Comparison of morphological and molecular traits for species identification and taxonomic grouping of oncaeid copepods

Abstract Scedosporiosis/lomentosporiosis is a devastating emerging fungal infection. Our objective was to describe the clinical pattern and to analyze whether taxonomic grouping of the species involved was supported by differences in terms of clinical presentations or outcomes. We retrospectively studied cases of invasive scedosporiosis in France from 2005 through 2017 based on isolates characterized by polyphasic approach. We recorded 90 cases, mainly related to Scedosporium apiospermum (n = 48), S. boydii/S. ellipsoideum (n = 20), and Lomentospora prolificans (n = 14). One-third of infections were disseminated, with unexpectedly high rates of cerebral (41%) and cardiovascular (31%) involvement. In light of recent Scedosporium taxonomic revisions, we aimed to study the clinical significance of Scedosporium species identification and report for the first time contrasting clinical presentations between infections caused S. apiospermum, which were associated with malignancies and cutaneous involvement in disseminated infections, and infections caused by S. boydii, which were associated with solid organ transplantation, cerebral infections, fungemia, and early death. The clinical presentation of L. prolificans also differed from that of other species, involving more neutropenic patients, breakthrough infections, fungemia, and disseminated infections. Neutropenia, dissemination, and lack of antifungal prescription were all associated with 3-month mortality. Our data support the distinction between S. apiospermum and S. boydii and between L. prolificans and Scedosporium sp. Our results also underline the importance of the workup to assess dissemination, including cardiovascular system and brain. Lay Summary Scedosporiosis/lomentosporiosis is a devastating emerging fungal infection. Our objective was to describe the clinical pattern and to analyze whether taxonomic grouping of the species involved was supported by differences in terms of clinical presentations or outcomes.

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Chemical Species Identification in an SEM by Changes in Emitted X-Ray Energies

Proceedings, annual meeting, Electron Microscopy Society of America ◽

10.1017/s0424820100052869 ◽

1974 ◽

Vol 32 ◽

pp. 570-571

Author(s):

R. H. Duff

Keyword(s):

Species Identification ◽

Valence Electron ◽

Chemical Species ◽

X Rays ◽

Chemical Bonds ◽

Small Shift ◽

X Ray ◽

Electron Transitions ◽

Peak Energy ◽

Chemical Combination

A material irradiated with electrons emits x-rays having energies characteristic of the elements present. Chemical combination between elements results in a small shift of the peak energies of these characteristic x-rays because chemical bonds between different elements have different energies. The energy differences of the characteristic x-rays resulting from valence electron transitions can be used to identify the chemical species present and to obtain information about the chemical bond itself. Although these peak-energy shifts have been well known for a number of years, their use for chemical-species identification in small volumes of material was not realized until the development of the electron microprobe.

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182. When You Really Need to Know: Fungal Species Identification Using DNA Sequencing and Analysis

10.3320/1.2758535 ◽

2005 ◽

Author(s):

F. Wu ◽

S. Huang

Keyword(s):

Dna Sequencing ◽

Species Identification ◽

Fungal Species

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Beetles of the family Cryptophagidae (Coleoptera) in the collection of Zoological Museum of Taras Shevchenko National University of Kyiv

Ukrainian Entomological Journal ◽

10.15421/281909 ◽

2019 ◽

Vol 17 (2) ◽

pp. 10-24 ◽

Cited By ~ 2

Author(s):

K. Ocheretna

Keyword(s):

Species Identification ◽

Broad Sense ◽

Zoological Museum ◽

World War ◽

Identification Number ◽

Comprehensive List ◽

Carpathian Region ◽

The Family ◽

National University ◽

Collection Sites

The Cryptophagidae collection (Coleoptera: Cucujoidea) deposited at the Zoological Museum of the Taras Shevchenko National University of Kyiv (ZMKU) is described. The main authors of the collection are well-known researchers from the 1910–1930s, Orest Marcu and Karl Penecke. This is the largest collection of cryptophagids among the natural museums of Ukraine containing 304 specimens belonging to 85 species of 13 genera. In addition, 15 specimens of 5 species belonging to the families Erotylidae, Biphyllidae and Languriidae were among Cryptophagidae specimens. The collection, according to information available in the ZMKU, came to the museum not earlier than 1947 as the indemnity for the results of the II World War, most likely from Chernivtsi, where Marcu and Penecke worked. The vast majority of specimens is collected in the territory of modern Romania and Ukraine, and many specimens came from Chernivtsi. A table with an overview of all key details of the specimens is given, in which there are 6 fields: the name of the species on the label, details on the species identification, number of specimens, collection locality with the name of collector and remarks on the specimen, in particular, the instructions for decoding collection sites from the original labels. Annotations are made on the amount of the collection and the most important specimens and re-identification for each of the 13 genera. Some specimens are lost, probably during numerous collection migrations. In particular, some species (Cryptophagus simplex, C. lapidicola, C. nitidulus, Caenoscelis subdeplanata, Atomaria grandicollis, A. peltata, etc.) are represented in the collection only by the labels. The collection is important for the analysis of the composition of the fauna of the Carpathian region in the broad sense, since some species are encountered in the collection rarely; therefore it is important to clarify their locations to form the most comprehensive list of species of the Cryptophagids in the region. Several species of the family were included on the actual list of the fauna of the region on the basis of the study of this collection, in particular: Atomaria linearis, A. analis, A. apicalis, A. gravidula, Cryptophagus fasciatus, C. setulosus, etc.

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