scholarly journals Reintroductions of birds and mammals involve evolutionarily distinct species at the regional scale

2018 ◽  
Vol 115 (13) ◽  
pp. 3404-3409 ◽  
Author(s):  
Charles Thévenin ◽  
Maud Mouchet ◽  
Alexandre Robert ◽  
Christian Kerbiriou ◽  
François Sarrazin

Reintroductions offer a powerful tool for reversing the effects of species extirpation and have been increasingly used over recent decades. However, this species-centered conservation approach has been criticized for its strong biases toward charismatic birds and mammals. Here, we investigated whether reintroduced species can be representative of the phylogenetic diversity within these two groups at a continental scale (i.e., Europe, North and Central America). Using null models, we found that reintroduced birds and mammals of the two subcontinents tend to be more evolutionarily distinct than expected by chance, despite strong taxonomic biases leading to low values of phylogenetic diversity. While evolutionary considerations are unlikely to have explicitly driven the allocation of reintroduction efforts, our results illustrate an interest of reintroduction practitioners toward species with fewer close relatives. We discuss how this phylogenetic framework allows us to investigate the contribution of reintroductions to the conservation of biodiversity at multiple geographic scales. We argue that because reintroductions rely on a parochial approach of conservation, it is important to first understand how the motivations and constraints at stake at a local context can induce phylogenetic biases before trying to assess the relevance of the allocation of reintroduction efforts at larger scales.

Author(s):  
J.-C. Huang ◽  
X.-Y. Li ◽  
Y.-P. Li ◽  
R.-S. Zhang ◽  
D.-B. Chen ◽  
...  

Samia ricini (Wm. Jones) and Samia cynthia (Drury) (Lepidoptera: Saturniidae) have been used as traditional sources of food as well as silk-producing insects. However, the phylogenetic relationship between the two silkworms remains to be addressed. In this study, the mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequences corresponding to DNA barcodes from 13 Samia species were analysed, and a DNA barcode-based phylogenetic framework for these Samia species was provided. Phylogenetic analysis showed that multiple individuals of a species could be clustered together. Our analysis revealed a close relationship among Samia yayukae Paukstadt, Peigler and Paukstadt, Samia abrerai Naumann and Peigler, Samia kohlli Naumann and Peigler, Samia naessigi Naumann and Peigler, Samia naumanni Paukstadt, Peigler and Paukstadt, and Samia kalimantanensis Paukstadt and Paukstadt. The mixed clustering relationship and low Kimura-2-parameter (K2P) genetic distance (0.006) between individuals of S. ricini and Samia canningi (Hutton) indicated that the cultivated silkworm S. ricini was derived from the non-cultivated silkworm S. canningi. The remote phylogenetic relationship and high K2P genetic distance (0.039) indicated that S. ricini and S. cynthia are distinct species, thus providing solid molecular evidence that they had entirely independent origins. The relationships between S. kalimantanensis and S. naumanni and between S. cynthia and Samia wangi Naumann and Peigler, as well as the potential cryptic species within S. abrerai were also discussed. This is the first study to assess the DNA barcodes of the genus Samia, which supplements the knowledge of species identification and provides the first molecular phylogenetic framework for Samia species.


2021 ◽  
Author(s):  
Gilby Jepson ◽  
Barbara Carrapa ◽  
Jack Gillespie ◽  
Ran Feng ◽  
Peter DeCelles ◽  
...  

<p>Central Asia is one of the most tectonically active and orographically diverse regions in the world and is the location of the highest topography on Earth resulting from major plate tectonic collisional events. Yet the role of tectonics versus climate on erosion remains one of the greatest debates of our time. We present the first regional scale analysis of 2526 published low-temperature thermochronometric dates from Central Asia spanning the Altai-Sayan, Tian Shan, Tibet, Pamir, and Himalaya. We compare these dates to tectonic processes (proximity to tectonic boundaries, crustal thickness, seismicity) and state-of-the-art paleoclimate simulations in order to constrain the relative influences of climate and tectonics on the topographic architecture and erosion of Central Asia. Predominance of pre-Cenozoic ages in much of the interior of central Asia suggests that significant topography was created prior to the India-Eurasia collision and implies limited subsequent erosion. Increasingly young cooling ages are associated with increasing proximity to active tectonic boundaries, suggesting a first-order control of tectonics on erosion. However, areas that have been sheltered from significant precipitation for extensive periods of time retain old cooling ages. This suggests that ultimately climate is the great equalizer of erosion. Climate plays a key role by enhancing erosion in areas with developed topography and high precipitation such as the Tian Shan and Altai-Sayan during the Mesozoic and the Himalaya during the Cenozoic. Older thermochronometric dates are associated with sustained aridity following more humid periods.</p>


