scholarly journals A prognostic dynamic model applicable to infectious diseases providing easily visualized guides: a case study of COVID-19 in the UK

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Yuxuan Zhang ◽  
Chen Gong ◽  
Dawei Li ◽  
Zhi-Wei Wang ◽  
Shengda D. Pu ◽  
...  

AbstractA reasonable prediction of infectious diseases’ transmission process under different disease control strategies is an important reference point for policy makers. Here we established a dynamic transmission model via Python and realized comprehensive regulation of disease control measures. We classified government interventions into three categories and introduced three parameters as descriptions for the key points in disease control, these being intraregional growth rate, interregional communication rate, and detection rate of infectors. Our simulation predicts the infection by COVID-19 in the UK would be out of control in 73 days without any interventions; at the same time, herd immunity acquisition will begin from the epicentre. After we introduced government interventions, a single intervention is effective in disease control but at huge expense, while combined interventions would be more efficient, among which, enhancing detection number is crucial in the control strategy for COVID-19. In addition, we calculated requirements for the most effective vaccination strategy based on infection numbers in a real situation. Our model was programmed with iterative algorithms, and visualized via cellular automata; it can be applied to similar epidemics in other regions if the basic parameters are inputted, and is able to synthetically mimic the effect of multiple factors in infectious disease control.

2016 ◽  
Vol 144 (16) ◽  
pp. 3554-3563 ◽  
Author(s):  
A. E. HEYWOOD ◽  
N. ZWAR ◽  
B. L. FORSSMAN ◽  
H. SEALE ◽  
N. STEPHENS ◽  
...  

SUMMARYImmigrants and their children who return to their country of origin to visit friends and relatives (VFR) are at increased risk of acquiring infectious diseases compared to other travellers. VFR travel is an important disease control issue, as one quarter of Australia's population are foreign-born and one quarter of departing Australian international travellers are visiting friends and relatives. We conducted a 1-year prospective enhanced surveillance study in New South Wales and Victoria, Australia to determine the contribution of VFR travel to notifiable diseases associated with travel, including typhoid, paratyphoid, measles, hepatitis A, hepatitis E, malaria and chikungunya. Additional data on characteristics of international travel were collected. Recent international travel was reported by 180/222 (81%) enhanced surveillance cases, including all malaria, chikungunya and paratyphoid cases. The majority of cases who acquired infections during travel were immigrant Australians (96, 53%) or their Australian-born children (43, 24%). VFR travel was reported by 117 (65%) travel-associated cases, highest for typhoid (31/32, 97%). Cases of children (aged <18 years) (86%) were more frequently VFR travellers compared to adult travellers (57%,P< 0·001). VFR travel is an important contributor to imported disease in Australia. Communicable disease control strategies targeting these travellers, such as targeted health promotion, are likely to impact importation of these travel-related infections.


Animals ◽  
2022 ◽  
Vol 12 (2) ◽  
pp. 192
Author(s):  
Stuart J. Patterson ◽  
Tim H. Clutton-Brock ◽  
Dirk U. Pfeiffer ◽  
Julian A. Drewe

Individuals vary in their potential to acquire and transmit infections, but this fact is currently underexploited in disease control strategies. We trialled a trait-based vaccination strategy to reduce tuberculosis in free-living meerkats by targeting high-contact meerkats (socially dominant individuals) in one study arm, and high-susceptibility individuals (young subordinates) in a second arm. We monitored infection within vaccinated groups over two years comparing the results with untreated control groups. Being a member of a high-contact group had a protective effect on individuals’ survival times (Hazard Ratio = 0.5, 95% Confidence Interval, CI: 0.29–0.88, p = 0.02) compared to control groups. Over the study, odds of testing positive for tuberculosis increased more than five-fold in control groups (Odds Ratio = 5.40, 95% CI = 0.94–30.98, p = 0.058); however, no increases were observed in either of the treatment arms. Targeted disease control approaches, such as the one described in this study, allow for reduced numbers of interventions. Here, trait-based vaccination was associated with reduced infection rates and thus has the potential to offer more efficient alternatives to traditional mass-vaccination policies. Such improvements in efficiency warrant further study and could make infectious disease control more practically achievable in both animal (particularly wildlife) and human populations.


