Molecular Segmentation of the Spinal Trigeminal Nucleus in the Adult Mouse Brain

The trigeminal column is a hindbrain structure formed by second order sensory neurons that receive afferences from trigeminal primary (ganglionic) nerve fibers. Classical studies subdivide it into the principal sensory trigeminal nucleus located next to the pontine nerve root, and the spinal trigeminal nucleus which in turn consists of oral, interpolar and caudal subnuclei. On the other hand, according to the prosomeric model, this column would be subdivided into segmental units derived from respective rhombomeres. Experimental studies have mapped the principal sensory trigeminal nucleus to pontine rhombomeres (r) r2-r3 in the mouse. The spinal trigeminal nucleus emerges as a plurisegmental formation covering several rhombomeres (r4 to r11 in mice) across pontine, retropontine and medullary hindbrain regions. In the present work we reexamined the issue of rhombomeric vs. classical subdivisions of this column. To this end, we analyzed its subdivisions in an AZIN2-lacZ transgenic mouse, known as a reference model for hindbrain topography, together with transgenic reporter lines for trigeminal fibers. We screened as well for genes differentially expressed along the axial dimension of this structure in the adult and juvenile mouse brain. This analysis yielded genes from multiple functional families that display transverse domains fitting the mentioned rhombomeric map. The spinal trigeminal nucleus thus represents a plurisegmental structure with a series of distinct neuromeric units having unique combinatorial molecular profiles.

STORM imaging reveals the spatial arrangement of transition zone components and IFT particles at the ciliary base in Tetrahymena

The base of the cilium comprising the transition zone (TZ) and transition fibers (TF) acts as a selecting gate to regulate the intraflagellar transport (IFT)-dependent trafficking of proteins to and from cilia. Before entering the ciliary compartment, IFT complexes and transported cargoes accumulate at or near the base of the cilium. The spatial organization of IFT proteins at the cilia base is key for understanding cilia formation and function. Using stochastic optical reconstruction microscopy (STORM) and computational averaging, we show that seven TZ, nine IFT, three Bardet–Biedl syndrome (BBS), and one centrosomal protein, form 9-clustered rings at the cilium base of a ciliate Tetrahymena thermophila. In the axial dimension, analyzed TZ proteins localize to a narrow region of about 30 nm while IFT proteins dock approximately 80 nm proximal to TZ. Moreover, the IFT-A subcomplex is positioned peripheral to the IFT-B subcomplex and the investigated BBS proteins localize near the ciliary membrane. The positioning of the HA-tagged N- and C-termini of the selected proteins enabled the prediction of the spatial orientation of protein particles and likely cargo interaction sites. Based on the obtained data, we built a comprehensive 3D-model showing the arrangement of the investigated ciliary proteins.

Experimental Study on Bearing Characteristics and Soil Deformation of Necking Pile with Cap Using Transparent Soils Technology

This paper will employ the transparent soil experiment technology to explore the influences of shallow necking on the vertical bearing capacity of single pile with cap. Model experiment is carried out on one intact pile and nine shallow necking piles. The load-settlement curves of all piles are obtained, which are used to study bearing characteristics of piles. The displacement fields of soil around piles are employed to investigate the reasons for the loss of vertical bearing capacity of piles with shallow necking. The vertical bearing capacity is greatly reduced which is caused by shallow necking. When the axial dimension of necking is the same, the larger the radial size is, the greater the loss of vertical bearing capacity is. When the radial dimension of necking is the same, the greater the axial size is, the greater the loss of vertical bearing capacity is. The soil near the pile shaft and under the pile cap produces a large area of vertical downward deformation, which causes the relative displacement between the pile shaft and the soil to greatly reduce. Therefore, it is easy that the necking piles with caps develop negative friction, which causes the vertical bearing capacity of piles to reduce. When the radial dimension of the shallow necking is 80% of pile diameter, the pile is easy to be damaged.

