Association of biochar properties with changes in soil bacterial, fungal and fauna communities and nutrient cycling processes

Soil microorganisms play crucial roles in soil nutrient cycling, carbon sequestration, fertility maintenance and crop health and production. To date, the responses of microorganisms, such as microbial activity, diversity, community structure and nutrient cycling processes, to biochar addition have been widely reported. However, the relationships between soil microbial groups (bacteria, fungi and microscopic fauna) and biochar physicochemical properties have not been summarized. In this review, we conclude that biochar affects soil microbial growth, diversity and community compositions by directly providing growth promoters for soil biota or indirectly changing soil basic properties. The porous structure, labile C, high pH and electrochemical properties of biochar play an important role in determining soil microbial abundance and communities, and their mediated N and P cycling processes, while the effects and underlying mechanisms vary with biochar types that are affected by pyrolysis temperature and feedstock type. Finally, we highlight some issues related to research methodology and subjects that are still poorly understood or controversial, and the perspectives for further research in microbial responses to biochar addition.

Carbon storage in phosphorus limited grasslands may decline in response to elevated nitrogen deposition: a long term field manipulation and modelling study

<p>In ecosystems where nitrogen (N) limits plant productivity, N deposition can stimulate plant growth, and consequently, promote carbon (C) sequestration by increasing input of detrital C and other forms of plant C to the soil. However, other forms of nutrient limitation such as phosphorus (P) limitation and N-P co-limitation are widespread and may increase in prevalence with N deposition. Our understanding of how terrestrial ecosystem C, N and P cycling may be affected by N deposition when N is not the sole limiting resource is fairly limited. In this work, we investigate the consequences of enhanced N addition on C, N and P cycling in grasslands that exhibit contrasting forms of nutrient limitation.</p><p>We do so by collecting data from a long-term nutrient manipulation experiment on two N-P co-limited grasslands; an acidic grassland of stronger N-limitation and a calcareous grassland of stronger P limitation, and integrating this into a mechanistic C, N and P cycling model (N14CP). To simulate the experimental grasslands and explore the role of P access mechanisms in determining ecosystem state, we allowed P access to vary, and compared the outputs to plant-soil C, N and P data. Combinations of organic P access and inorganic P availability most closely representing data were used to simulate the grasslands and quantify their temporal response to nutrient manipulation.</p><p>The modelled grasslands showed contrasting responses to simulated N deposition. In the acidic grassland, N addition greatly increased C stocks by stimulating biomass productivity, but the same N treatments reduced the organic C pool in the calcareous grassland. Nitrogen deposition exacerbated P limitation in the calcareous grassland by reducing the size of the bioavailable P pool to plants, reducing biomass input to the soil C pool. Plant acquisition of organic P played an important role in determining the nutrient conditions of the grasslands, as both simulated grasslands increased organic P uptake to meet enhanced P demand driven by N deposition. Greater access to organic P in the acidic grassland prevented a shift to P limitation under elevated levels of N deposition, but organic P access was too low in the calcareous grassland to prevent worsening P limitation.</p><p>We conclude that grasslands of differing limiting nutrients may respond to N deposition in contrasting ways, and stress that as N deposition shifts ecosystems toward P limitation, a globally important carbon sink risks degradation.</p>

Sugarcane/peanut intercropping system improves physicochemical properties by changing N and P cycling and organic matter turnover in root zone soil

