scholarly journals Global high-throughput genotyping of organellar genomes reveals insights into the origin and spread of invasive starry stonewort (Nitellopsis obtusa)

2021 ◽  
Author(s):  
Robin S. Sleith ◽  
Kenneth G. Karol
Keyword(s):  
High Throughput ◽  
Western Europe ◽  
Invasive Plant ◽  
Population Level ◽  
Control Measures ◽  
Herbarium Specimens ◽  
Native Plant ◽  
Nitellopsis Obtusa ◽  
Invasive Range ◽  
Organellar Genomes

AbstractAquatic invasive species are damaging to native ecosystems. Preventing their spread and achieving comprehensive control measures requires an understanding of the genetic structure of an invasive population. Organellar genomes (plastid and mitochondrial) are useful for population level analyses of invasive plant distributions. In this study we generate complete organellar reference genomes using PacBio sequencing, then use these reference sequences for SNP calling of high-throughput, multiplexed, Illumina based organellar sequencing of fresh and historical samples from across the native and invasive range of Nitellopsis obtusa (Desv. in Loisel.) J.Groves, an invasive macroalgae. The data generated by the analytical pipeline we develop indicate introduction to North America from Western Europe. A single nucleotide transversion in the plastid genome separates a group of five samples from Michigan and Wisconsin that either resulted from introductions of two closely related genotypes or a mutation that has arisen in the invasive range. This transversion will serve as a useful tool to understand how Nitellopsis obtusa moves across the landscape. The methods and analyses described here are broadly applicable to invasive and native plant and algae species, and allow efficient genotyping of variable quality samples, including 100-year-old herbarium specimens, to determine population structure and geographic distributions.

scholarly journals Prime waterfront real estate: Apple snails choose wild taro for oviposition sites

2011 ◽  
Vol 57 (5) ◽  
pp. 630-641 ◽  
Author(s):  
Colin H. Kyle ◽  
Alexis W. Kropf ◽  
Romi L. Burks
Keyword(s):  
Reproductive Output ◽  
Invasive Plant ◽  
Gulf Coast ◽  
The United States ◽  
Control Measures ◽  
Female Size ◽  
Native Plant ◽  
Volume Number ◽  
Emergent Plants ◽  
Exotic Invasive

Abstract While difficult to prevent introductions, scientific research can help guide control efforts of exotic, invasive species. South American island apple snails Pomacea insularum have quickly spread across the United States Gulf Coast and few control measures exist to delay their spread. Usually occupying cryptic benthic habitats, female apple snails crawl out of the water to deposit large, bright pink egg clutches on emergent objects. To help identify the most likely place to find and remove clutches, we conducted four lab experiments to investigate what specific object qualities (i.e. material; shape and height; plant species; natural and artificial) attracted P. insularum females to lay clutches. In our fourth experiment, we specifically examined the relationship between female size and reproductive output. To further understand reproductive output, we quantified experimental clutch characteristics (height above water, dimensions, mass, approximate volume, number of eggs, hatching efficiency). Pomacea insu-larum females laid more clutches on plant material, chose round over flat surfaces and failed to differentiate between tall and short structures. In comparison to a common native plant in the eastern US, Pontederia cordata, snails clearly preferred to lay clutches on a widely distributed exotic, invasive plant (wild taro, Colocasia esculenta). Unexpectedly, smaller snails showed higher overall total fecundity as well as more eggs per clutch than larger snails. Therefore, hand removal efforts of large females may not be enough to slow down clutch production. Collectively, our results indicate that conservationists and managers should search emergent plants for P. insularum clutches carefully to guard against established populations.

Planting native trees to restore riparian forests increases biotic resistance to non-native plant invasions

2021 ◽  
pp. 1-24
Author(s):  
Chad F. Hammer ◽  
John S. Gunn
Keyword(s):  
United States ◽  
Ecosystem Service ◽  
Invasive Plant ◽  
Biotic Resistance ◽  
The United States ◽  
Tree Regeneration ◽  
Tree Planting ◽  
Plant Colonization ◽  
Native Plant ◽  
Native Trees

