diffusion waves
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2021 ◽  
Author(s):  
Ze Gong ◽  
Koen van den Dries ◽  
Alessandra Cambi ◽  
Vivek Shenoy

Immune cells, such as macrophages and dendritic cells, can utilize podosomes, actin-rich protrusions, to generate forces, migrate, and patrol for foreign antigens. In these cells, individual podosomes exhibit periodic protrusion and retraction cycles (vertical oscillations) to probe their microenvironment, while multiple podosomes arranged in clusters demonstrate coordinated wave-like spatiotemporal dynamics. However, the mechanisms governing both the individual vertical oscillations and the coordinated oscillation waves in clusters remain unclear. By integrating actin polymerization, myosin contractility, actin diffusion, and mechanosensitive signaling, we develop a chemo-mechanical model for both the oscillatory growth of individual podosomes and wave-like dynamics in clusters. Our model reveals that podosomes show oscillatory growth when the actin polymerization-associated protrusion and the signaling-associated myosin contraction occur at similar rates, while the diffusion of actin monomers within the cluster drives mesoscale coordination of individual podosome oscillations in an apparent wave-like fashion. Our model predicts the influence of different pharmacological treatments targeting myosin activity, actin polymerization, and mechanosensitive pathways, as well as the impact of the microenvironment stiffness on the wavelengths, frequencies, and speeds of the chemo-mechanical waves. Overall, our integrated theoretical and experimental approach reveals how collective wave dynamics arise due to the coupling between chemo-mechanical signaling and actin diffusion, shedding light on the role of podosomes in immune cell mechanosensing within the context of wound healing and cancer immunotherapy.


Author(s):  
Robert R. Parmenter ◽  
Gregory E. Glass

Hantavirus outbreaks in the American Southwest are hypothesized to be driven by episodic seasonal events of high precipitation, promoting rapid increases in virus-reservoir rodent species that then move across the landscape from high quality montane forested habitats (refugia), eventually over-running human residences and increasing disease risk. In this study, the velocities of rodents and virus diffusion wave propagation and retraction were documented and quantified in the sky-islands of northern New Mexico and related to rodent-virus relationships in refugia versus nonrefugia habitats. Deer mouse (Peromyscus maniculatus) refugia populations exhibited higher Sin Nombre Virus (SNV) infection prevalence than nonrefugia populations. The velocity of propagating diffusion waves of Peromyscus from montane to lower grassland habitats was measured at [Formula: see text] m/day (SE), with wave retraction velocities of [Formula: see text] m/day. SNV infection diffusion wave propagation velocity within a deer mouse population averaged [Formula: see text] m/day, with a faster retraction wave velocity of [Formula: see text] m/day. A spatio-temporal analysis of human Hantavirus Pulmonary Syndrome (HPS) cases during the initial 1993 epidemic revealed a positive linear relationship between the time during the epidemic and the distance of human cases from the nearest deer mouse refugium, with a landscape diffusion wave velocity of [Formula: see text] m/day ([Formula: see text]). These consistent diffusion propagation wave velocity results support the traveling wave component of the HPS outbreak theory and can provide information on space–time constraints for future outbreak forecasts.


2021 ◽  
Vol 28 (9) ◽  
pp. 092112
Author(s):  
S. Karbashewski ◽  
R. D. Sydora ◽  
B. Van Compernolle ◽  
M. J. Poulos

Solid Earth ◽  
2021 ◽  
Vol 12 (8) ◽  
pp. 1829-1849
Author(s):  
Klaus Regenauer-Lieb ◽  
Manman Hu ◽  
Christoph Schrank ◽  
Xiao Chen ◽  
Santiago Peña Clavijo ◽  
...  

Abstract. Theoretical approaches to earthquake instabilities propose shear-dominated source mechanisms. Here we take a fresh look at the role of possible volumetric instabilities preceding a shear instability. We investigate the phenomena that may prepare earthquake instabilities using the coupling of thermo-hydro-mechano-chemical reaction–diffusion equations in a THMC diffusion matrix. We show that the off-diagonal cross-diffusivities can give rise to a new class of waves known as cross-diffusion or quasi-soliton waves. Their unique property is that for critical conditions cross-diffusion waves can funnel wave energy into a stationary wave focus from large to small scale. We show that the rich solution space of the reaction–cross-diffusion approach to earthquake instabilities can recover classical Turing instabilities (periodic in space instabilities), Hopf bifurcations (spring-slider-like earthquake models), and a new class of quasi-soliton waves. Only the quasi-soliton waves can lead to extreme focussing of the wave energy into short-wavelength instabilities of short duration. The equivalent extreme event in ocean waves and optical fibres leads to the appearance of “rogue waves” and high energy pulses of light in photonics. In the context of hydromechanical coupling, a rogue wave would appear as a sudden fluid pressure spike. This spike is likely to cause unstable slip on a pre-existing (near-critically stressed) fault acting as a trigger for the ultimate (shear) seismic moment release.


