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2021 ◽  
Vol 56 (4) ◽  
pp. 255-262
Author(s):  
U Habiba ◽  
A Alam ◽  
S Rahman ◽  
SUD Shamim ◽  
AA Piya

Paracetamol is a very popular medication used to treat pain and fever. IR spectra of paracetamol have been measured for powder crystals. Ab initio calculations of its equilibrium geometry and vibrational spectra were carried out for spectrum interpretation. Differences between the experimental IR spectra of crystalline samples have been analyzed. Variations of molecular structure from the isolated state to molecular crystal were estimated based on the difference between the optimized molecular parameters of free molecules and the experimental bond lengths and angles evaluated for the crystal forms of the title compounds. The role of hydrogen bonds in the structure of molecular crystals of paracetamol is investigated. Bangladesh J. Sci. Ind. Res.56(4), 255-262, 2021


2021 ◽  
Vol 8 (03) ◽  
pp. e122-e130
Author(s):  
Jean Paul Dzoyem ◽  
Nathalie Boulens ◽  
Eric Allémann ◽  
Florence Delie

AbstractThis study aimed at preparing and characterizing thymol, eugenol, and piperine-loaded poly(D,L-lactic-co-glycolic acid) nanoparticles and evaluating the effect on inflammatory mediators secretion and apoptosis in Raw 264.7 macrophage cells. Nanoparticles were produced by the solvent evaporation technique. Dynamic light scattering and scanning electron microscopy were used to study the physicochemical characteristics. Raw 264.7 macrophage cells were used as a model for in vitro assays. The 2-(4-iodophenyl)-3-(4-nitrophenyl)-5-(2,4-disulfophenyl)-2H-tetrazolium assay was used to determine the cytotoxicity of the formulated nanoparticles. An annexin V apoptosis detection kit was used to assess apoptosis. Nitric oxide production was determined using the Griess reagent, and the inflammatory mediators level was evaluated with Th1/Th2 cytokine and fluorometric cyclooxygenase kits. The loaded nanoparticles showed a particle size around 190 nm with a low polydispersity between 0.069 and 0.104 and a zeta potential between–1.2 and–9.5 mV. Reduced cytotoxicity of nanoparticles compared to free molecules against Raw 264.7 macrophage cells was observed and seemed to occur through a mechanism associated with apoptosis. A decrease in cyclooxygenase enzyme activity with an increasing concentration was observed. Both free molecules and nanoparticles showed their capacity to modulate the inflammatory process mostly by inhibiting the investigated inflammatory cytokines. The data presented in this study indicate that thymol and piperine-loaded poly(D,L-lactic-co-glycolic acid nanoparticles could serve as a novel anti-inflammatory colloidal drug delivery system with reduced toxicity. However, further study should be considered to optimize the formulation’s loading capacity and thereby probably enhance their bioactivity in treating inflammatory diseases.


2021 ◽  
pp. 107385842110271
Author(s):  
Juan P. Cata ◽  
Megan L. Uhelski ◽  
Aysegul Gorur ◽  
Patrick M. Dougherty

The interchange of information from one cell to another relies on the release of hundreds of different molecules including small peptides, amino acids, nucleotides, RNA, steroids, retinoids, or fatty acid metabolites. Many of them are released to the extracellular matrix as free molecules and others can be part of the cargo of cellular vesicles. Small extracellular vesicles (30–150 nm), also known as exosomes, are a known mechanism of cell-to-cell communication in the nervous system. Exosomes participate in the pathogenesis of several neurological conditions including Alzheimer’s and Parkinson’s disease. However, exciting emerging evidence demonstrates that exosomes also regulate mechanisms of the sensory process including nociception. The goal of this review is to summarize the literature on exosome biogenesis, methods of small vesicle isolation and purification, and their role in nociception. We also provide insights on the potential applications of exosomes as pain biomarkers or as novel therapeutics.


