Generalised mutagenesis with transposon Tn5. A laboratory procedure for the identification of genes responsible for a bacterial phenotype and its regulation, illustrated with phenazine production in Pseudomonas chlororaphis

Author(s):  
Federico Matías Muzio ◽  
Patricio Martín Sobrero ◽  
Betina Cecilia Agaras ◽  
Claudio Valverde
Microbiology ◽  
2011 ◽  
Vol 157 (2) ◽  
pp. 398-407 ◽  
Author(s):  
Geneviève Girard ◽  
Sébastien Rigali

The triggering of antibiotic production by various environmental stress molecules can be interpreted as bacteria's response to obtain increased fitness to putative danger, whereas the opposite situation – inhibition of antibiotic production – is more complicated to understand. Phenazines enable Pseudomonas species to eliminate competitors for rhizosphere colonization and are typical virulence factors used for model studies. In the present work, we have investigated the negative effect of subinhibitory concentrations of NaCl, fusaric acid and two antibiotics on quorum-sensing-controlled phenazine production by Pseudomonas chlororaphis. The selected stress factors inhibit phenazine synthesis despite sufficient cell density. Subsequently, we have identified connections between known genes of the phenazine-inducing cascade, including PsrA (Pseudomonas sigma regulator), RpoS (alternative sigma factor), Pip (phenazine inducing protein) and PhzI/PhzR (quorum-sensing system). Under all tested conditions, overexpression of Pip or PhzR restored phenazine production while overexpression of PsrA or RpoS did not. This forced restoration of phenazine production in strains overexpressing regulatory genes pip and phzR significantly impairs growth and stress resistance; this is particularly severe with pip overexpression. We suggest a novel physiological explanation for the inhibition of phenazine virulence factors in pseudomonas species responding to toxic compounds. We propose that switching off phenazine-1-carboxamide (PCN) synthesis by attenuating pip expression would favour processes required for survival. In our model, this ‘decision’ point for promoting PCN production or stress resistance is located downstream of rpoS and just above pip. However, a test with the stress factor rifampicin shows no significant inhibition of Pip production, suggesting that stress factors may also target other and so far unknown protagonists of the PCN signalling cascade.


2014 ◽  
Vol 60 (3) ◽  
pp. 133-138 ◽  
Author(s):  
Ji Soo Kim ◽  
Yong Hwan Kim ◽  
Ju Yeon Park ◽  
Anne J. Anderson ◽  
Young Cheol Kim

An aggressive root colonizer, Pseudomonas chlororaphis O6 produces various secondary metabolites that impact plant health. The sensor kinase GacS is a key regulator of the expression of biocontrol-related traits. Biofilm formation is one such trait because of its role in root surface colonization. This paper focuses on the effects of carbon source on biofilm formation. In comparison with the wild type, a gacS mutant formed biofilms at a reduced level with sucrose as the major carbon source but at much higher level with mannitol in the defined medium. Biofilm formation by the gacS mutant occurred without phenazine production and in the absence of normal levels of acyl homoserine lactones, which promote biofilms with other pseudomonads. Colonization of tomato roots was similar for the wild type and gacS mutant, showing that any differences in biofilm formation in the rhizosphere were not of consequence under the tested conditions. The reduced ability of the gacS mutant to induce systemic resistance against tomato leaf mold and tomato gray mold was consistent with a lack of production of effectors, such as phenazines. These results demonstrated plasticity in biofilm formation and root colonization in the rhizosphere by a beneficial pseudomonad.


2016 ◽  
Vol 3 (5) ◽  
pp. 1103-1113 ◽  
Author(s):  
Jordan Goodman ◽  
Joan E. Mclean ◽  
David W. Britt ◽  
Anne J. Anderson

Cell signaling molecules function in ZnO NPs alter cell signaling in a plant-beneficial pseudomonad to impair phenazine production between cells.


PLoS ONE ◽  
2018 ◽  
Vol 13 (2) ◽  
pp. e0193063 ◽  
Author(s):  
Jun Myoung Yu ◽  
Dongping Wang ◽  
Tessa R. Ries ◽  
Leland S. Pierson ◽  
Elizabeth A. Pierson

2006 ◽  
Vol 73 (1) ◽  
pp. 327-330 ◽  
Author(s):  
Hari B. Krishnan ◽  
Beom Ryong Kang ◽  
Ammulu Hari Krishnan ◽  
Kil Yong Kim ◽  
Young Cheol Kim

ABSTRACT Phenazine production was engineered in Rhizobium etli USDA9032 by the introduction of the phz locus of Pseudomonas chlororaphis O6. Phenazine-producing R. etli was able to inhibit the growth of Botrytis cinerea and Fusarium oxysporum in vitro. Black bean inoculated with phenazine-producing R. etli produced brownish Fix− nodules.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Kaiquan Liu ◽  
Ling Li ◽  
Wentao Yao ◽  
Wei Wang ◽  
Yujie Huang ◽  
...  

AbstractTrans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) is a cyclic β-amino acid used for the synthesis of non-natural peptides and chiral materials. And it is an intermediate product of phenazine production in Pseudomonas spp. Lzh-T5 is a P. chlororaphis strain isolated from tomato rhizosphere found in China. It can synthesize three antifungal phenazine compounds. Disruption the phzF gene of P. chlororaphis Lzh-T5 results in DHHA accumulation. Several strategies were used to improve production of DHHA: enhancing the shikimate pathway by overexpression, knocking out negative regulatory genes, and adding metal ions to the medium. In this study, three regulatory genes (psrA, pykF, and rpeA) were disrupted in the genome of P. chlororaphis Lzh-T5, yielding 5.52 g/L of DHHA. When six key genes selected from the shikimate, pentose phosphate, and gluconeogenesis pathways were overexpressed, the yield of DHHA increased to 7.89 g/L. Lastly, a different concentration of Fe3+ was added to the medium for DHHA fermentation. This genetically engineered strain increased the DHHA production to 10.45 g/L. According to our result, P. chlororaphis Lzh-T5 could be modified as a microbial factory to produce DHHA. This study laid a good foundation for the future industrial production and application of DHHA.


2020 ◽  
Author(s):  
Ling Li ◽  
Zhenghua Li ◽  
Xuehong Zhang ◽  
Wei Wang ◽  
Yujie Huang ◽  
...  

Abstract Background: Trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) is a cyclic β-amino acid used for the synthesis of non-natural peptides and chiral materials. It is an intermediate product of phenazine production in Pseudomonas spp . Lzh-T5 is a P. chlororaphis strain isolated from tomato rhizosphere found in China. It can synthesize three antifungal phenazine compounds. Results: Disrupting the phzF gene of P. chlororaphis Lzh-T5 results in DHHA accumulation. Several strategies were used to improve production of DHHA: enhancing the shikimate pathway by overexpression, knocking out negative regulatory genes, and adding metal ions to the medium. In this study, three regulatory genes ( psrA , pykF, and rpeA ) were-disrupted in the genome of P. chlororaphis Lzh-T5, yielding 4.55 g/L of DHHA. When six key genes selected from the shikimate, pentose phosphate, and gluconeogenesis pathways were overexpressed, the yield of DHHA increased to 6.89g/L. Fe 3+ was added to the medium for DHHA fermentation. This genetically engineered strain increased the DHHA production to 10.45g/L. Conclusions: P. chlororaphis Lzh-T5 could be modified as a microbial factory to produce DHHA by inactivating phzF , disrupting negative regulatory genes, overexpressing key genes, and adding metal ions to medium for fermentation.


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