scholarly journals Variation, mosaicism and degeneracy in the hominin foot.

2021 ◽  
pp. 1-41
Author(s):  
J. McClymont ◽  
K. Davids ◽  
R.H. Crompton
Keyword(s):  
Genetic Variation ◽  
Motor Control ◽  
Soft Tissue ◽  
Fossil Record ◽  
Bone Morphology ◽  
Fossil Bone ◽  
Ecological Processes ◽  
Natural Mechanism ◽  
Genome Level ◽  
Over Time

Abstract The fossil record is scarce and incomplete by nature. Animals and ecological processes devour soft tissue and important bony details over time and, when the dust settles, we are faced with a patchy record full of variation. Fossil taxa are usually defined by craniodental characteristics, so unless postcranial bones are found associated with a skull, assignment to taxon is unstable. Naming a locomotor category based on fossil bone morphology by analogy to living hominoids is not uncommon, and when no single locomotor label fits, postcrania are often described as exhibiting a “mosaic” of traits. Here, we contend that the unavoidable variation that characterises the fossil record can be described far more rigorously based on extensive work in human neurobiology and neuroanatomy, movement sciences and motor control and biomechanics research. In neurobiology, degeneracy is a natural mechanism of adaptation allowing system elements that are structurally different to perform the same function. This concept differs from redundancy as understood in engineering, where the same function is performed by identical elements. Assuming degeneracy, structurally different elements are able to produce different outputs in a range of environmental contexts, favouring ecological robusticity by enabling adaptations. Furthermore, as degeneracy extends to genome level, genetic variation is sustained, so that genes which might benefit an organism in a different environment remain part of the genome, favouring species’ evolvability.

scholarly journals The fossil record of whip spiders: the past of Amblypygi

PalZ ◽  
2021 ◽  
Author(s):  
Carolin Haug ◽  
Joachim T. Haug
Keyword(s):  
Fossil Record ◽  
3D Imaging ◽  
Three Dimensional ◽  
Dorsal Shield ◽  
Stereo Images ◽  
Geological Time ◽  
High Quality ◽  
The Past ◽  
Over Time

AbstractWhip spiders (Amblypygi), as their name suggests, resemble spiders (Araneae) in some aspects, but differ from them by their heart-shaped (prosomal) dorsal shield, their prominent grasping pedipalps, and their subsequent elongate pair of feeler appendages. The oldest possible occurrences of whip spiders, represented by cuticle fragments, date back to the Devonian (c. 385 mya), but (almost) complete fossils are known from the Carboniferous (c. 300 mya) onwards. The fossils include specimens preserved on slabs or in nodules (Carboniferous, Cretaceous) as well as specimens preserved in amber (Cretaceous, Eocene, Miocene). We review here all fossil whip spider specimens, figure most of them as interpretative drawings or with high-quality photographs including 3D imaging (stereo images) to make the three-dimensional relief of the specimens visible. Furthermore, we amend the list by two new specimens (resulting in 37 in total). The fossil specimens as well as modern whip spiders were measured to analyse possible changes in morphology over time. In general, the shield appears to have become relatively broader and the pedipalps and walking appendages have become more elongate over geological time. The morphological details are discussed in an evolutionary framework and in comparison with results from earlier studies.

scholarly journals The genomics of adaptation

2012 ◽  
Vol 279 (1749) ◽  
pp. 5024-5028 ◽  
Author(s):  
Jacek Radwan ◽  
Wiesław Babik
Keyword(s):  
Genetic Variation ◽  
Natural Selection ◽  
Royal Society ◽  
Genetic Basis ◽  
Genomic Data ◽  
Evolutionary Change ◽  
Introductory Article ◽  
Technological Advances ◽  
A Genome ◽  
Genome Level

The amount and nature of genetic variation available to natural selection affect the rate, course and outcome of evolution. Consequently, the study of the genetic basis of adaptive evolutionary change has occupied biologists for decades, but progress has been hampered by the lack of resolution and the absence of a genome-level perspective. Technological advances in recent years should now allow us to answer many long-standing questions about the nature of adaptation. The data gathered so far are beginning to challenge some widespread views of the way in which natural selection operates at the genomic level. Papers in this Special Feature of Proceedings of the Royal Society B illustrate various aspects of the broad field of adaptation genomics. This introductory article sets up a context and, on the basis of a few selected examples, discusses how genomic data can advance our understanding of the process of adaptation.

scholarly journals Soft tissue and cellular preservation in vertebrate skeletal elements from the Cretaceous to the present

2007 ◽  
Vol 274 (1607) ◽  
pp. 183-197 ◽  
Author(s):  
Mary Higby Schweitzer ◽  
Jennifer L Wittmeyer ◽  
John R Horner
Keyword(s):  
Soft Tissue ◽  
Soft Tissues ◽  
Bone Matrix ◽  
Molecular Data ◽  
Depositional Environments ◽  
Medullary Bone ◽  
Geological Time ◽  
Fossil Bone ◽  
Alternative Hypotheses ◽  
Molecular Components