Corneal proteome and differentially expressed corneal proteins in highly myopic chicks using a label-free SWATH-MS quantification approach

Myopia, or short-sightedness, is a highly prevalent refractive disorder in which the eye’s focal length is too short for its axial dimension in its relaxed state. High myopia is associated with increased risks of blinding ocular complications and abnormal eye shape. In addition to consistent findings on posterior segment anomalies in high myopia (e.g., scleral remodeling), more recent biometric and biomechanical data in myopic humans and animal models also indicate anterior segment anomalies (e.g., corneal biomechanical properties). Because the cornea is the anterior-most ocular tissue, providing essential refractive power and physiological stability, it is important to understand the biochemical signaling pathway during myopia development. This study first aimed to establish the entire chicken corneal proteome. Then, using the classical form deprivation paradigm to induce high myopia in chicks, state-of-the-art bioinformatics technologies were applied to identify eight differentially expressed proteins in the highly myopic cornea. These results provide strong foundation for future corneal research, especially those using chicken as an animal model for myopia development.

High Accuracy of Digital Tomosynthesis-Guided Bronchoscopic Biopsy Confirmed by Intraprocedural Computed Tomography

<b><i>Background:</i></b> Digital fluoroscopic tomosynthesis-guided electromagnetic navigational bronchoscopy (F-ENB) is a novel adjunct to ENB associated with higher diagnostic yield. The likelihood of F-ENB allowing accurate placement of a biopsy needle within a target remains unclear. <b><i>Objective:</i></b> This study intends to determine the accuracy of F-ENB as confirmed by cone-beam computed tomography (CBCT) scan. <b><i>Methods:</i></b> Patients undergoing CBCT-assisted ENB for lung nodule biopsy were prospectively enrolled. ENB was performed followed by digital tomosynthesis correction. Once optimal F-ENB alignment was achieved, and a needle was advanced into the expected location of the nodule followed by CBCT. The primary outcome was the percentage of “needle-in-lesion” hits, defined as needle tip within the nodule in 3 planes. Secondary outcomes were diagnostic yield, procedure and room time, complications, radiation, and distance between the needle tip and nodule. <b><i>Results:</i></b> Twenty-six patients with a total of 29 nodules were enrolled. Mean nodule size was 13 mm (±4 mm) in maximal axial dimension, 83% (<i>n</i> = 24) were located in the peripheral third of the chest, and 17% (<i>n</i> = 5) had a bronchus sign. F-ENB guidance resulted in needle-in-lesion in 21 of 29 nodules (72%). Mean needle tip-to-nodule distance for nonhits was 1.75 mm (±1.35 mm). There were no complications. <b><i>Conclusion:</i></b> F-ENB resulted in a needle-in-lesion biopsy in greater than 70% of nodules despite features traditionally associated with poor diagnostic yield (size, absence of bronchus sign). Mean distance between needle tip and target for nonhits was less than 2 mm. These data suggest F-ENB alignment is accurate for small peripheral nodules.

DEVELOPMENT OF MPACT FOR FULL-CORE SIMULATIONS OF MAGNOX GAS-COOLED NUCLEAR REACTORS

The MPACT code, jointly developed by Oak Ridge National Laboratory and University of Michigan, is designed to perform high-fidelity light water reactor (LWR) analysis using wholecore pin-resolved neutron transport calculations on modern parallel-computing hardware. MPACT uses the subgroup method for resonance self-shielding, while the primary neutron transport solver uses a 2D/1D method that is based on the method of characteristics (MoC) for the x-y planes coupled with a 1D diffusion or transport solver in the axial dimension. Additional geometry capabilities are currently being developed in MPACT to support hexagonal-pitched lattices, as well as interstitial geometry (i.e., control rods at the corner of four adjacent pin cells). In this research, the MPACT method is tested on gas-cooled reactors by applying MPACT to full-core MAGNOX reactor test problems. MAGNOX test problems were chosen due to the availability of high-quality reactor design and validation data (available through an ongoing collaboration with the National Nuclear Laboratory in the United Kingdom) and the existence of a relatively complex axial power shape that is expected to challenge the MPACT method. MPACT’s convergence for partial- and full-core problems will be tested and verified. MPACT will be compared with high-fidelity continuous-energy Monte Carlo simulations to verify core reactivity, power distributions, and performance of the available cross section data libraries and energy group structures.