2019 ◽  
Author(s):  
Jacob S. Berv ◽  
Leonardo Campagna ◽  
Teresa J. Feo ◽  
Ivandy Castro-Astor ◽  
Camila C. Ribas ◽  
...  

AbstractThe complex landscape history of the Neotropics has generated opportunities for population isolation and subsequent diversification that place this region among the most species-rich in the world. Detailed phylogeographic studies are required to uncover the biogeographic histories of Neotropical taxa, to identify evolutionary correlates of diversity, and to reveal patterns of genetic connectivity, disjunction, and potential differentiation among lineages from different areas of endemism. The White-crowned Manakin (Pseudopipra pipra) is a small suboscine passerine bird that is broadly distributed through the subtropical rainforests of Central America, the lower montane cloud forests of the Andes from Colombia to central Peru, the lowlands of Amazonia and the Guianas, and the Atlantic forest of southeast Brazil. Pseudopipra is currently recognized as a single, polytypic biological species. We studied the effect of the Neotropical landscape on genetic and phenotypic differentiation within this species using genomic data derived from double digest restriction site associated DNA sequencing (ddRAD), and mitochondrial DNA. Most of the genetic breakpoints we identify among populations coincide with physical barriers to gene flow previously associated with avian areas of endemism. The phylogenetic relationships among these populations imply a novel pattern of Andean origination for this group, with subsequent diversification into the Amazonian lowlands. Our analysis of genomic admixture and gene flow establishes a complex history of introgression between some western Amazonian populations. These reticulate processes confound our application of standard concatenated and coalescent phylogenetic methods and raise the question of whether a lineage in the western Napo area of endemism should be considered a hybrid species. Lastly, analysis of variation in vocal and plumage phenotypes in the context of our phylogeny supports the hypothesis that Pseudopipra is a species-complex composed of at least 8, and perhaps up to 17 distinct species which have arisen in the last ∼2.5 Ma.


PeerJ ◽  
2017 ◽  
Vol 5 ◽  
pp. e3593 ◽  
Author(s):  
Guillaume Billet ◽  
Lionel Hautier ◽  
Benoit de Thoisy ◽  
Frédéric Delsuc

BackgroundWith their Pan-American distribution, long-nosed armadillos (genusDasypus) constitute an understudied model for Neotropical biogeography. This genus currently comprises seven recognized species, the nine-banded armadillo (D. novemcinctus) having the widest distribution ranging from Northern Argentina to the South-Eastern US. With their broad diversity of habitats, nine-banded armadillos provide a useful model to explore the effects of climatic and biogeographic events on morphological diversity at a continental scale.MethodsBased on a sample of 136 skulls ofDasypusspp. belonging to six species, including 112 specimens identified asD. novemcinctus, we studied the diversity and pattern of variation of paranasal cavities, which were reconstructed virtually using µCT-scanning or observed through bone transparency.ResultsOur qualitative analyses of paranasal sinuses and recesses successfully retrieved a taxonomic differentiation between the traditional speciesD. kappleri,D. pilosusandD. novemcinctusbut failed to recover diagnostic features between the disputed and morphologically similarD. septemcinctusandD. hybridus. Most interestingly, the high variation detected in our large sample ofD. novemcinctusshowed a clear geographical patterning, with the recognition of three well-separated morphotypes: one ranging from North and Central America and parts of northern South America west of the Andes, one distributed across the Amazonian Basin and central South America, and one restricted to the Guiana Shield.DiscussionThe question as to whether these paranasal morphotypes may represent previously unrecognized species is to be evaluated through a thorough revision of theDasypusspecies complex integrating molecular and morphological data. Remarkably, our recognition of a distinct morphotype in the Guiana Shield area is congruent with the recent discovery of a divergent mitogenomic lineage in French Guiana. The inflation of the second medialmost pair of caudal frontal sinuses constitutes an unexpected morphological diagnostic feature for this potentially distinct species. Our results demonstrate the benefits of studying overlooked internal morphological structures in supposedly cryptic species revealed by molecular data. It also illustrates the under-exploited potential of the highly variable paranasal sinuses of armadillos for systematic studies.


