Variation, mosaicism and degeneracy in the hominin foot.

The fossil record is scarce and incomplete by nature. Animals and ecological processes devour soft tissue and important bony details over time and, when the dust settles, we are faced with a patchy record full of variation. Fossil taxa are usually defined by craniodental characteristics, so unless postcranial bones are found associated with a skull, assignment to taxon is unstable. Naming a locomotor category based on fossil bone morphology by analogy to living hominoids is not uncommon, and when no single locomotor label fits, postcrania are often described as exhibiting a “mosaic” of traits. Here, we contend that the unavoidable variation that characterises the fossil record can be described far more rigorously based on extensive work in human neurobiology and neuroanatomy, movement sciences and motor control and biomechanics research. In neurobiology, degeneracy is a natural mechanism of adaptation allowing system elements that are structurally different to perform the same function. This concept differs from redundancy as understood in engineering, where the same function is performed by identical elements. Assuming degeneracy, structurally different elements are able to produce different outputs in a range of environmental contexts, favouring ecological robusticity by enabling adaptations. Furthermore, as degeneracy extends to genome level, genetic variation is sustained, so that genes which might benefit an organism in a different environment remain part of the genome, favouring species’ evolvability.

Putative fossil blood cells reinterpreted as diagenetic structures

Red to red-orange spheres in the vascular canals of fossil bone thin sections have been repeatedly reported using light microscopy. Some of these have been interpreted as the fossilized remains of blood cells or, alternatively, pyrite framboids. Here, we assess claims of blood cell preservation within bones of the therizinosauroid theropod Beipiaosaurus inexpectus from the Jehol Lagerstätte. Using Raman spectroscopy, Energy Dispersive X-ray Spectrometry, and Time of Flight Secondary Ion Mass Spectroscopy, we found evidence of high taphonomic alteration of the bone. We also found that the vascular canals in the bone, once purported to contain fossil red blood cell, are filled with a mix of clay minerals and carbonaceous compounds. The spheres could not be analyzed in isolation, but we did not find any evidence of pyrite or heme compounds in the vessels, surrounding bone, or matrix. However, we did observe similar spheres under light microscopy in petrified wood found in proximity to the dinosaur. Consequently, we conclude that the red spheres are most likely diagenetic structures replicated by the clay minerals present throughout the vascular canals.

Molecular preservation in mammoth bone and variation based on burial environment

Biomolecules preserved in fossils are expanding our understanding of the biology and evolution of ancient animals. Molecular taphonomy seeks to understand how these biomolecules are preserved and how they can be interpreted. So far, few studies on molecular preservation have considered burial context to understand its impact on preservation or the potentially complementary information from multiple biomolecular classes. Here, we use mass spectrometry and other analytical techniques to detect the remains of proteins and lipids within intact fossil mammoth bones of different ages and varied depositional setting. By combining these approaches, we demonstrate that endogenous amino acids, amides and lipids can preserve well in fossil bone. Additionally, these techniques enable us to examine variation in preservation based on location within the bone, finding dense cortical bone better preserves biomolecules, both by slowing the rate of degradation and limiting the extent of exogenous contamination. Our dataset demonstrates that biomolecule loss begins early, is impacted by burial environment and temperature, and that both exogenous and endogenous molecular signals can be both present and informative in a single fossil.

Diagenetic processes in Quaternary fossil bones from tropical limestone caves

Quaternary fossils from limestone caves bear various diagenetic features due to the complex nature of sedimentary processes. However, few studies have addressed the problem of diagenetic changes in fossils from tropical-wet environments. We study Quaternary fossil bones from different sites of a tropical limestone cave in northeastern Brazil. These fossils show diverse diagenetic features. The approach encompassed the use of scanning electron microscopy, Raman spectroscopy, and X-ray diffraction to understand the modification of the fossil bone structure, chemical composition, and mineral assemblage during the diagenesis processes. We describe a model for fossil diagenesis in tropical limestone caves that involves early and advanced diagenetic stages, which produce two routes with different endmembers. The diagenesis in the cave alters the crystallinity and ordering of hydroxyapatite. The recrystallization of hydroxyapatite appears to be strongly influenced by dripping water that is rich in calcium carbonate, which leads to crystal formation with higher crystallinity. In the absence of calcium carbonate, hydroxyapatite diagenesis involves crystal growth but not necessarily dissolution of the original material, which enables remarkable preservation of the biological structure.