Abstract Non-native invasive plant species are a major cause of ecosystem degradation and impairment of ecosystem service benefits in the United States. Forested riparian areas provide many ecosystem service benefits and are vital to maintaining water quality of streams and rivers. These systems are also vulnerable to natural disturbances and invasion by non-native plants. We assessed whether planting native trees on disturbed riparian sites may increase biotic resistance to invasive plant establishment in central Vermont in the northeastern United States. The density (stems/m2) of invasive stems was higher in non-planted sites (x̄=4.1 stems/m2) compared to planted sites (x̄=1.3 stems/m2). More than 90% of the invasive plants were Japanese knotweed (Fallopia japonica). There were no significant differences in total stem density of native vegetation between planted and non-planted sites. Other measured response variables such as native tree regeneration, species diversity, soil properties and soil function showed no significant differences or trends in the paired riparian study sites. The results of this case study indicate that tree planting in disturbed riparian forest areas may assist conservation efforts by minimizing the risk of invasive plant colonization.

scholarly journals INSIGHT: A population-scale COVID-19 testing strategy combining point-of-care diagnosis with centralized high-throughput sequencing

2021 ◽  
Vol 7 (7) ◽  
pp. eabe5054
Author(s):  
Qianxin Wu ◽  
Chenqu Suo ◽  
Tom Brown ◽  
Tengyao Wang ◽  
Sarah A. Teichmann ◽  
...  
Keyword(s):  
High Throughput ◽  
High Throughput Sequencing ◽  
Limit Of Detection ◽  
Point Of Care ◽  
Population Level ◽  
Reaction Products ◽  
Testing Strategy ◽  
Asymptomatic Patients ◽  
Testing Stage ◽  
Population Scale

We present INSIGHT [isothermal NASBA (nucleic acid sequence–based amplification) sequencing–based high-throughput test], a two-stage coronavirus disease 2019 testing strategy, using a barcoded isothermal NASBA reaction. It combines point-of-care diagnosis with next-generation sequencing, aiming to achieve population-scale testing. Stage 1 allows a quick decentralized readout for early isolation of presymptomatic or asymptomatic patients. It gives results within 1 to 2 hours, using either fluorescence detection or a lateral flow readout, while simultaneously incorporating sample-specific barcodes. The same reaction products from potentially hundreds of thousands of samples can then be pooled and used in a highly multiplexed sequencing–based assay in stage 2. This second stage confirms the near-patient testing results and facilitates centralized data collection. The 95% limit of detection is <50 copies of viral RNA per reaction. INSIGHT is suitable for further development into a rapid home-based, point-of-care assay and is potentially scalable to the population level.

The Biology of Invasive Alien Plants in Canada. 4. Heracleum mantegazzianum Sommier & Levier

2006 ◽  
Vol 86 (2) ◽  
pp. 569-589 ◽  
Author(s):  
Nicholas A. Page ◽  
Ronald E. Wall ◽  
Stephen J. Darbyshire ◽  
Gerald A. Mulligan
Keyword(s):  
British Columbia ◽  
Urban Areas ◽  
Native Species ◽  
Invasive Plant ◽  
Leaf Shape ◽  
Herbarium Specimens ◽  
Natural Ecosystems ◽  
Alien Plant ◽  
Invasive Alien Plant ◽  
Heracleum Mantegazzianum

Heracleum mantegazzianum (giant hogweed) is an invasive alien plant of management concern in southern Canada where it has escaped from horticulture and established and spread in natural, ruderal, and agricultural ecosystems. It poses a threat to natural ecosystems and human health, and is also a weed in agricultural and urban areas. It is a member of the Carrot family (Apiaceae) and is closely related to the native species Heracleum maximum Bartram (cow-parsnip). It is a monocarpic perennial, which generally flowers in its 3rd or 4th year. Large size, leaf shape, dark reddish pigments in patches on stems and petioles, and fruit characteristics readily distinguish H. mantegazzianum from other plants in Canada. It is increasingly common in riparian areas, floodplains, and forest edges in or near urban areas in southwestern British Columbia and southern Ontario. Based on herbarium specimens, H. mantegazzianum was first recorded in Ontario in 1949, British Columbia in 1964, Nova Scotia in 1980, Quebec in 1990, and New Brunswick in 2000. The development of dense stands of H. mantegazzianum can also reduce the richness of native plants. Contact with H. mantegazzianum can cause phytophotodermatitis, a serious skin inflammation caused by UV photo-activation of furanocoumarins present in the sap. Control methods include herbicide application, mechanical cutting, and animal grazing, but strategies to address seed dispersal and re-establishment from dormant seed must also be adopted. Widespread establishment in southern Canada suggests that eradication is unlikely. However, range expansion and rapid population growth can be prevented through strategic management including public education. Key words: Giant hogweed, Heracleum mantegazzianum, Apiaceae, HERMZ, invasive plant, weed biology, furanocoumarins

scholarly journals Current Perspectives on High-Throughput Sequencing (HTS) for Adventitious Virus Detection: Upstream Sample Processing and Library Preparation