Author(s):  
Juvenal Enrique Batista Guerra ◽  
Orlando O. Ortiz

Background and Aims: Gustavia sessilis is a neotropical tree, belonging to the Lecythidaceae family, until now known from the Colombian Chocó region only. In this paper, we report G. sessilis for the first time for Central America. Methods: Central American specimens of G. sessilis were collected in 2019 from the Darién Province (eastern Panama). Plant identifications were confirmed by comparing collected specimens with those identified earlier and housed in the MO, PMA, SCZ and UCH herbaria. Type specimens were examined by consulting the JSTOR Global Plants database. The estimations of the conservation status were made based on the criteria of the IUCN.Key results: The record of G. sessilis for Central America is presented, based on a collection made from eastern Panama (Darién Province). Photographs, taxonomic comments, and conservation notes are provided. Additionally, a key for the Central American Gustavia species is included.Conclusions: The distribution of G. sessilis now ranges from Bahía Piñas, Darién Province, Panama to the Condoto river, Chocó region, Colombia, highlighting the importance of the Chocó Panama-Colombia region for the conservation of biodiversity, since it could act as a natural corridor for species. Taking into account the small number of records and the restricted natural range of this species, we recommend considering G. sessilis as an endangered species.


2010 ◽  
Vol 10 (3) ◽  
pp. 8103-8134
Author(s):  
A. Font ◽  
J.-A. Morguí ◽  
X. Rodó

Abstract. A weekly climatology for 2006 composed of 96-h-backward Lagrangian Particle Dispersion simulations is presented for nine aircraft sites measuring vertical profiles of atmospheric CO2 mixing ratios along the 42° N parallel in NE Spain to assess the surface influence at a regional scale (102–103 km) at different altitudes in the vertical profile (600, 1200, 2500 and 4000 meters above the sea level, m a.s.l.). The Potential Surface Influence (PSI) area for the 96-h-backward simulations, defined as the air layer above ground with a thickness of 300 m, are reduced from the continental scale (~107 km2) to the watershed one (~104 km2), when a Residence Time Threshold Criteria (Rttc) greater than 500 s is imposed for each grid cell. In addition, this regional restricted information is confined during 50 h before the arrival for simulations centered at 600 and 1200 m a.s.l. At higher altitudes (2500 and 4000 m a.s.l.), the regional surface influence is only recovered during spring and summer months. For simulations centered at 600 and 1200 m a.s.l. sites separated by ~60 km may overlap 20–50% of the regional surface influences whereas sites separated by ~350 km as such do not overlap. The overlap for sites separated by ~60 km decreases to 8–40% at higher altitudes (2500 and 4000 m a.s.l.). A dense network of sampling sites below 2200 m a.s.l. (whether aircraft sites or tall tower ones) guarantees an appropriate regional coverage to properly assess the dynamics of the regional carbon cycle at a watershed scale (102–103 km length scale).


2022 ◽  
Author(s):  
Imane Laraba ◽  
Mark Busman ◽  
David M. Geiser ◽  
Kerry O'Donnell

Recent studies on multiple continents indicate members of the Fusarium tricinctum species complex (FTSC) are emerging as prevalent pathogens of small-grain cereals, pulses, and other economically important crops. These understudied fusaria produce structurally diverse mycotoxins, among which enniatins (ENNs) and moniliformin (MON) are the most frequent and of greatest concern to food and feed safety. Herein a large survey of fusaria in the Fusarium Research Center and Agricultural Research Service culture collections was undertaken to assess species diversity and mycotoxin potential within the FTSC. A 151-strain collection originating from diverse hosts and substrates from different agroclimatic regions throughout the world was selected from 460 FTSC strains to represent the breadth of FTSC phylogenetic diversity. Evolutionary relationships inferred from a 5-locus dataset, using maximum likelihood and parsimony, resolved the 151 strains as 24 phylogenetically distinct species, including nine that are new to science. Of the five genes analyzed, nearly full-length phosphate permease sequences contained the most phylogenetically informative characters, establishing its suitability for species-level phylogenetics within the FTSC. Fifteen of the species produced ENNs, MON, the sphingosine analog 2-amino-14,16- dimethyloctadecan-3-ol (AOD), and the toxic pigment aurofusarin (AUR) on a cracked corn kernel substrate. Interestingly, the five earliest diverging species in the FTSC phylogeny (i.e., F. iranicum, F. flocciferum, F. torulosum, Fusarium spp. FTSC 8 and 24) failed to produce AOD and MON, but synthesized ENNs and/or AUR. Moreover, our reassessment of nine published phylogenetic studies on the FTSC identified 11 additional novel taxa, suggesting this complex comprises at least 36 species.