Three-dimensional deconvolution processing for STEM cryotomography

The complex environment of biological cells and tissues has motivated development of three-dimensional (3D) imaging in both light and electron microscopies. To this end, one of the primary tools in fluorescence microscopy is that of computational deconvolution. Wide-field fluorescence images are often corrupted by haze due to out-of-focus light, i.e., to cross-talk between different object planes as represented in the 3D image. Using prior understanding of the image formation mechanism, it is possible to suppress the cross-talk and reassign the unfocused light to its proper source post facto. Electron tomography based on tilted projections also exhibits a cross-talk between distant planes due to the discrete angular sampling and limited tilt range. By use of a suitably synthesized 3D point spread function, we show here that deconvolution leads to similar improvements in volume data reconstructed from cryoscanning transmission electron tomography (CSTET), namely a dramatic in-plane noise reduction and improved representation of features in the axial dimension. Contrast enhancement is demonstrated first with colloidal gold particles and then in representative cryotomograms of intact cells. Deconvolution of CSTET data collected from the periphery of an intact nucleus revealed partially condensed, extended structures in interphase chromatin.

Enhanced 4Pi single-molecule localization microscopy with coherent pupil based localization

Over the last decades, super-resolution techniques have revolutionized the field of fluorescence microscopy. Among them, interferometric or 4Pi microscopy methods exhibit supreme resolving power in the axial dimension. Combined with single-molecule detection/localization and adaptive optics, current 4Pi microscopy methods enabled 10–15 nm isotropic 3D resolution throughout whole cells. However, further improving the achieved 3D resolution poses challenges arising from the complexity of single-molecule emission patterns generated by these coherent single-molecule imaging systems. These complex emission patterns render a large portion of information carrying photons unusable. Here, we introduce a localization algorithm that achieves the theoretical precision limit for a 4Pi based single-molecule switching nanoscopy (4Pi-SMSN) system, and demonstrate improvements in localization precision, accuracy as well as stability comparing with state-of-the-art 4Pi-SMSN methods.

Type synthesis of 90°/180° dual-function upenders for large shell units of nuclear reactor

In this paper, unit vectors collinear with the axes of large shell units of nuclear reactors were used to represent the poses of the workpieces. Based on the motion operator interpretation of the rotation matrix, 60 kinds of rotation matrix permutations with 90° turns as the step length to achieve 180° flipping of the workpiece were obtained. After eliminating invalid permutations and merging homogenous permutations, class I, II, and III flipping motion models were obtained. By calculating the Lie algebra of each step of rigid body motion in the flipping motion model, the twist and the motion pair property for each step were obtained. By means of the permutation and combination theory, the sequence of the motion pairs for different configurations was determined, and the rules between sequential transformations and axis changes of the motion pairs under the initial configuration were stipulated. Three classes of 19 initial configurations of 90°/180° dual-function upenders were constructed. For three of them, taking into account the characteristics of the axial dimension variation of workpieces, prismatic pairs were added along the workpiece’s axis (vector), and 15 overall configurations of 90°/180° dual-function upenders were synthesized. This provides the basic theoretical support for the innovative design of upenders with independent intellectual property rights.

Optical microscopy approaches angstrom precision, in 3D!

By coupling dye molecules with a graphene layer and localizing the molecules through quantification of fluorescence lifetime quenching, a novel imaging system offers unprecedented 1-nm resolution with angstrom precision in the axial dimension.