Viruses ◽  
2018 ◽  
Vol 10 (10) ◽  
pp. 566 ◽  
Author(s):  
Siemon Ng ◽  
Cassandra Braxton ◽  
Marc Eloit ◽  
Szi Feng ◽  
Romain Fragnoud ◽  
...  
Keyword(s):  
Sample Preparation ◽  
Nucleic Acids ◽  
High Throughput ◽  
High Throughput Sequencing ◽  
Virus Detection ◽  
Extraction Methods ◽  
Control Measures ◽  
Acid Extraction ◽  
Library Preparation ◽  
Sample Processing

A key step for broad viral detection using high-throughput sequencing (HTS) is optimizing the sample preparation strategy for extracting viral-specific nucleic acids since viral genomes are diverse: They can be single-stranded or double-stranded RNA or DNA, and can vary from a few thousand bases to over millions of bases, which might introduce biases during nucleic acid extraction. In addition, viral particles can be enveloped or non-enveloped with variable resistance to pre-treatment, which may influence their susceptibility to extraction procedures. Since the identity of the potential adventitious agents is unknown prior to their detection, efficient sample preparation should be unbiased toward all different viral types in order to maximize the probability of detecting any potential adventitious viruses using HTS. Furthermore, the quality assessment of each step for sample processing is also a critical but challenging aspect. This paper presents our current perspectives for optimizing upstream sample processing and library preparation as part of the discussion in the Advanced Virus Detection Technologies Interest group (AVDTIG). The topics include: Use of nuclease treatment to enrich for encapsidated nucleic acids, techniques for amplifying low amounts of virus nucleic acids, selection of different extraction methods, relevant controls, the use of spike recovery experiments, and quality control measures during library preparation.

scholarly journals INVASIVE PLANTS - A BOON OR BANE TO THE LEPIDOPTERON FAUNA: CONSERVATION AND MANAGEMENT PLAN SUGGESTIONS

2017 ◽  
Vol 4 (1) ◽  
pp. 148-160
Author(s):  
Arjun C.P ◽  
Anoop V.K ◽  
Tijo K.J ◽  
Anoopkumar T.K ◽  
Roshnath R
Keyword(s):  
Invasive Species ◽  
Plant Species ◽  
Invasive Plants ◽  
Management Practices ◽  
Invasive Plant ◽  
Management Plan ◽  
Control Measures ◽  
Pteridium Aquilinum ◽  
Native Flora ◽  
Long Run

Butterfly diversity was recorded from Nov (2013) - May (2014) in Pookode region. A total number of 128 species recorded from the five families; Nymphalidae (46 species) Lycaenidae (28 species), Hesperiidae (22 species), Pieridae (17 species) and Papilionidae (15 species) respectively. During the survey invasive plant species were also recorded. There were 36 species of invasive plants from 18 families identified from the study area. More butterflies were attracted towards nectar offering invasive plants. Chromolaena odorata, Ipomea cairica, Lantana camara, Merremia vitifolia, Mikania micrantha, Mimosa diplotricha, Pennisetumpolystachyon, Pteridium aquilinum, Quisqualis indica and Sphagneticola trilobata were the major invasive plants found in the Pookode region and their flower attracts butterfly for pollination. Even though nectar offered by the plants are supportive for growth, in long run these species can affect butterfly population bydeclining native host larval plant species for butterfly reproduction. Invasive species compete with the native flora and reduce its population. Management practices like physical, chemical and modern bio control measures could be used for eradicating of invasive plants. Wise use of invasive plants for other economical purpose such as bio-fuel, medicinal purpose, bio-pesticide and handicraft could be suggested. Successful management of invasive species are needed for conserving Lepidoptera fauna and other native biota of the area.

scholarly journals Are declines in insects and insectivorous birds related?