2021 ◽  
Author(s):  
Kian Boon Law ◽  
Kalaiarasu M. Peariasamy ◽  
Hishamshah Mohd. Ibrahim ◽  
Noor Hisham Abdullah

Abstract Background The conventional susceptible-infectious-recovered (SIR) model tends to overestimate the transmission dynamics of infectious diseases and ends up with total infections and total immunized population exceeding the threshold required for control and eradication of infectious diseases. The study aims to overcome the limitation by allowing the transmission rate of infectious disease to decline along with the reducing risk of contact infection. Methods Two new SIR models were developed to mimic the declining transmission rate of infectious diseases at different stages of transmission. Model A mimicked the declining transmission rate along with the reducing risk of transmission following infection, while Model B mimicked the declining transmission rate following recovery. Then, the conventional SIR model, Model A and Model B were used to simulate an infectious disease with a basic reproduction number (r0) of 3.0 and a herd immunity threshold (HIT) of 0.667 with and without vaccination. The infectious disease was expected to be controlled or eradicated when the total immunized population either through infection or vaccination reached the level predicted by the HIT. Outcomes of simulations were assessed at the time when the total immunized population reached the level predicted by the HIT, and at the end of simulations. Findings All three models performed likewise at the beginning of the transmission when sizes of infectious and recovered were relatively small as compared with the population size. The infectious disease modelled using the conventional SIR model appeared completely out of control even when the HIT was achieved in all scenarios with and without vaccination. The infectious disease modelled using Model A appeared to be controlled at the level predicted by the HIT in all scenarios with and without vaccination. Model B projected the infectious disease to be controlled at the level predicted by the HIT only at high vaccination rates. At lower vaccination rates or without vaccination, the level at which the infectious disease was controlled cannot be accurately predicted by the HIT. Conclusion Transmission dynamics of infectious diseases with herd immunity can accurately be modelled by allowing the transmission rate of infectious disease to decline along with the combined risk of contact infection. Model B provides a more credible framework for modelling infectious diseases with herd immunity in a randomly mixed population.


2013 ◽  
Vol 40 (5) ◽  
pp. 367 ◽  
Author(s):  
Lucy G. Anderson ◽  
Christian Gortázar ◽  
Joaquin Vicente ◽  
Michael R. Hutchings ◽  
Piran C. L. White

Context Bovine tuberculosis is a persistent disease of livestock in many parts of the world, especially where wildlife hosts co-exist with livestock. In south-western Spain, despite the widespread implementation of test-and-cull strategies for cattle, the herd prevalence in areas with high wild boar densities remains stable. The control of M. bovis infection in wild boar is likely to be essential for effective disease control in livestock. Methods We developed an individual-based model to evaluate whether vaccinating wild boar piglets with oral bait would be an effective strategy to reduce the prevalence of M. bovis infection in wild boar populations. Specifically, we quantified the proportion of piglets requiring vaccination and the number of years the vaccination programme would need to continue to eradicate bTB from wild boar within 25 years, comparing ‘managed’ populations on hunting estates where supplementary food is provided, with ‘unmanaged’, free-living populations. Successful vaccination was defined as the proportion of piglets that were delivered the vaccine and were effectively protected from infection. Key results Longer-term (25-year) vaccination strategies were more successful than short-term (5-year) strategies at either eradicating M. bovis or reducing it to below 90% of its original prevalence. M. bovis infection could be eradicated under a 25-year vaccination strategy if 80% of piglets were vaccinated in a managed population or 70% of piglets were vaccinated in an unmanaged population. In contrast, 5-year strategies in which 80% of piglets were vaccinated reduced the prevalence of M. bovis only by 27% or 8% in the managed and unmanaged populations, respectively. Conclusions The results of our simulation model, coupled with the promising results of initial vaccine and oral bait-uptake trials in wild boar indicated that vaccination could be an effective strategy to reduce the prevalence of M. bovis infection in wild boar if used in conjunction with other disease-control measures. Implications The vaccination of piglets over a long-term period has the potential to make an important contribution to the eradication of M. bovis infection from wild boar reservoirs in southern Spain.