Background The sugarcane/peanut intercropping system is a specific and efficient cropping pattern in South China. Intercropping systems change the bacterial diversity of soils and decrease disease rates. It can not only utilized light, heat, water and land resources efficiently, but also increased yield and economic benefits of farmers. Methods We determined soil nutrients, enzymes and microbes in sugarcane/peanut intercropping system, and analyzed relevance of the soil physicochemical properties and the genes involved in N and P cycling and organic matter turnover by metagenome sequencing. Results The results showed that sugarcane/peanut intercropping significantly boosted the content of total nitrogen, available phosphorus, total potassium, organic matter, pH value and bacteria and enhanced the activity of acid phosphatase compared to monocropping. Especially the content of available nitrogen, available phosphorus and organic matter increased significantly by 20.1%, 65.3% and 56.0% in root zone soil of IP2 treatment than monocropping treatment. The content of available potassium and microbial biomass carbon, as well as the activity of catalase, sucrase and protease, significantly decreased in intercropping root zone soil. Intercropping resulted in a significant increase by 7.8%, 16.2% and 23.0% in IS, IP1 and IP2, respectively, of the acid phosphatase content relative to MS. Metagenomic analysis showed that the pathways involved in carbohydrate and amino acid metabolism were dominant and more abundant in intercropping than in monocropping. Moreover, the relative abundances of genes related to N cycling (glnA, GLUD1_2, nirK), P cycling (phoR, phoB) and organic matter turnover (PRDX2_4) were higher in the intercropping soil than in the monocropping soil. The relative abundance of GLUD1_2 and phoR were 25.5% and 13.8% higher in the IP2 treatment respectively,and bgIX was higher in IS treatment compared to the monocropping treatment. Genes that were significantly related to phosphorus metabolism and nitrogen metabolism (TREH, katE, gudB) were more abundant in intercropping than in monocropping. Conclusion The results of this study indicate that the intercropping system changed the numbers of microbes as well as enzymes activities, and subsequently regulate genes involved in N cycling, P cycling and organic matter turnover. Finally, it leads to the increase of nutrients in root zone soil and improved the soil environment.

Seasonal Changes in Pinus tabuliformis Root-Associated Fungal Microbiota Drive N and P Cycling in Terrestrial Ecosystem

In terrestrial ecosystems, mycorrhizal roots play a key role in the cycling of soil carbon (C) and other nutrients. The impact of environmental factors on the mycorrhizal fungal community has been well studied; however, the seasonal variations in the root-associated fungal microbiota affected by environmental changes are less clear. To improve the understanding of how environmental factors shape the fungal microbiota in mycorrhizal roots, seasonal changes in Pinus tabuliformis root-associated fungi were investigated. In the present study, the seasonal dynamics of edaphic properties, soil enzymatic activities, root fungal colonization rates, and root-associated fungal microbiota in P. tabuliformis forests were studied across four seasons during a whole year to reveal their correlations with environmental changes. The results indicate that the soil functions, such as the enzymatic activities related to nitrogen (N) and phosphorus (P) degradation, were varied with the seasonal changes in microclimate factors, resulting in a significant fluctuation of edaphic properties. In addition, the ectomycorrhizal fungal colonization rate in the host pine tree roots increased during warm seasons (summer and autumn), while the fungal colonization rate of dark septate endophyte was declined. Moreover, the present study indicates that the fungal biomass increased in both the pine roots and rhizospheric soils during warm seasons, while the fungal species richness and diversity decreased. While the Basidiomycota and Ascomycota were the two dominant phyla in both root and soil fungal communities, the higher relative abundance of Basidiomycota taxa presented in warm seasons. In addition, the fungal microbial network complexity declined under the higher temperature and humidity conditions. The present study illustrates that the varieties in connectivity between the microbial networks and in functional taxa of root-associated fungal microbiota significantly influence the soil ecosystem functions, especially the N and P cycling.

Soil C, N and P cycling enzyme responses to nutrient limitation under elevated CO2

Elevated CO2 (eCO2) can stimulate plant productivity and increase carbon (C) input to soils, but nutrient limitation restricts productivity. Despite phosphorus (P)-limited ecosystems increasing globally, it is unknown how nutrient cycling, particularly soil microbial extra cellular enzyme activity (EEA), will respond to eCO2 in such ecosystems. Long-term nutrient manipulation plots from adjacent P-limited acidic and limestone grasslands were exposed to eCO2 (600 ppm) provided by a mini-Free Air CO2 Enrichment system. P-limitation was alleviated (35 kg-P ha−1 y−1 (P35)), exacerbated (35 kg-N ha−1 y−1 (N35), 140 kg-N ha−1 y−1 (N140)), or maintained (control (P0N0)) for > 20 years. We measured EEAs of C-, N- and P-cycling enzymes (1,4-β-glucosidase, cellobiohydrolase, N-acetyl β-D-glucosaminidase, leucine aminopeptidase, and acid phosphatase) and compared C:N:P cycling enzyme ratios using a vector analysis. Potential acid phosphatase activity doubled under N additions relative to P0N0 and P35 treatments. Vector analysis revealed reduced C-cycling investment and increased P-cycling investment under eCO2. Vector angle significantly increased with P-limitation (P35 < P0N0 < N35 < N140) indicating relatively greater investment in P-cycling enzymes. The limestone grassland was more C limited than the acidic grassland, characterised by increased vector length, C:N and C:P enzyme ratios. The absence of interactions between grassland type and eCO2 or nutrient treatment for all enzyme indicators signaled consistent responses to changing P-limitation and eCO2 in both grasslands. Our findings suggest that eCO2 reduces C limitation, allowing increased investment in P- and N-cycle enzymes with implications for rates of nutrient cycling, potentially alleviating nutrient limitation of ecosystem productivity under eCO2. Graphic abstract "Image missing"