2021 ◽  
Author(s):  
Qingpei Sun ◽  
Manman Hu ◽  
Christoph Eckart Schrank ◽  
Klaus Regenauer- Lieb

2021 ◽  
Vol 18 (02) ◽  
pp. 453-492
Author(s):  
Shogo Taniue ◽  
Shuichi Kawashima

We study symmetric hyperbolic systems with memory-type dissipation and investigate their dissipative structures under Craftsmanship condition. We treat two cases: memory-type diffusion and memory-type relaxation, and observe that the dissipative structures of these two cases are essentially different. Namely, we show that the dissipative structure of the system with memory-type diffusion is of the standard type, while that of the system with memory-type relaxation is of the regularity-loss type. Moreover, we investigate the asymptotic profiles of the solutions for [Formula: see text]. In the diffusion case, it is proved that the systems with memory and without memory have the same asymptotic profile for [Formula: see text], which is given by the superposition of linear diffusion waves. We have the same result also in the relaxation case under enough regularity assumption on the initial data.


2021 ◽  
Author(s):  
Qingpei Sun ◽  
Manman Hu ◽  
Christoph Eckart Schrank ◽  
Klaus Regenauer- Lieb

2021 ◽  
Vol 887 ◽  
pp. 165-171
Author(s):  
A.A. Arutyunyants ◽  
N.A. Salamova

The electrochemical behavior of 8-oxyquinoline and chelate complexes based on it (Sn (Oxin)Cl3, Ge (Oxin)Cl3, Ti (Oxin)Cl3, W(Oxin)2Cl4, Fe (Oxin)Br, Sb (Oxin)Cl2, Sb (Oxin)Cl4, Sn (Oxin)2Cl2, Ti (Oxin)2Cl2 have been studied by cyclic voltammetry in aprotic solvents in a three-electrode system on platinum and glass-graphite disk electrodes. It has been shown that in the case of metal oxyquinolinates, the ligand is 8-oxyquinoline reducing in two one-electron diffusion waves. The first wave is observed at less negative potentials than the first quinoline one, while the second waves have almost the same potentials. The first wave is related to the OH- proton discharge. The complexes under study are electrolytically oxidizable. A single two-electron peak is observed in the cyclic voltammogram in the anodic region for the Ti (Oxin)Cl3 chelate complex. This is probably associated with two irreversible sequential or parallel stages with close oxidation potentials. By analogy to the processes considered for 8-oxyquinoline, the rupture of the oxygen-metal bond is observed at the first stage. The resulting radical cation is unstable and decomposes into a radical and a cation with a positive charge in the titanium atom. Electrolytic oxidation of complexes Fe (Oxin)Br, Sb (Oxin)Cl2, Sb (Oxin)Cl4, and Sn (Oxin)2Cl2 is similar to that of Ti (Oxin)Cl3.


Solid Earth ◽  
2021 ◽  
Vol 12 (4) ◽  
pp. 869-883
Author(s):  
Klaus Regenauer-Lieb ◽  
Manman Hu ◽  
Christoph Schrank ◽  
Xiao Chen ◽  
Santiago Peña Clavijo ◽  
...  

Abstract. We propose a multiscale approach for coupling multi-physics processes across the scales. The physics is based on discrete phenomena, triggered by local thermo-hydro-mechano-chemical (THMC) instabilities, that cause cross-diffusion (quasi-soliton) acceleration waves. These waves nucleate when the overall stress field is incompatible with accelerations from local feedbacks of generalized THMC thermodynamic forces that trigger generalized thermodynamic fluxes of another kind. Cross-diffusion terms in the 4×4 THMC diffusion matrix are shown to lead to multiple diffusional P and S wave equations as coupled THMC solutions. Uncertainties in the location of meso-scale material instabilities are captured by a wave-scale correlation of probability amplitudes. Cross-diffusional waves have unusual dispersion patterns and, although they assume a solitary state, do not behave like solitons but show complex interactions when they collide. Their characteristic wavenumber and constant speed define mesoscopic internal material time–space relations entirely defined by the coefficients of the coupled THMC reaction–cross-diffusion equations. A companion paper proposes an application of the theory to earthquakes showing that excitation waves triggered by local reactions can, through an extreme effect of a cross-diffusional wave operator, lead to an energy cascade connecting large and small scales and cause solid-state turbulence.


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