Dynamic transcriptome analysis reveals AP2/ERF transcription factors responsible for cold stress in rapeseed (Brassica napus L.)

2016 ◽  
Vol 291 (3) ◽  
pp. 1053-1067 ◽  
Author(s):  
Chunfang Du ◽  
Kaining Hu ◽  
Shuanshi Xian ◽  
Chunqing Liu ◽  
Jianchun Fan ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Brassica Napus ◽  
Cold Stress ◽  
Transcriptome Analysis ◽  
Brassica Napus L ◽  
Erf Transcription Factors

Comparative genome and transcriptome analysis unravels key factors of nitrogen use efficiency in Brassica napus L

2019 ◽  
Vol 43 (3) ◽  
pp. 712-731 ◽  
Author(s):  
Quan Li ◽  
Guangda Ding ◽  
Ningmei Yang ◽  
Philip John White ◽  
Xiangsheng Ye ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Nitrogen Use Efficiency ◽  
Transcriptome Analysis ◽  
Key Factors ◽  
Brassica Napus L ◽  
Nitrogen Use ◽  
Comparative Genome ◽  
Use Efficiency

scholarly journals Unravelling the Complex Interplay of Transcription Factors Orchestrating Seed Oil Content in Brassica napus L.

2021 ◽  
Vol 22 (3) ◽  
pp. 1033
Author(s):  
Abirami Rajavel ◽  
Selina Klees ◽  
Johanna-Sophie Schlüter ◽  
Hendrik Bertram ◽  
Kun Lu ◽  
...  
Keyword(s):  
Gene Expression ◽  
Transcription Factors ◽  
Brassica Napus ◽  
Oil Content ◽  
Seed Oil ◽  
Seed Oil Content ◽  
Complex Interplay ◽  
Brassica Napus L ◽  
Data Set ◽  
Developmental Switches

Transcription factors (TFs) and their complex interplay are essential for directing specific genetic programs, such as responses to environmental stresses, tissue development, or cell differentiation by regulating gene expression. Knowledge regarding TF–TF cooperations could be promising in gaining insight into the developmental switches between the cultivars of Brassica napus L., namely Zhongshuang11 (ZS11), a double-low accession with high-oil- content, and Zhongyou821 (ZY821), a double-high accession with low-oil-content. In this regard, we analysed a time series RNA-seq data set of seed tissue from both of the cultivars by mainly focusing on the monotonically expressed genes (MEGs). The consideration of the MEGs enables the capturing of multi-stage progression processes that are orchestrated by the cooperative TFs and, thus, facilitates the understanding of the molecular mechanisms determining seed oil content. Our findings show that TF families, such as NAC, MYB, DOF, GATA, and HD-ZIP are highly involved in the seed developmental process. Particularly, their preferential partner choices as well as changes in their gene expression profiles seem to be strongly associated with the differentiation of the oil content between the two cultivars. These findings are essential in enhancing our understanding of the genetic programs in both cultivars and developing novel hypotheses for further experimental studies.

scholarly journals Fine-mapping and transcriptome analysis of a candidate gene controlling plant height in Brassica napus L.

2020 ◽  
Vol 13 (1) ◽  
Author(s):  
Xiaodong Wang ◽  
Ming Zheng ◽  
Hongfang Liu ◽  
Liang Zhang ◽  
Feng Chen ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Candidate Gene ◽  
Plant Height ◽  
Fine Mapping ◽  
Transcriptome Analysis ◽  
Brassica Napus L

scholarly journals Overexpression of Soybean Transcription Factors GmDof4 and GmDof11 Significantly Increase the Oleic Acid Content in Seed of Brassica napus L.

Agronomy ◽  
2018 ◽  
Vol 8 (10) ◽  
pp. 222 ◽  
Author(s):  
Qinfu Sun ◽  
Jueyi Xue ◽  
Li Lin ◽  
Dongxiao Liu ◽  
Jian Wu ◽  
...  
Keyword(s):  
Fatty Acid Composition ◽  
Transcription Factors ◽  
Oleic Acid ◽  
Fatty Acid ◽  
Brassica Napus ◽  
Acid Content ◽  
Fatty Acid Biosynthesis ◽  
Oleic Acid Content ◽  
Acid Biosynthesis ◽  
Brassica Napus L

Rapeseed (Brassica napus L.) with substantial lipid and oleic acid content is of great interest to rapeseed breeders. Overexpression of Glycine max transcription factors Dof4 and Dof11 increased lipid accumulation in Arabidopsis and microalgae, in addition to modifying the quantity of certain fatty acid components. Here, we report the involvement of GmDof4 and GmDof11 in regulating fatty acid composition in rapeseeds. Overexpression of GmDof4 and GmDof11 in rapeseed increased oleic acid content and reduced linoleic acid and linolenic acid. Both qPCR and the yeast one-hybrid assay indicated that GmDof4 activated the expression of FAB2 by directly binding to the cis-DNA element on its promoters, while GmDof11 directly inhibited the expression of FAD2. Thus, GmDof4 and GmDof11 might modify the oleic acid content in rapeseed by directly regulating the genes that are associated with fatty acid biosynthesis.

Transcriptome analysis reveals differentially expressed ERF transcription factors associated with salt response in cotton

Plant Science ◽  
2019 ◽  
Vol 281 ◽  
pp. 72-81 ◽  
Author(s):  
Lu Long ◽  
Wen-Wen Yang ◽  
Peng Liao ◽  
Ya-Wei Guo ◽  
Arvind Kumar ◽  
...  
Keyword(s):  
Transcription Factors ◽  
Transcriptome Analysis ◽  
Differentially Expressed ◽  
Factors Associated ◽  
Salt Response ◽  
Erf Transcription Factors

scholarly journals Genome-wide analysis of AP2/ERF transcription factors family in Brassica napus

2020 ◽  
Vol 26 (7) ◽  
pp. 1463-1476 ◽  
Author(s):  
Razieh Ghorbani ◽  
Zahra Zakipour ◽  
Abbas Alemzadeh ◽  
Hooman Razi
Keyword(s):  
Transcription Factors ◽  
Brassica Napus ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Erf Transcription Factors

scholarly journals Transcriptome analysis of the irregular shape of shoot apical meristem in dt (dou tou) mutant of Brassica napus L.

2019 ◽  
Vol 39 (3) ◽  
Author(s):  
Ke-Ming Zhu ◽  
Shuo Xu ◽  
Kai-Xia Li ◽  
Sheng Chen ◽  
Sundus Zafar ◽  
...  
Keyword(s):  
Brassica Napus ◽  
Transcriptome Analysis ◽  
Shoot Apical Meristem ◽  
Apical Meristem ◽  
Irregular Shape ◽  
Brassica Napus L
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