The Condor ◽  
2021 ◽  
Author(s):  
Douglas W Tallamy ◽  
W Gregory Shriver
Keyword(s):  
Plant Species ◽  
Invasive Plant ◽  
Bird Species ◽  
Insect Herbivores ◽  
Native Plant ◽  
Insectivorous Birds ◽  
Population Declines ◽  
Native Plant Species ◽  
Host Plant Specialization ◽  
Scale Population

Abstract A flurry of recently published studies indicates that both insects and birds have experienced wide-scale population declines in the last several decades. Curiously, whether insect and bird declines are causally linked has received little empirical attention. Here, we hypothesize that insect declines are an important factor contributing to the decline of insectivorous birds. We further suggest that insect populations essential to insectivorous birds decline whenever non-native lumber, ornamental, or invasive plant species replace native plant communities. We support our hypothesis by reviewing studies that show (1) due to host plant specialization, insect herbivores typically do poorly on non-native plants; (2) birds are often food limited; (3) populations of insectivorous bird species fluctuate with the supply of essential insect prey; (4) not all arthropod prey support bird reproduction equally well; and (5) terrestrial birds for which insects are an essential source of food have declined by 2.9 billion individuals over the last 50 years, while terrestrial birds that do not depend on insects during their life history have gained by 26.2 million individuals, a 111-fold difference. Understanding the consequences of insect declines, particularly as they affect charismatic animals like birds, may motivate land managers, homeowners, and restoration ecologists to take actions that reverse these declines by favoring the native plant species that support insect herbivores most productively.

scholarly journals Interactive effects of climate change and plant invasion on alpine biodiversity and ecosystem dynamics

2021 ◽  
Author(s):  
◽  
Justyna Giejsztowt
Keyword(s):  
Climate Change ◽  
New Zealand ◽  
Plant Species ◽  
Climate Warming ◽  
Plant Invasion ◽  
Invasive Plant ◽  
Ecosystem Dynamics ◽  
Interactive Effects ◽  
Native Plant ◽  
Competition For Pollination

<p>Drivers of global change have direct impacts on the structure of communities and functioning of ecosystems, and interactions between drivers may buffer or exacerbate these direct effects. Interactions among drivers can lead to complex non-linear outcomes for ecosystems, communities and species, but are infrequently quantified. Through a combination of experimental, observational and modelling approaches, I address critical gaps in our understanding of the interactive effects of climate change and plant invasion, using Tongariro National Park (TNP; New Zealand) as a model. TNP is an alpine ecosystem of cultural significance which hosts a unique flora with high rates of endemism. TNP is invaded by the perennial shrub Calluna vulgaris (L.) Hull. My objectives were to: 1) determine whether species-specific phenological shifts have the potential to alter the reproductive capacity of native plants in landscapes affected by invasion; 2) determine whether the effect of invasion intensity on the Species Area Relationship (SAR) of native alpine plant species is influenced by environmental stress; 3) develop a novel modelling framework that would account for density-dependent competitive interactions between native species and C. vulgaris and implement it to determine the combined risk of climate change and plant invasion on the distribution of native plant species; and 4) explore the possible mechanisms leading to a discrepancy in C. vulgaris invasion success on the North and South Islands of New Zealand. I show that species-specific phenological responses to climate warming increase the flowering overlap between a native and an invasive plant. I then show that competition for pollination with the invader decreases the sexual reproduction of the native in some landscapes. I therefore illustrate a previously undescribed interaction between climate warming and plant invasion where the effects of competition for pollination with an invader on the sexual reproduction of the native may be exacerbated by climate warming. Furthermore, I describe a previously unknown pattern of changing invasive plant impact on SAR along an environmental stress gradient. Namely, I demonstrate that interactions between an invasive plant and local native plant species richness become increasingly facilitative along elevational gradients and that the strength of plant interactions is dependent on invader biomass. I then show that the consequences of changing plant interactions at a local scale for the slope of SAR is dependent on the pervasion of the invader. Next, I demonstrate that the inclusion of invasive species density data in distribution models for a native plant leads to greater reductions in predicted native plant distribution and density under future climate change scenarios relative to models based on climate suitability alone. Finally, I find no evidence for large-scale climatic, edaphic, and vegetative limitations to invasion by C. vulgaris on either the North and South Islands of New Zealand. Instead, my results suggest that discrepancies in invasive spread between islands may be driven by human activity: C. vulgaris is associated with the same levels of human disturbance on both islands despite differences in the presence of these conditions between then islands. Altogether, these results show that interactive effects between drivers on biodiversity and ecosystem dynamics are frequently not additive or linear. Therefore, accurate predictions of global change impacts on community structure and ecosystems function require experiments and models which include of interactions among drivers such as climate change and species invasion. These results are pertinent to effective conservation management as most landscapes are concurrently affected by multiple drivers of global environmental change.</p>

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