Soft tissues and cell-like microstructures derived from skeletal elements of a well-preserved Tyrannosaurus rex (MOR 1125) were represented by four components in fragments of demineralized cortical and/or medullary bone: flexible and fibrous bone matrix; transparent, hollow and pliable blood vessels; intravascular material, including in some cases, structures morphologically reminiscent of vertebrate red blood cells; and osteocytes with intracellular contents and flexible filipodia. The present study attempts to trace the occurrence of these four components in bone from specimens spanning multiple geological time periods and varied depositional environments. At least three of the four components persist in some skeletal elements of specimens dating to the Campanian. Fibrous bone matrix is more altered over time in morphology and less likely to persist than vessels and/or osteocytes. Vessels vary greatly in preservation, even within the same specimen, with some regions retaining pliability and other regions almost crystalline. Osteocytes also vary, with some retaining long filipodia and transparency, while others present with short and stubby filipodia and deeply pigmented nuclei, or are pigmented throughout with no nucleus visible. Alternative hypotheses are considered to explain the origin/source of observed materials. Finally, a two-part mechanism, involving first cross-linking of molecular components and subsequent mineralization, is proposed to explain the surprising presence of still -soft elements in fossil bone. These results suggest that present models of fossilization processes may be incomplete and that soft tissue elements may be more commonly preserved, even in older specimens, than previously thought. Additionally, in many cases, osteocytes with defined nuclei are preserved, and may represent an important source for informative molecular data.

scholarly journals Desert Bighorn Sheep: Changes in Genetic Variation Over Time and the Impact of Merging Populations

2014 ◽  
Vol 5 (1) ◽  
pp. 3-13 ◽  
Author(s):  
Philip W. Hedrick ◽  
John D. Wehausen
Keyword(s):  
Genetic Variation ◽  
New Mexico ◽  
Monitoring And Evaluation ◽  
Bighorn Sheep ◽  
Ovis Canadensis ◽  
Mexican Population ◽  
Desert Bighorn Sheep ◽  
Two Generations ◽  
The Impact ◽  
Over Time

Abstract Founder effects, genetic bottlenecks, and genetic drift in general can lead to low levels of genetic diversity, which can influence the persistence of populations. We examine genetic variation in two populations of desert bighorn sheep Ovis canadensis from New Mexico and Mexico to measure change over time and evaluate the impact of introducing individuals from one population into the other. Over about three generations, the amount of genetic variation in the New Mexico population increased. In contrast, over about two generations the amount of genetic variation in the Mexican population decreased by a great extent compared with an estimate from another Mexican population from which it is primarily descended. The potential reasons for these changes are discussed. In addition, although both populations have low genetic variation, introduction of Mexican rams into the New Mexico population might increase the amount of genetic variation in the New Mexico population. Overall, it appears that management to increase genetic variation might require substantial detailed monitoring and evaluation of ancestry from the different sources and fitness components.

scholarly journals Characterizing the oligogenic architecture of plant growth phenotypes informs genomic selection approaches in a common wheat population

BMC Genomics ◽  
2021 ◽  
Vol 22 (1) ◽  
Author(s):  
Noah DeWitt ◽  
Mohammed Guedira ◽  
Edwin Lauer ◽  
J. Paul Murphy ◽  
David Marshall ◽  
...  
Keyword(s):  
Genetic Variation ◽  
Plant Growth ◽  
Genomic Selection ◽  
Plant Height ◽  
Prediction Models ◽  
Growth Traits ◽  
Heading Date ◽  
Additive Genetic Variation ◽  
Moderate Effect ◽  
Over Time

Abstract Background Genetic variation in growth over the course of the season is a major source of grain yield variation in wheat, and for this reason variants controlling heading date and plant height are among the best-characterized in wheat genetics. While the major variants for these traits have been cloned, the importance of these variants in contributing to genetic variation for plant growth over time is not fully understood. Here we develop a biparental population segregating for major variants for both plant height and flowering time to characterize the genetic architecture of the traits and identify additional novel QTL. Results We find that additive genetic variation for both traits is almost entirely associated with major and moderate-effect QTL, including four novel heading date QTL and four novel plant height QTL. FT2 and Vrn-A3 are proposed as candidate genes underlying QTL on chromosomes 3A and 7A, while Rht8 is mapped to chromosome 2D. These mapped QTL also underlie genetic variation in a longitudinal analysis of plant growth over time. The oligogenic architecture of these traits is further demonstrated by the superior trait prediction accuracy of QTL-based prediction models compared to polygenic genomic selection models. Conclusions In a population constructed from two modern wheat cultivars adapted to the southeast U.S., almost all additive genetic variation in plant growth traits is associated with known major variants or novel moderate-effect QTL. Major transgressive segregation was observed in this population despite the similar plant height and heading date characters of the parental lines. This segregation is being driven primarily by a small number of mapped QTL, instead of by many small-effect, undetected QTL. As most breeding populations in the southeast U.S. segregate for known QTL for these traits, genetic variation in plant height and heading date in these populations likely emerges from similar combinations of major and moderate effect QTL. We can make more accurate and cost-effective prediction models by targeted genotyping of key SNPs.