Molecular tests support the viability of rare earth elements as proxies for fossil biomolecule preservation

The rare earth element (REE) composition of a fossil bone reflects its chemical alteration during diagenesis. Consequently, fossils presenting low REE concentrations and/or REE profiles indicative of simple diffusion, signifying minimal alteration, have been proposed as ideal candidates for paleomolecular investigation. We directly tested this prediction by conducting multiple biomolecular assays on a well-preserved fibula of the dinosaur Edmontosaurus from the Cretaceous Hell Creek Formation previously found to exhibit low REE concentrations and steeply-declining REE profiles. Gel electrophoresis identified the presence of organic material in this specimen, and subsequent immunofluorescence and enzyme-linked immunosorbant assays identified preservation of epitopes of the structural protein collagen I. Our results thereby support the utility of REE profiles as proxies for soft tissue and biomolecular preservation in fossil bones. Based on considerations of trace element taphonomy, we also draw predictions as to the biomolecular recovery potential of additional REE profile types exhibited by fossil bones.

Far-flung female (and fossil bone hunting) Fellows: an autoethnographical approach

Geologists roam worldwide; no less for women who took up fellowship of the ‘Geol. Soc.’. Since 1919, women Fellows of the Geological Society have lived and worked across the globe conducting fieldwork and research. Based on the author's interests and in part considering her 50 years an FGS, a selection of women Fellows is considered, many of whom affected her geological life, such as Phoebe Walder and Peigi Wallace. This autoethnographical approach encompasses women from the colonies who joined as soon as they were able; the legendary Dorothy Hill of Queensland was one of the first, with other notable Australians being Nell Ludbrook and June Phillips Ross. Others worked across the former Gondwana, such as Pamela Robinson, who pioneered much research in vertebrate palaeontology on the Indian subcontinent. Important British geologists and vertebrate palaeontologists include Dorothea Bate, Sonia Cole, Elinor Gardner and Eileen Hendriks, who wrote key geological texts in the earlier twentieth century. More contemporary women did work for UNESCO, the International Union of Geological Sciences and in the oil industry. During the later twentieth and early twenty-first centuries, female Fellows have worked across the world in greater numbers in all aspects of geoscience, from the Arctic to the Antarctic.

TIPZOO: a Touchscreen Interface for Palaeolithic Zooarchaeology. Towards making data entry and analysis easier, faster, and more reliable

Zooarchaeological studies of fossil bone collections are often conducted using simple spreadsheet programs for data recording and analysis. After quickly summarizing the limitations of such an approach, we present a new software solution, TIPZOO, which uses a FileMaker touchscreen interface combined with R scripts and QGIS files. This tool was specifically designed for zooarchaeologists’ needs, and is freely available at http://tipzoo.cnrs.fr. In this article, the key features of TIPZOO are highlighted, and we present some of the tools developed in order to (1) simplify the use of recently published complex coding systems, (2) better control intra- and inter-analyst variation, and (3) allow faster and more reliable data entry, analysis and visualization in Palaeolithic zooarchaeology.

TRACKING AUTHIGENIC MINERAL CEMENTS IN FOSSIL BONES FROM THE UPPER CRETACEOUS (CAMPANIAN) TWO MEDICINE AND JUDITH RIVER FORMATIONS, MONTANA

ABSTRACT Previous studies have yielded mixed results as to whether authigenic mineral infill in fossilized bone tracks specific lithologies or depositional environments, with most suggesting weak to no correlation between infill composition and host lithofacies. This study documents infill patterns in a suite of fossil bones from the Upper Cretaceous Two Medicine and Judith River formations of Montana. The composition and distribution of void-filling materials, including authigenic mineral precipitates (e.g., calcite, chlorite, iron oxides/hydroxides, sulfides, and sulfates) and sedimentary detritus, were identified (petrography and SEM-EDS), imaged (photomicrographs, BSE maps), and quantified on false color maps using ImageJ. The authigenic cement content of fossil bone is distinct at the formation scale, with Two Medicine specimens characterized by pervasive calcite infill (non-ferroan followed by ferroan phase) and local chlorite infill. In contrast, Judith River specimens are characterized by abundant unfilled primary void space, with iron oxides and sulfides, along with rare sulfates, present in all bones, albeit in low abundance. Calcite infills are rare, chlorite is absent, and detrital infill is more abundant in Judith River specimens, presumably reflecting the rapid and more complete permineralization of Two Medicine bones. The sequencing of mineral cements in voids is generally consistent within formations, but is more complex in Two Medicine specimens. Authigenic cement content does not serve to effectively distinguish among facies or localities in either formation. This study compliments previous work on rare earth element (REE) content in the same general suite of fossil bones. In the previous study, patterns in REE uptake also served to readily distinguish fossils at the formation scale, and proved more effective than authigenic cements at differentiating fossils recovered from different facies.