Biomolecules ◽  
2021 ◽  
Vol 11 (5) ◽  
pp. 739
Author(s):  
Giulia Paiardi ◽  
Maria Milanesi ◽  
Rebecca C. Wade ◽  
Pasqualina D’Ursi ◽  
Marco Rusnati

Glycosaminoglycans (GAGs) are linear polysaccharides. In proteoglycans (PGs), they are attached to a core protein. GAGs and PGs can be found as free molecules, associated with the extracellular matrix or expressed on the cell membrane. They play a role in the regulation of a wide array of physiological and pathological processes by binding to different proteins, thus modulating their structure and function, and their concentration and availability in the microenvironment. Unfortunately, the enormous structural diversity of GAGs/PGs has hampered the development of dedicated analytical technologies and experimental models. Similarly, computational approaches (in particular, molecular modeling, docking and dynamics simulations) have not been fully exploited in glycobiology, despite their potential to demystify the complexity of GAGs/PGs at a structural and functional level. Here, we review the state-of-the art of computational approaches to studying GAGs/PGs with the aim of pointing out the “bitter” and “sweet” aspects of this field of research. Furthermore, we attempt to bridge the gap between bioinformatics and glycobiology, which have so far been kept apart by conceptual and technical differences. For this purpose, we provide computational scientists and glycobiologists with the fundamentals of these two fields of research, with the aim of creating opportunities for their combined exploitation, and thereby contributing to a substantial improvement in scientific knowledge.


2021 ◽  
Vol 12 (9) ◽  
pp. 2385-2393
Author(s):  
Sebastian Hartweg ◽  
Gustavo A. Garcia ◽  
Dušan K. Božanić ◽  
Laurent Nahon
Keyword(s):  

Author(s):  
Дмитрий Александрович Мачнев ◽  
Игорь Владимирович Нечаев ◽  
Александр Викторович Введенский ◽  
Олег Александрович Козадеров