Landscape Heterogeneity and Dynamics

2019 ◽  
pp. 42-126
Author(s):  
Kimberly A. With
Keyword(s):  
Landscape Ecology ◽  
Spatial Heterogeneity ◽  
Landscape Structure ◽  
Landscape Heterogeneity ◽  
Spatial Scales ◽  
Anthropogenic Disturbances ◽  
Ecological Processes ◽  
Disturbance Dynamics ◽  
Wide Range ◽  
Over Time

Heterogeneity is a defining characteristic of landscapes and therefore central to the study of landscape ecology. Landscape ecology investigates what factors give rise to heterogeneity, how that heterogeneity is maintained or altered by natural and anthropogenic disturbances, and how heterogeneity ultimately influences ecological processes and flows across the landscape. Because heterogeneity is expressed across a wide range of spatial scales, the landscape perspective can be applied to address these sorts of questions at any level of ecological organization, and in aquatic and marine systems as well as terrestrial ones. Disturbances—both natural and anthropogenic—are a ubiquitous feature of any landscape, contributing to its structure and dynamics. Although the focus in landscape ecology is typically on spatial heterogeneity, disturbance dynamics produce changes in landscape structure over time as well as in space. Heterogeneity and disturbance dynamics are thus inextricably linked and are therefore covered together in this chapter.

scholarly journals How predictable is extinction? Forecasting species survival at million-year timescales

2019 ◽  
Vol 374 (1788) ◽  
pp. 20190392 ◽  
Author(s):  
Peter Smits ◽  
Seth Finnegan
Keyword(s):  
Fossil Record ◽  
Human Impacts ◽  
Rank Order ◽  
Extinction Risk ◽  
Geographical Range ◽  
The Past ◽  
The Future ◽  
Out Of Sample ◽  
Extinction Events ◽  
Over Time

A tenet of conservation palaeobiology is that knowledge of past extinction patterns can help us to better predict future extinctions. Although the future is unobservable, we can test the strength of this proposition by asking how well models conditioned on past observations would have predicted subsequent extinction events at different points in the geological past. To answer this question, we analyse the well-sampled fossil record of Cenozoic planktonic microfossil taxa (Foramanifera, Radiolaria, diatoms and calcareous nanoplankton). We examine how extinction probability varies over time as a function of species age, time of observation, current geographical range, change in geographical range, climate state and change in climate state. Our models have a 70–80% probability of correctly forecasting the rank order of extinction risk for a random out-of-sample species pair, implying that determinants of extinction risk have varied only modestly through time. We find that models which include either historical covariates or account for variation in covariate effects over time yield equivalent forecasts, but a model including both is overfit and yields biased forecasts. An important caveat is that human impacts may substantially disrupt range-risk dynamics so that the future will be less predictable than it has been in the past. This article is part of a discussion meeting issue ‘The past is a foreign country: how much can the fossil record actually inform conservation?’

Spatiotemporal palaeodiversity patterns of modern crocodiles (Crocodyliformes: Eusuchia)

2019 ◽  
Vol 189 (2) ◽  
pp. 635-656 ◽  
Author(s):  
Ane De Celis ◽  
Iván Narváez ◽  
Francisco Ortega
Keyword(s):  
South America ◽  
Least Squares ◽  
Late Miocene ◽  
North American ◽  
Fossil Record ◽  
Generalized Least Squares ◽  
Global Scale ◽  
Biotic Factors ◽  
Species Dynamics ◽  
Over Time

Abstract Eusuchia is a crocodyliform clade with a rich and diverse fossil record dating back to the Mesozoic. There are several recent studies that analyse crocodyliform palaeodiversity over time, but none of them focuses exclusively on eusuchians. Thus, we estimated subsampled eusuchian palaeodiversity species dynamics over time not only at a global scale, but also by continents and main crocodylian lineages (Alligatoroidea, Crocodyloidea and Gavialoidea). These estimates reveal complex spatiotemporal palaeodiversity patterns, in which two maxima can be detected: the first during the Palaeocene and the second, which is also the biggest, in the middle-late Miocene. The Palaeocene shift is related to a North American alligatoroid diversification, whereas the middle–late Miocene maximum is related to a diversification of the three main Crocodylia lineages in Gondwanan land masses, but especially in South America. Additionally, a model-based study using generalized least squares was carried out to analyse the relationships between different abiotic and sampling proxies and eusuchian palaeodiversity. The results show that palaeotemperature is the most important factor amongst the analysed proxies, in accordance with previous studies. However, the results suggest that, along with palaeotemperature, other abiotic and/or biotic factors might also be driving eusuchian palaeodiversity dynamics.

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