Changes in soil warming effects on microbial C, N and P cycling across seasons in a temperate calcareous mixed forest

&lt;p&gt;Global warming may accelerate soil carbon (C) and nutrient cycling as higher temperatures accelerate soil microbial and enzymatic activities. However, this enhanced soil C cycling can diminish with time due to the depletion of labile soil C or due to thermal acclimation of soil microbes, while the increased N cycling may be dampened over time in N-rich soils. Moreover, soil climate as well as the quality and quantity of plant inputs change between seasons, which could influence the C: nitrogen (N): phosphorus (P) stoichiometry of resources available for microbes and thereby alter the warming effect on microbial activities and nutrient cycling between seasons. Such seasonal changes caused inconsistent warming effects on extracellular enzyme activities and on soil respiration in some experiments, with warming effects turning from positive to negative between seasons, yet the underlying controls of these adverse effects are far from being well understood. In this study, we therefore aimed to investigate soil warming and seasonal effects on soil C, N, and P pools and processes in a temperate calcareous mixed forest. We collected soil samples in spring, summer and fall (May, August, and October 2019) from a long-term (&gt;15 yrs) soil warming experiment in Achenkirch, Northern Limestone Alps, Austria (47&amp;#176;34&amp;#8217; 50&amp;#8217;&amp;#8217; N; 11&amp;#176;38&amp;#8217; 21&amp;#8217;&amp;#8217; E; 910 m a.s.l.). The samples were incubated at the corresponding in-situ temperatures in the laboratory. Microbial growth, respiration and C use efficiency were determined by following &lt;sup&gt;18&lt;/sup&gt;O-H&lt;sub&gt;2&lt;/sub&gt;O incorporation in DNA and by gas analysis. &lt;sup&gt;15&lt;/sup&gt;N pool dilution assays were applied to quantify gross rates of protein depolymerization, N mineralization, and nitrification, whilst gross rates of soil inorganic P mobilization were measured by a &lt;sup&gt;33&lt;/sup&gt;P pool dilution assay. Moreover, we measured the potential soil enzyme activities of four hydrolases and two oxidases, and determined contents of labile (extractable) and microbial biomass C, N, and P. This study will thereby provide a comprehensive insight into how soil warming influences soil microbial C, N, and P cycling in a temperate calcareous mixed forest as well as into their energetic, stoichiometric and soil microclimatic constraints. The long-term nature of this soil warming experiment will therefore allow predictions of the future biogeochemical behavior of calcareous forest soils, and deduce potential feed-backs on forest productivity, atmospheric composition and climate change.&lt;/p&gt;

Rhizosphere Bacterial Community Structure and Predicted Functional Analysis in the Water-Level Fluctuation Zone of the Danjiangkou Reservoir in China During the Dry Period

