scholarly journals Developmental regulation of a proinsulin messenger RNA generated by intron retention

EMBO Reports ◽  
2005 ◽  
Vol 6 (12) ◽  
pp. 1182-1187 ◽  
Author(s):  
Alicia Mansilla ◽  
Carmen López‐Sánchez ◽  
Enrique J de la Rosa ◽  
Virginio García‐Martínez ◽  
Encarna Martínez‐Salas ◽  
...  
2016 ◽  
Vol 17 (12) ◽  
pp. 2145 ◽  
Author(s):  
Maria Esposito ◽  
Marcella Nunziato ◽  
Flavio Starnone ◽  
Antonella Telese ◽  
Alessandra Calabrese ◽  
...  

2021 ◽  
Author(s):  
Wei Cao ◽  
Christopher Tran ◽  
Stuart K Archer ◽  
Sandeep Gopal ◽  
Roger Pocock

Splicing introns from precursor-messenger RNA (pre-mRNA) transcripts is essential for translating functional proteins. Here, we report that the previously uncharacterized Caenorhabditis elegans protein MOG-7, acts as a pre-mRNA splicing factor. Depleting MOG-7 from the C. elegans germ line causes intron retention in the majority of germline-expressed genes, impeding the germ cell cycle, and causing defects in nuclear morphology, germ cell identity and sterility. Despite the deleterious consequences caused by MOG-7 loss, the adult germ line can functionally recover to produce viable and fertile progeny when MOG-7 is restored. Germline recovery is dependent on a burst of apoptosis that likely clears defective germ cells, and viable gametes generated from the proliferation of germ cells in the progenitor zone. Together, these findings reveal that MOG-7 is essential for germ cell development, and that the germ line is able to functionally recover after a collapse in RNA splicing.


1984 ◽  
Vol 99 (6) ◽  
pp. 1927-1935 ◽  
Author(s):  
J C Havercroft ◽  
D W Cleveland

We have previously demonstrated that the chicken genome contains at least four different, functional beta-tubulin genes. By using gene specific probes we have now analyzed the relative levels of expression of the four encoded messenger RNA (mRNA) transcripts as a function of chicken development and differentiation. We have found that the RNA transcript from the beta 2 gene is present in large amounts in embryonic chick brain and is also preferentially expressed in spinal cord neurons, indicating that this transcript encodes the dominant neuronal beta-tubulin polypeptide. The beta 3 mRNA is present in overwhelming amounts in RNA from chicken testis suggesting that this gene encodes a flagellar or meiotic spindle tubulin. However, both of these genes are transcribed to varying, but lesser, degrees in a number of additional cell and tissue types indicating that they are not neuronal or testis specific, respectively. Beta 4' transcripts are present at moderate levels in all cell and tissue types examined, suggesting that this mRNA encodes a constitutive beta-tubulin polypeptide that is involved in an essential or housekeeping microtubule function. Transcripts from the beta 1 gene are a minor component of the beta-tubulin mRNA populations in all cells and tissues tested. Overall, we conclude that specific beta-tubulin mRNA species are expressed in markedly different ratios in different tissues in the chicken. Such developmental regulation may reflect the function(s) of the individual beta-tubulin polypeptides or, alternatively, may be required for precise control of tubulin gene expression in cells that utilize microtubules for divergent purposes.


2020 ◽  
Author(s):  
Kyu-Hyeon Yeom ◽  
Zhicheng Pan ◽  
Chia-Ho Lin ◽  
Hanyoung Lim ◽  
Wen Xiao ◽  
...  

SUMMARYTo globally assess the distribution and processing of gene transcripts across subcellular compartments, we developed extensive RNA-seq datasets of both polyA+ and total RNA from chromatin, nucleoplasm and cytoplasm of mouse ESC, neuronal progenitors, and neurons. We identified protein-coding genes whose polyadenylated transcripts were more abundant in chromatin than cytoplasm. We defined introns exhibiting cotranscriptional splicing, complete intron retention in cytoplasmic RNA, and many introns retained in nucleoplasmic and chromatin RNA but absent from cytoplasmic RNA, including new introns controlled during neuronal development. In particular, we found that polyadenylated Gabbr1 transcripts are expressed in mESC but remain sequestered on chromatin until neuronal differentiation when they are processed and released to the cytoplasm. This developmental regulation of splicing and chromatin association demonstrates that the abundance of polyadenylated RNA is not always an indicator of functional gene expression. Our datasets provide a rich resource for analyzing many other aspects of mRNA maturation.