Эндофуллерены, содержащие один или несколько атомов металла внутри углеродного каркаса (металлофуллерены), представляют большой практический интерес в связи с возможностью создания на их основе эффективных контрастирующих агентов для магнитно-резонансной томографии (МРТ), антиоксидантных и противораковых средств. Данные соединения могут быть также использованы в спинтронике для создания наноразмерных электронных устройств. В настоящей работе в рамках теории функционала плотности произведен расчет структурных, электронных и термодинамических характеристик эндофуллеренов металлов подгруппы скандия с числом инкапсулированных атомов от одного до семи в газовой фазе. Описаны стабильные структуры с симметриямиCs, C2, C3 и Ci, соответствующие позициям, занимаемым атомами металла внутри каркаса фуллерена. Установлен теоретический предел числа атомов металла, при котором структура эндофуллерена сохраняет устойчивость – шесть атомов для скандия, четыре для иттрия и три для лантана. Расчет показывает, что наиболее устойчивыми являются структуры с двумя и тремя инкапсулированными атомами. Описана зависимость между числом инкапсулированных атомов металла и характером распределения электронной плотности. Общий заряд на инкапсулированном металлическом кластере положителен для соединений Me@C60 – Me3@C60, слабо положителен для Me4@C60(отдельные атомы имеют отрицательный заряд) и отрицателен для соединений Me5C60 – Me6@C60. Описан эффект спиновой утечки для структур с основным дублетным спиновым состоянием. Для соединений с тремя и более инкапсулированными атомами данный эффект незначителен, что указывает на нецелесообразность создания контрастирующих агентов для МРТ на их основе.         ЛИТЕРАТУРА 1. Kroto H. W., Heath J. R., O’Brien S. C., Curl R. F., Smalley R. E. C60: Buckminsterfullerene. Nature.1985;318(6042): 162–163. DOI: https://doi.org/10.1038/318162a02. Kratschmer W., Lamb L. D., Fostiropoulos K., Huffman D. R. Solid C60: a new form of carbon. Nature.1990;347(6291): 354–358. DOI: https://doi.org/10.1038/347354a03. Buchachenko A. L. Compressed atoms. J. Phys. Chem. B. 2001;105(25): 5839–5846. DOI: https://doi.org/10.1021/jp003852u4. Koltover V. K., Bubnov V. P., Estrin Y. I., Lodygina V. P., Davydov R. M., Subramoni M., Manoharan P. T.Spin-transfer complexesofendohedralmetallofullerenes: ENDOR and NMR evidences. Phys. Chem. Chem. Phys. 2003;5(13): 2774–2777. DOI:https://doi.org/10.1039/b302917d5. Raebiger J. W., Bolskar R. D. Improved production and separation processes for gadoliniummetallofullerenes. J. Phys. Chem. C. 2008;112(17): 6605–6612. DOI:  https://doi.org/10.1021/jp076437b6. Gaussian 09, Revision D.01. M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb,J. R. Cheeseman, G. Scalmani, V. Barone, G. A. Petersson, H. Nakatsuji, X. Li, M. Caricato, A. Marenich, J. Bloino,B. G. Janesko, R. Gomperts, B. Mennucci, H. P. Hratchian, J. V. Ortiz, A. F. Izmaylov, J. L. Sonnenberg, D. Williams-Young, F. Ding, F. Lipparini, F. Egidi, J. Goings, B. Peng, A. Petrone, T. Henderson, D. Ranasinghe, V. G. Zakrzewski,J. Gao, N. Rega, G. Zheng, W. Liang, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida,T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven,K. Throssell, J. A. Montgomery, Jr., J. E. Peralta,F. Ogliaro, M. Bearpark, J. J. Heyd, E. Brothers, K. N. Kudin, V. N. Staroverov, T. Keith, R. Kobayashi,J. Normand, K. Raghavachari, A. Rendell, J. C. Burant, S. S. Iyengar, J. Tomasi, M. Cossi, J. M. Millam, M. Klene,C. Adamo, R. Cammi, J. W. Ochterski, R. L. Martin, K. Morokuma, O. Farkas, J. B. Foresman, and D. J. Fox,Gaussian, Inc., Wallingford CT, 2016. Available at: http://gaussian.com/g09citation7. Neese F. The ORCA program system. WIREs Computational Molecular Science. 2012;2(1): 73–78.DOI: https://doi.org/10.1002/wcms.818. Laikov D. N., Ustynyuk Y. A. PRIRODA-04: a quantum-chemical program suite. New possibilitiesin the study of molecular systems with the application of parallel computing. Russian Chemical Bulletin.2005;54(3): 820–826. DOI: https://doi.org/10.1007/s11172-005-0329-x9. Chandrasekharaiah M. S., Gingerich K. A. Chapter 86 Thermodynamic properties of gaseousspecies. In: Handbook on the Physics and Chemistry of Rare Earths. 1989;12: 409–431. DOI: https://doi.org/10.1016/s0168-1273(89)12010-810. Kohl F. J., Stearns C. A. Vaporization thermodynamics of yttrium dicarbide–carbon systemand dissociation energy of yttrium dicarbide and tetracarbide. J. Chem. Phys., 1970;52(12): 6310–6315.DOI: https://doi.org/10.1063/1.167294211. Gingerich K. A., Nappi B. N., Pelino M., Haque R. Stability of complex dilanthanum carbide molecules.Inorganica Chimica Acta. 1981;54: L141–L142. DOI: https://doi.org/10.1016/s0020-1693(00)95414-812. Hedberg K., Hedberg L., Bethune D. S., Brown C. A., Dorn H. C., Johnson R. D., de Vries M. S.Bond lengths in free molecules of buckminsterfullerene, C60, from gas-phase electron diffraction.Science. 1991;254(5030): 410–412. DOI: https://doi.org/10.1126/science.254.5030.41013. Bethune D. S., Meijer G., Tang W. C., Rosen H. J., Golden W. G., Seki H., Brown C. F., de Vries M. S.Vibrational Raman and infrared spectra of chromatographically separated C60 and C70 fullereneclusters Chem. Phys. Lett., 1991; 179(1–2): 181–186.DOI: https://doi.org/10.1016/0009-2614(91)90312-w14. Эмсли Дж. Элементы. М.: Мир; 1993. 256 c.15. Раков Э. Г. Нанотрубки и фуллерены. Учебн. пособие. М.: Логос; 2006. 376 с.16. Елецкий А. В., Смирнов В. М. Фуллерены. Успехи физических наук.1993;2: 33–60. Режим доступа: https://ufn.ru/ru/articles/1993/2/b/


2020 ◽  
Vol 7 (3) ◽  
pp. 034102 ◽  
Author(s):  
Lingyu Ma ◽  
Haiwang Yong ◽  
Joseph D. Geiser ◽  
Andrés Moreno Carrascosa ◽  
Nathan Goff ◽  
...  

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