The water-level fluctuation zone (WLFZ) is a transitional zone between terrestrial and aquatic ecosystems. Plant communities that are constructed artificially in the WLFZ can absorb and retain nutrients such as nitrogen (N) and phosphorus (P). However, the microbial community composition and function associated with this process have not been elucidated. In this study, four artificially constructed plant communities, including those of herbs (Cynodon dactylon and Chrysopogon zizanioides), trees (Metasequoia glyptostroboides), and shrubs (Salix matsudana) from the newly formed WLFZ of the Danjiangkou Reservoir were evaluated. The bacterial community compositions were analyzed by 16S rRNA gene sequencing using a MiSeq platform, and the functions of these communities were assessed via Phylogenetic Investigation of Communities by Reconstruction of Unobserved States (PICRUSt) analysis. The results showed that the bacterial communities primarily comprised 362 genera from 24 phyla, such as Proteobacteria, Acidobacteria, Actinobacteria, and Gemmatimonadetes, showing the richness of the community composition. Planting altered the bacterial community composition, with varying effects observed among the different plant types. The bacterial community functional analysis revealed that these bacteria were primarily associated with six biological metabolic pathway categories (e.g., metabolism, genetic information processing, and environmental information processing) with 34 subfunctions, showing the richness of community functions. The planting of M. glyptostroboides, S. matsudana, and C. dactylon improved the metabolic capabilities of bacterial communities. N- and P-cycling gene analysis showed that planting altered the N- and P-cycling metabolic capacities of soil bacteria. The overall N- and P-metabolic capacity was highly similar between C. dactylon and C. zizanioides samples and between S. matsudana and M. glyptostroboides samples. The results of this study provide a preliminary analysis of soil bacterial community structure and function in the WLFZ of the Danjiangkou Reservoir and provides a reference for vegetation construction in this zone.

Maize Inoculation with Microbial Consortia: Contrasting Effects on Rhizosphere Activities, Nutrient Acquisition and Early Growth in Different Soils

The benefit of plant growth-promoting microorganisms (PGPMs) as plant inoculants is influenced by a wide range of environmental factors. Therefore, microbial consortia products (MCPs) based on multiple PGPM strains with complementary functions, have been proposed as superior, particularly under challenging environmental conditions and for restoration of beneficial microbial communities in disturbed soil environments. To test this hypothesis, the performance of a commercial MCP inoculant based on 22 PGPM strains was investigated in greenhouse experiments with maize on three soils with contrasting pH, organic matter content and microbial activity, under different P and N fertilization regimes. Interestingly, the MCP inoculant stimulated root and shoot growth and improved the acquisition of macronutrients only on a freshly collected field soil with high organic matter content, exclusively in combination with stabilized ammonium fertilization. This was associated with transiently increased expression of AuxIAA5 in the root tissue, a gene responsive to exogenous auxin supply, suggesting root growth promotion by microbial auxin production as a major mode of action of the MCP inoculant. High microbial activity was indicated by intense expression of soil enzyme activities involved in C, N and P cycling in the rhizosphere (cellulase, leucine peptidase, alkaline and acid phosphatases) but without MCP effects. By contrast, the MCP inoculation did not affect maize biomass production or nutrient acquisition on soils with very little Corg and low microbial activity, although moderate stimulation of rhizosphere enzymes involved in N and P cycling was recorded. There was also no indication for MCP-induced solubilization of Ca-phosphates on a calcareous sub-soil fertilized with rock-phosphate. The results demonstrate that the combination of multiple PGPM strains with complementary properties as MCP inoculants does not necessarily translate into plant benefits in challenging environments. Thus, a better understanding of the conditions determining successful MCP application is mandatory.

Enhancement of Agricultural Policy/Environment eXtender Model (APEX) Model to Assess Effectiveness of Wetland Water Quality Functions

The Agricultural Policy/Environmental eXtender (APEX) model has been widely used to assess changes in agrochemical loadings in response to conservation and management led by US Department of Agriculture (USDA). However, the existing APEX model is limited in quantification of wetland water quality functions. This study improved the current model capacity to represent wetland water quality functions by addition of a new biogeochemical module into the APEX model. The performance of an enhanced APEX model was tested against five observed outgoing water quality variables (e.g., sediment, organic N, NO3, NH4 and PO4) from a wetland within the Eastern Shore of Maryland. Generalized Likelihood Uncertainty Estimation (GLUE) was implemented to assess model uncertainty. The enhanced APEX model demonstrated that it could effectively represent N and P cycling within the study wetland. Although improvement of model performance was limited, the additions of wetland biogeochemical routines to the APEX model improved our understanding of inner mass exchanges within N and P cycling for the study wetland. Overall, the updated APEX model can provide policymakers and managers with improved means for assessment of benefits delivered by wetland conservation.