Animals ◽  
2021 ◽  
Vol 11 (7) ◽  
pp. 1876
Author(s):  
Salleh Annas ◽  
Mohd Zamri-Saad

The world is currently facing an ongoing coronavirus disease 2019 (COVID-19) pandemic. The disease is a highly contagious respiratory disease which is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Current control measures used by many countries include social distancing, wearing face masks, frequent hand washing, self-isolation, and vaccination. The current commercially available vaccines are injectable vaccines, although a few intranasal vaccines are in trial stages. The reported side effects of COVID-19 vaccines, perceptions towards the safety of the vaccines, and frequent mutation of the virus may lead to poor herd immunity. In veterinary medicine, attaining herd immunity is one of the main considerations in disease control, and herd immunity depends on the use of efficacious vaccines and the vaccination coverage in a population. Hence, many aerosol or intranasal vaccines have been developed to control veterinary respiratory diseases such as Newcastle disease, rinderpest, infectious bronchitis, and haemorrhagic septicaemia. Different vaccine technologies could be employed to improve vaccination coverage, including the usage of an intranasal live recombinant vaccine or live mutant vaccine. This paper discusses the potential use of intranasal vaccination strategies against human COVID-19, based on a veterinary intranasal vaccine strategy.


Livestock ◽  
2019 ◽  
Vol 24 (3) ◽  
pp. 137-141
Author(s):  
R J Sibley

Bovine tuberculosis is a major economic problem for the cattle farmers of the UK, particularly the endemically infected are as of the south and west. Attempts at eradication have failed to effectively control the disease: of farms that suffer a breakdown and are then deemed clear of disease, more than half will suffer recurrence of the disease within 3 years, while a significant number of farms remain chronically infected. These herds provide a major reservoir of infection and robust, farm specific, disease control strategies are required to manage the disease from them, economically and sustainably. Novel technologies in surveillance, resilience and risk management are required to effectively control bovine tuberculosis in these endemically infected herds.


Author(s):  
Nicholas G. Davies ◽  
Adam J. Kucharski ◽  
Rosalind M. Eggo ◽  
Amy Gimma ◽  
W. John Edmunds ◽  
...  

AbstractBackgroundNon-pharmaceutical interventions have been implemented to reduce transmission of SARS-CoV-2 in the UK. Projecting the size of an unmitigated epidemic and the potential effect of different control measures has been critical to support evidence-based policymaking during the early stages of the epidemic.MethodsWe used a stochastic age-structured transmission model to explore a range of intervention scenarios, including the introduction of school closures, social distancing, shielding of elderly groups, self-isolation of symptomatic cases, and extreme “lockdown”-type restrictions. We simulated different durations of interventions and triggers for introduction, as well as combinations of interventions. For each scenario, we projected estimated new cases over time, patients requiring inpatient and critical care (intensive care unit, ICU) treatment, and deaths.FindingsWe found that mitigation measures aimed at reducing transmission would likely have decreased the reproduction number, but not sufficiently to prevent ICU demand from exceeding NHS availability. To keep ICU bed demand below capacity in the model, more extreme restrictions were necessary. In a scenario where “lockdown”-type interventions were put in place to reduce transmission, these interventions would need to be in place for a large proportion of the coming year in order to prevent healthcare demand exceeding availability.InterpretationThe characteristics of SARS-CoV-2 mean that extreme measures are likely required to bring the epidemic under control and to prevent very large numbers of deaths and an excess of demand on hospital beds, especially those in ICUs.Research in ContextEvidence before this studyAs countries have moved from early containment efforts to planning for the introduction of large-scale non-pharmaceutical interventions to control COVID-19 outbreaks, epidemic modelling studies have explored the potential for extensive social distancing measures to curb transmission. However, it remains unclear how different combinations of interventions, timings, and triggers for the introduction and lifting of control measures may affect the impact of the epidemic on health services, and what the range of uncertainty associated with these estimates would be.Added value of this studyUsing a stochastic, age-structured epidemic model, we explored how eight different intervention scenarios could influence the number of new cases and deaths, as well as intensive care beds required over the projected course of the epidemic. We also assessed the potential impact of local versus national targeting of interventions, reduction in leisure events, impact of increased childcare by grandparents, and timing of triggers for different control measures. We simulated multiple realisations for each scenario to reflect uncertainty in possible epidemic trajectories.Implications of all the available evidenceOur results support early modelling findings, and subsequent empirical observations, that in the absence of control measures, a COVID-19 epidemic could quickly overwhelm a healthcare system. We found that even a combination of moderate interventions – such as school closures, shielding of older groups and self-isolation – would be unlikely to prevent an epidemic that would far exceed available ICU capacity in the UK. Intermittent periods of more intensive lockdown-type measures are predicted to be effective for preventing the healthcare system from being overwhelmed.