Author(s):  
Denisse McLean R.

The modeling of the state of biodiversity in Central America using GLOBIO3 methodology was carried out by the Regional Biodiversity Institute for the Central American Commission on Environment and Development. For each country, current and future states of biodiversity under three socio-economic scenarios were explored. The country results were integrated into one regional assessment. The aim of this chapter is to explain how GLOBIO3 was adapted to the national scale. The main issues and the approaches adopted to solve them are described. The results from the Central American experience are presented followed by a discussion on main model limitations and derived recommendations. Finally, the challenges countries face to integrate the results into their government agendas are analyzed. This chapter is expected to be helpful for potential users of GLOBIO3 who are interested in the application of the methodology on a national and sub regional scale.


Plants ◽  
2020 ◽  
Vol 9 (12) ◽  
pp. 1687
Author(s):  
Nour Abdel Samad ◽  
Oriane Hidalgo ◽  
Elie Saliba ◽  
Sonja Siljak-Yakovlev ◽  
Kit Strange ◽  
...  

Insights into genome size dynamics and its evolutionary impact remain limited by the lack of data for many plant groups. One of these is the genus Iris, of which only 53 out of c. 260 species have available genome sizes. In this study, we estimated the C-values for 41 species and subspecies of Iris mainly from the Eastern Mediterranean region. We constructed a phylogenetic framework to shed light on the distribution of genome sizes across subgenera and sections of Iris. Finally, we tested evolutionary models to explore the mode and tempo of genome size evolution during the radiation of section Oncocyclus. Iris as a whole displayed a great variety of C-values; however, they were unequally distributed across the subgenera and sections, suggesting that lineage-specific patterns of genome size diversification have taken place within the genus. The evolutionary model that best fitted our data was the speciational model, as changes in genome size appeared to be mainly associated with speciation events. These results suggest that genome size dynamics may have contributed to the radiation of Oncocyclus irises. In addition, our phylogenetic analysis provided evidence that supports the segregation of the Lebanese population currently attributed to Iris persica as a distinct species.


2015 ◽  
Vol 28 (2) ◽  
pp. 755-775 ◽  
Author(s):  
Alice M. Grimm ◽  
João P. J. Saboia

Abstract Interdecadal variability modes of monsoon precipitation over South America (SA) are provided by a continental-scale rotated empirical orthogonal function analysis, and their connections to well-known climatic indices and SST anomalies are examined. The analysis, carried out for austral spring and summer, uses a comprehensive set of station data assembled and verified for the period 1950–2000. The presented modes are robust, consistent with previous regional-scale studies and with modes obtained from longer time series over smaller domains. Opposite phases of the main modes show differences around 50% in monthly precipitation. There are significant relationships between the interdecadal variability in spring and summer, indicating local and remote influences. The first modes for both seasons are dipole-like, displaying opposite anomalies in central-east and southeast SA. They tend to reverse polarity from spring to summer. Yet the summer second mode and its related spring fourth mode, which affect the core monsoon region in central Brazil and central-northwestern Argentina, show similar factor loadings, indicating persistence of anomalies from one season to the other, contrary to the first modes. The other presented modes describe the variability in different regions with great monsoon precipitation. Significant connections with different combinations of climatic indices and SST anomalies provide physical basis for the presented modes: three show the strongest connections with SST-based indices, and two have the strongest connections with atmospheric indices. However, the main modes show connections with more than one climatic index and more than one oceanic region, stressing the importance of combined influence.


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