Layer removal method is an experiment method which is used to calculate the average stress indirectly by deformation of the specimen. However, in the experiment, some certain predeformation can be caused after each clamping, which can affect the accuracy of the test data, and make the deformation data larger. Based on the comparison of the simulation calculation, this paper builds an amended function by fitting the deformation error, which solves the deviation caused by larger deformation on stress calculation while the specimen is milled by layer, that is to say, the stress calculation model can be compensated by this function. This method can make the experimental calculation model more accurate.