elevation and bed elevation were mounted to scaffold pipes and deployed in a single cross-shore transect. Water velocity was measured using an electro-magnetic current meter while water and bed elevations were measured using an acoustic distance meter along with an algorithm to differentiate between the water and bed during swash processes. GPS profiles of the beach face were measured during every day-time low tide throughout the storm events. Both accretion and erosion were measured at different cross-shore positions and at different times during the storm events. Morphodynamic change along the back-beach was found to be related to berm erosion, suggesting an important morphologic feedback mechanism. Accumulated wave energy and wave energy flux per unit area between Nor’easter Riley and a recent mid-Atlantic hurricane (Hurricane Dorian) were calculated and compared. Coastal Observations: JALBTCX/NCMP emergency-response airborne Lidar coastal mapping & quick response data products for 2016/2017/2018 hurricane impact assessments


1998 ◽  
Vol 37 (2) ◽  
pp. 137-144 ◽  
Author(s):  
Elisa Garvey ◽  
John E. Tobiason ◽  
Michael Hayes ◽  
Evelyn Wolfram ◽  
David A. Reckhow ◽  
...  

This paper reports on field studies and model development aimed at understanding coliform fate and transport in the Quabbin Reservoir, an oligotrophic drinking water supply reservoir. An investigation of reservoir currents suggested the importance of wind driven phenomena, and that both lateral and vertical circulation patterns exist. In-situ experiments of coliform decay suggested dependence on light intensity and yielded an appropriate decay coefficient to be used in CE-QUAL-W2, a two-dimensional hydrodynamic and water quality model. Modeling confirmed the sensitivity of reservoir outlet concentration to vertical variability within the reservoir, meteorological conditions, and location of coliform source.


2020 ◽  
Vol 01 ◽  
Author(s):  
Henrik Jensen ◽  
Pernille D. Pedersen

Aims: To evaluate the real-life effect of photocatalytic surfaces on the air quality at two test-sites in Denmark. Background: Poor air quality is today one of the largest environmental issues, due to the adverse effects on human health associated with high levels of air pollution, including respiratory issues, cardiovascular disease (CVD), and lung cancer. NOx removal by TiO2 based photocatalysis is a tool to improve air quality locally in areas where people are exposed. Methods: Two test sites were constructed in Roskilde and Copenhage airport. In Roskilde, the existing asphalt at two parking lots was treated with TiO2 containing liquid and an in-situ ISO 22197-1 test setup was developed to enable in-situ evaluation of the activity of the asphalt. In CPH airport, photocatalytic concrete tiles were installed at the "kiss and fly" parking lot, and NOx levels were continuously monitored in 0.5 m by CLD at the active site and a comparable reference site before and after installation for a period of 2 years. Results: The Roskilde showed high stability of the photocatalytic coating with the activity being largely unchanged over a period of 2 years. The CPH airport study showed that the average NOx levels were decreased by 12 % comparing the before and after NOx concentrations at the active and reference site. Conclusion: The joined results of the two Danish demonstration projects illustrate a high stability of the photocatalytic coating as well as a high potential for improvements of the real-life air quality in polluted areas.


Water ◽  
2021 ◽  
Vol 13 (10) ◽  
pp. 1409
Author(s):  
Hamdhani Hamdhani ◽  
Drew E. Eppehimer ◽  
David Walker ◽  
Michael T. Bogan

Chlorophyll-a measurements are an important factor in the water quality monitoring of surface waters, especially for determining the trophic status and ecosystem management. However, a collection of field samples for extractive analysis in a laboratory may not fully represent the field conditions. Handheld fluorometers that can measure chlorophyll-a in situ are available, but their performance in waters with a variety of potential light-interfering substances has not yet been tested. We tested a handheld fluorometer for sensitivity to ambient light and turbidity and compared these findings with EPA Method 445.0 using water samples obtained from two urban lakes in Tucson, Arizona, USA. Our results suggested that the probe was not sensitive to ambient light and performed well at low chlorophyll-a concentrations (<25 µg/L) across a range of turbidity levels (50–70 NTU). However, the performance was lower when the chlorophyll-a concentrations were >25 µg/L and turbidity levels were <50 NTU. To account for this discrepancy, we developed a calibration equation to use for this handheld fluorometer when field monitoring for potential harmful algal blooms in water bodies.


2021 ◽  
Vol 13 (3) ◽  
pp. 1505
Author(s):  
Ignacio Menéndez Pidal ◽  
Jose Antonio Mancebo Piqueras ◽  
Eugenio Sanz Pérez ◽  
Clemente Sáenz Sanz

Many of the large number of underground works constructed or under construction in recent years are in unfavorable terrains facing unusual situations and construction conditions. This is the case of the subject under study in this paper: a tunnel excavated in evaporitic rocks that experienced significant karstification problems very quickly over time. As a result of this situation, the causes that may underlie this rapid karstification are investigated and a novel methodology is presented in civil engineering where the use of saturation indices for the different mineral specimens present has been crucial. The drainage of the rock massif of El Regajal (Madrid-Toledo, Spain, in the Madrid-Valencia high-speed train line) was studied and permitted the in-situ study of the hydrogeochemical evolution of water flow in the Miocene evaporitic materials of the Tajo Basin as a full-scale testing laboratory, that are conforms as a whole, a single aquifer. The work provides a novel methodology based on the calculation of activities through the hydrogeochemical study of water samples in different piezometers, estimating the saturation index of different saline materials and the dissolution capacity of the brine, which is surprisingly very high despite the high electrical conductivity. The circulating brine appears unsaturated with respect to thenardite, mirabilite, epsomite, glauberite, and halite. The alteration of the underground flow and the consequent renewal of the water of the aquifer by the infiltration water of rain and irrigation is the cause of the hydrogeochemical imbalance and the modification of the characteristics of the massif. These modifications include very important loss of material by dissolution, altering the resistance of the terrain and the increase of the porosity. Simultaneously, different expansive and recrystallization processes that decrease the porosity of the massif were identified in the present work. The hydrogeochemical study allows the evolution of these phenomena to be followed over time, and this, in turn, may facilitate the implementation of preventive works in civil engineering.