Author(s):  
Kiesha Prem ◽  
Yang Liu ◽  
Timothy W Russell ◽  
Adam J Kucharski ◽  
Rosalind M Eggo ◽  
...  

AbstractBACKGROUNDIn December 2019, a novel strain of SARS-CoV-2 emerged in Wuhan, China. Since then, the city of Wuhan has taken unprecedented measures and efforts in response to the outbreak.METHODSWe quantified the effects of control measures on population contact patterns in Wuhan, China, to assess their effects on the progression of the outbreak. We included the latest estimates of epidemic parameters from a transmission model fitted to data on local and internationally exported cases from Wuhan in the age-structured epidemic framework. Further, we looked at the age-distribution of cases. Lastly, we simulated lifting of the control measures by allowing people to return to work in a phased-in way, and looked at the effects of returning to work at different stages of the underlying outbreak.FINDINGSChanges in mixing patterns may have contributed to reducing the number of infections in mid-2020 by 92% (interquartile range: 66–97%). There are benefits to sustaining these measures until April in terms of reducing the height of the peak, overall epidemic size in mid-2020 and probability that a second peak may occur after return to work. However, the modelled effects of social distancing measures vary by the duration of infectiousness and the role school children play in the epidemic.INTERPRETATIONRestrictions on activities in Wuhan, if maintained until April, would likely contribute to the reduction and delay the epidemic size and peak, respectively. However, there are some limitations to the analysis, including large uncertainties around estimates of R0 and the duration of infectiousness.FUNDINGBill and Melinda Gates Foundation, National Institute for Health Research, Wellcome Trust, and Health Data Research UK.


2021 ◽  
Author(s):  
Kian Boon Law ◽  
Kalaiarasu M Peariasamy ◽  
Hishamshah Ibrahim ◽  
Noor Hisham Abdullah

Abstract Background The conventional susceptible-infectious-recovered (SIR) model tends to overestimate transmission dynamics of infectious diseases and ends up with total infections exceeding the threshold required for control and eradication of infectious diseases. The study aims to overcome the limitation by allowing the transmission rate of infectious disease to decline along with the reducing risk of contact infection. MethodsTwo new SIR models were developed to mimic the declining transmission rate of infectious diseases at different stages of transmission. Model A mimicked the declining transmission rate along with the reducing risk of transmission following infection, while Model B mimicked the declining transmission rate following recovery. Then, the conventional SIR model, Model A and Model B were used to simulate an infectious disease with a basic reproduction number (r0) of 3.0 and a herd immunity threshold (HIT) of 0.667 with and without vaccination. The infectious disease was expected to be controlled or eradicated when the total immunized population either through infection or vaccination reached the level predicted by the HIT. Outcomes of simulations were assessed at the time when the total immunized population reached the level predicted by the HIT, and at the end of simulations.Findings All three models performed likewise at the beginning of transmission when sizes of infectious and recovered were relatively small as compared with the population size. The infectious disease modelled using the conventional SIR model appeared completely out of control even when the HIT was achieved in all scenarios with and without vaccination. The infectious disease modelled using Model A appeared to be controlled at the level predicted by the HIT in all scenarios with and without vaccination. Model B projected the infectious disease to be controlled at the level predicted by the HIT only at high vaccination rates. At lower vaccination rates or without vaccination, the level at which the infectious disease was controlled cannot be accurately predicted by the HIT. ConclusionTransmission dynamics of infectious diseases with herd immunity can accurately be modelled by allowing the transmission rate of infectious disease to decline along with the combined risk of contact infection. Model B provides a more realistic framework for modelling infectious diseases with herd immunity in a randomly mixed population.


2021 ◽  
pp. 597-622
Author(s):  
Robert J. Kim-Farley

Infectious diseases remain a leading cause of morbidity, disability, and mortality worldwide. Lower respiratory infections are the third leading causes of death worldwide and their control is a constant challenge that faces health workers and public health officials in both industrialized and developing countries. This chapter provides a global and comprehensive view of the principles of infectious disease control through examination of the magnitude of disease burden, the chain of infection (agent, transmission, and host) of infectious diseases, the varied approaches to their prevention and control (measures applied to the host, vectors, infected humans, animals, environment, and agents), and the factors conducive to their eradication as well as emergence and re-emergence.


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