2021 ◽  
Author(s):  
Chao Liang ◽  
Qiang Cai ◽  
Shaofang Li ◽  
Chenjiang You ◽  
Chi Xu ◽  
...  

Abstract MicroRNAs (miRNAs) play crucial roles in gene expression regulation through RNA cleavage or translation repression. Although miRNA biogenesis has been extensively studied, new factors involved in miRNA biogenesis are still being found from various genetic screens, suggesting that knowledge of miRNA biogenesis or its regulation is still incomplete. Here, we report the identification of a previously uncharacterized and evolutionarily conserved WD40 domain protein as a player in miRNA biogenesis in Arabidopsis thaliana. A mutation in the REDUCTION IN BLEACHED VEIN AREA (RBV) gene encoding a WD40 domain protein led to the suppression of leaf bleaching caused by an artificial miRNA; the mutation also led to a global reduction in the accumulation of endogenous miRNAs. RBV may act at multiple steps in miRNA biogenesis. RBV promotes the transcription of MIR genes into pri-miRNAs by enhancing the occupancy of RNA polymerase II (Pol II) at MIR gene promoters. The nuclear protein RBV may also participate in pri-miRNA processing, as the mutation of RBV leads to the reduction of dicing body number. Moreover, mutation of RBV leads to a defect of miRNA loading into AGO1.RBV function is required in messenger RNA splicing, as RNA-seq uncovered a global intron retention defect in the mutant. Thus, this previously uncharacterized, evolutionarily conserved, nuclear WD40 domain protein acts in miRNA biogenesis and RNA splicing.


Endocrinology ◽  
1998 ◽  
Vol 139 (7) ◽  
pp. 3165-3177 ◽  
Author(s):  
Delia M. Vázquez ◽  
Juan F. López ◽  
María Inés Morano ◽  
Seung P. Kwak ◽  
Stanley J. Watson ◽  
...  

Abstract Two different types of corticoid receptor molecules bind circulating corticosterone in brain: mineralocorticoid receptors (MR) and glucocorticoid receptors. MR exhibit the highest affinity for the endogenous glucocorticoid in the rat, corticosterone. During development, low corticosterone levels influence neurogenesis, and these effects are probably MR mediated. Three MR complementary DNA clones, α, β, and γ, have been identified in the rodent. All of these MR complementary DNA clones have identical coding regions, but differ significantly at the 5′-untranslated end. Although the functional significance of these three messenger RNA (mRNA) species remains unknown, one hypothesis is that they reflect the ability of the brain to regulate the expression of MR, allowing multiple factors to differentially control transcription in a tissue- and time-specific manner. To investigate this possibility, we examined the presence of these distinct mRNA forms in the developing rat hippocampus (HC). In situ hybridization with specific α, β, and γ complementary RNA probes was performed in the HC of 3-, 5-, 7-, 12-, 14-, 28-, 35-, and 65-day-old animals. We found that there is differential expression of these forms in each of the HC subfields from infancy to adulthood. γ expression appears to be associated with periods of cell birth and increased axonal sprouting. β expression, on the other hand, may be best linked to periods of synaptogenesis, growth of commissural and associative terminal fields, and possibly active pruning. To explore the possibility that the differential gene expression may be related to corticosterone environment, adrenalectomy was performed. A rapid modulation of the MR mRNA variants (14 h) in an age- and site-specific fashion was seen. These findings suggest that the variation in expression and regulation during development of the multiple MR transcripts could reflect a complex pattern of developmental regulation that may involve a multitude of factors unique to each postnatal age and to the different neuronal populations within the hippocampal formation.


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