Plant Disease ◽  
2014 ◽  
Vol 98 (4) ◽  
pp. 551-558 ◽  
Author(s):  
G. A. Ridge ◽  
S. N. Jeffers ◽  
W. C. Bridges ◽  
S. A. White

The goal of this study was to develop a procedure that could be used to evaluate the potential susceptibility of aquatic plants used in constructed wetlands to species of Phytophthora commonly found in nurseries. V8 agar plugs from actively growing cultures of three or four isolates of Phytophthora cinnamomi, P. citrophthora, P. cryptogea, P. nicotianae, and P. palmivora were used to produce inocula. In a laboratory experiment, plugs were placed in plastic cups and covered with 1.5% nonsterile soil extract solution (SES) for 29 days, and zoospore presence and activity in the solution were monitored at 2- or 3-day intervals with a rhododendron leaf disk baiting bioassay. In a greenhouse experiment, plugs of each species of Phytophthora were placed in plastic pots and covered with either SES or Milli-Q water for 13 days during both summer and winter months, and zoospore presence in the solutions were monitored at 3-day intervals with the baiting bioassay and by filtration. Zoospores were present in solutions throughout the 29-day and 13-day experimental periods but consistency of zoospore release varied by species. In the laboratory experiment, colonization of leaf baits decreased over time for some species and often varied among isolates within a species. In the greenhouse experiment, bait colonization decreased over time in both summer and winter, varied among species of Phytophthora in the winter, and was better in Milli-Q water. Zoospore densities in solutions were greater in the summer than in the winter. Decreased zoospore activities for some species of Phytophthora were associated with prolonged temperatures below 13 or above 30°C in the greenhouse. Zoospores from plugs were released consistently in aqueous solutions for at least 13 days. This procedure can be used to provide in situ inocula for the five species of Phytophthora used in this study so that aquatic plant species can be evaluated for potential susceptibility.


2021 ◽  
Vol 13 (9) ◽  
pp. 1846
Author(s):  
Vivek Kumar ◽  
Isabel M. Morris ◽  
Santiago A. Lopez ◽  
Branko Glisic

Estimating variations in material properties over space and time is essential for the purposes of structural health monitoring (SHM), mandated inspection, and insurance of civil infrastructure. Properties such as compressive strength evolve over time and are reflective of the overall condition of the aging infrastructure. Concrete structures pose an additional challenge due to the inherent spatial variability of material properties over large length scales. In recent years, nondestructive approaches such as rebound hammer and ultrasonic velocity have been used to determine the in situ material properties of concrete with a focus on the compressive strength. However, these methods require personnel expertise, careful data collection, and high investment. This paper presents a novel approach using ground penetrating radar (GPR) to estimate the variability of in situ material properties over time and space for assessment of concrete bridges. The results show that attributes (or features) of the GPR data such as raw average amplitudes can be used to identify differences in compressive strength across the deck of a concrete bridge. Attributes such as instantaneous amplitudes and intensity of reflected waves are useful in predicting the material properties such as compressive strength, porosity, and density. For compressive strength, one alternative approach of the Maturity Index (MI) was used to estimate the present values and compare with GPR estimated values. The results show that GPR attributes could be successfully used for identifying spatial and temporal variation of concrete properties. Finally, discussions are presented regarding their suitability and limitations for field applications.


2014 ◽  
Vol 44 (1) ◽  
pp. 104-127 ◽  
Author(s):  
Michael Schwendeman ◽  
Jim Thomson ◽  
Johannes R. Gemmrich

Abstract Coupled in situ and remote sensing measurements of young, strongly forced wind waves are applied to assess the role of breaking in an evolving wave field. In situ measurements of turbulent energy dissipation from wave-following Surface Wave Instrument Float with Tracking (SWIFT) drifters and a tethered acoustic Doppler sonar system are consistent with wave evolution and wind input (as estimated using the radiative transfer equation). The Phillips breaking crest distribution Λ(c) is calculated using stabilized shipboard video recordings and the Fourier-based method of Thomson and Jessup, with minor modifications. The resulting Λ(c) are unimodal distributions centered around half of the phase speed of the dominant waves, consistent with several recent studies. Breaking rates from Λ(c) increase with slope, similar to in situ dissipation. However, comparison of the breaking rate estimates from the shipboard video recordings with the SWIFT video recordings show that the breaking rate is likely underestimated in the shipboard video when wave conditions are calmer and breaking crests are small. The breaking strength parameter b is calculated by comparison of the fifth moment of Λ(c) with the measured dissipation rates. Neglecting recordings with inconsistent breaking rates, the resulting b data do not display any clear trends and are in the range of other reported values. The Λ(c) distributions are compared with the Phillips equilibrium range prediction and previous laboratory and field studies, leading to the identification of several inconsistencies.


2005 ◽  
Vol 61 (5) ◽  
pp. 835-843 ◽  
Author(s):  
Hiroshi Ishida ◽  
Yuji Watanabe ◽  
Tatsuo Fukuhara ◽  
Sho Kaneko ◽  
Kazushi Furusawa ◽  
...  

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