scholarly journals Comprehensive Analysis of G1 Cyclin Docking Motif Sequences that Control CDK Regulatory Potency In Vivo

2020 ◽  
Vol 30 (22) ◽  
pp. 4454-4466.e5 ◽  
Author(s):  
Sushobhana Bandyopadhyay ◽  
Samyabrata Bhaduri ◽  
Mihkel Örd ◽  
Norman E. Davey ◽  
Mart Loog ◽  
...  
2012 ◽  
Vol 189 (1) ◽  
pp. 234-244 ◽  
Author(s):  
Timo Lischke ◽  
Anika Hegemann ◽  
Stephanie Gurka ◽  
Dana Vu Van ◽  
Yvonne Burmeister ◽  
...  

Author(s):  
Chunxi Zeng ◽  
Xucheng Hou ◽  
Jingyue Yan ◽  
Chengxiang Zhang ◽  
Wenqing Li ◽  
...  

AbstractSARS-CoV-2 has rapidly become a pandemic worldwide; therefore, an effective vaccine is urgently needed. Recently, messenger RNAs (mRNAs) have emerged as a promising platform for vaccination. Here, we systematically investigated the untranslated regions (UTRs) of mRNAs in order to enhance protein production. Through a comprehensive analysis of endogenous gene expression and de novo design of UTRs, we identified the optimal combination of 5’ and 3’ UTR, termed as NASAR, which was five to ten-fold more efficient than the tested endogenous UTRs. More importantly, NASAR mRNAs delivered by lipid-derived nanoparticles showed dramatic expression of potential SARS-CoV-2 antigens both in vitro and in vivo. These NASAR mRNAs merit further development as alternative SARS-CoV-2 vaccines.


eLife ◽  
2017 ◽  
Vol 6 ◽  
Author(s):  
Masato Maesako ◽  
Jana Horlacher ◽  
Katarzyna M Zoltowska ◽  
Ksenia V Kastanenka ◽  
Eleanna Kara ◽  
...  

The high levels of serine (S) and threonine (T) residues within the Presenilin 1 (PS1) N-terminus and in the large hydrophilic loop region suggest that the enzymatic function of PS1/γ-secretase can be modulated by its ‘phosphorylated’ and ‘dephosphorylated’ states. However, the functional outcome of PS1 phosphorylation and its significance for Alzheimer’s disease (AD) pathogenesis is poorly understood. Here, comprehensive analysis using FRET-based imaging reveals that activity-driven and Protein Kinase A-mediated PS1 phosphorylation at three domains (domain 1: T74, domain 2: S310 and S313, domain 3: S365, S366, and S367), with S367 being critical, is responsible for the PS1 pathogenic ‘closed’ conformation, and resulting increase in the Aβ42/40 ratio. Moreover, we have established novel imaging assays for monitoring PS1 conformation in vivo, and report that PS1 phosphorylation induces the pathogenic conformational shift in the living mouse brain. These phosphorylation sites represent potential new targets for AD treatment.


2010 ◽  
Vol 191 (1) ◽  
pp. 75-86 ◽  
Author(s):  
Martina Huranová ◽  
Ivan Ivani ◽  
Aleš Benda ◽  
Ina Poser ◽  
Yehuda Brody ◽  
...  

Precursor messenger RNA (pre-mRNA) splicing is catalyzed by the spliceosome, a large ribonucleoprotein (RNP) complex composed of five small nuclear RNP particles (snRNPs) and additional proteins. Using live cell imaging of GFP-tagged snRNP components expressed at endogenous levels, we examined how the spliceosome assembles in vivo. A comprehensive analysis of snRNP dynamics in the cell nucleus enabled us to determine snRNP diffusion throughout the nucleoplasm as well as the interaction rates of individual snRNPs with pre-mRNA. Core components of the spliceosome, U2 and U5 snRNPs, associated with pre-mRNA for 15–30 s, indicating that splicing is accomplished within this time period. Additionally, binding of U1 and U4/U6 snRNPs with pre-mRNA occurred within seconds, indicating that the interaction of individual snRNPs with pre-mRNA is distinct. These results are consistent with the predictions of the step-wise model of spliceosome assembly and provide an estimate on the rate of splicing in human cells.


2020 ◽  
Vol 59 (8) ◽  
pp. 886-896
Author(s):  
Arsheed A. Ganaie ◽  
Hifzur R. Siddique ◽  
Ishfaq A. Sheikh ◽  
Aijaz Parray ◽  
Lei Wang ◽  
...  

2013 ◽  
Vol 9 (9) ◽  
pp. e1003582 ◽  
Author(s):  
David Skurnik ◽  
Damien Roux ◽  
Hugues Aschard ◽  
Vincent Cattoir ◽  
Deborah Yoder-Himes ◽  
...  

Blood ◽  
2011 ◽  
Vol 118 (8) ◽  
pp. 2138-2149 ◽  
Author(s):  
Maria Candela Iglesias ◽  
Jorge R. Almeida ◽  
Solène Fastenackels ◽  
David J. van Bockel ◽  
Masao Hashimoto ◽  
...  

AbstractMapping the precise determinants of T-cell efficacy against viruses in humans is a public health priority with crucial implications for vaccine design. To inform this effort, we performed a comprehensive analysis of the effective CD8+ T-cell clonotypes that constitute responses specific for the HIV p24 Gag-derived KK10 epitope (KRWIILGLNK; residues 263-272) restricted by HLA-B*2705, which are known to confer superior control of viral replication in HIV-infected individuals. Particular KK10-specific CD8+ T-cell clonotypes, characterized by TRBV4-3/TRBJ1-3 gene rearrangements, were found to be preferentially selected in vivo and shared between individuals. These “public” clonotypes exhibit high levels of TCR avidity and Ag sensitivity, which impart functional advantages and enable effective suppression of HIV replication. The early L268M mutation at position 6 of the KK10 epitope enables the virus to avoid recognition by these highly effective CD8+ T-cell clonotypes. However, alternative clonotypes with variant reactivity provide flexibility within the overall KK10-specific response. These findings provide refined mechanistic insights into the workings of an effective CD8+ T-cell response against HIV.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Casandra Gomez-Paredes ◽  
Michael A. Mason ◽  
Bridget A. Taxy ◽  
Aikaterini S. Papadopoulou ◽  
Paolo Paganetti ◽  
...  

AbstractHuntington’s disease (HD) is a devastating neurodegenerative disorder, caused by a CAG/polyglutamine repeat expansion, that results in the aggregation of the huntingtin protein, culminating in the deposition of inclusion bodies in HD patient brains. We have previously shown that the heat shock response becomes impaired with disease progression in mouse models of HD. The disruption of this inducible arm of the proteostasis network is likely to exacerbate the pathogenesis of this protein-folding disease. To allow a rapid and more comprehensive analysis of the heat shock response, we have developed, and validated, a 16-plex QuantiGene assay that allows the expression of Hsf1 and nine heat shock genes, to be measured directly, and simultaneously, from mouse tissue. We used this QuantiGene assay to show that, following pharmacological activation in vivo, the heat shock response impairment in tibialis anterior, brain hemispheres and striatum was comparable between zQ175 and R6/2 mice. In contrast, although a heat shock impairment could be detected in R6/2 cortex, this was not apparent in the cortex from zQ175 mice. Whilst the mechanism underlying this impairment remains unknown, our data indicated that it is not caused by a reduction in HSF1 levels, as had been reported.


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